Interpretation failing due to old deepLIFT version #12
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suragnair
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suragnair
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This is the error:
File "/home/users/surag/oak/miniconda3/envs/basepairmodels/lib/python3.6/site-packages/basepairmodels/cli/interpret.py", line 192, in data_func return [dinuc_shuffle(model_inputs[0], args.num_shuffles, rng)] + \ TypeError: dinuc_shuffle() takes from 1 to 2 positional arguments but 3 were givenFollowed installation instructions as specified in the docs with fresh conda env. It seems to install version
0.6.10.0of deepLIFT. That version takes in only two arguments.https://github.com/kundajelab/deeplift/blob/d0d5f3606b96ea6803b9c8bcb6c3b8e1f4b99300/deeplift/dinuc_shuffle.py#L41
Resolved by
pip instal --upgrade deeplift. Perhaps specify version deepLIFT 0.6.13 or above inrequirements.txt?The text was updated successfully, but these errors were encountered: