From e4faa215296dd5d7c15f644b4f58fb41efc2e43b Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 1 Jan 2024 23:31:05 -0500 Subject: [PATCH] Fix `ZeroDivisionError` on 0-row Parquets with boolean cols, upgrade to Python 3.11 (#50) * fix compression ratio when uncompressed_size == 0 * bump to python 3.11, update GHAs * GHA: cache poetry See also: https://github.com/actions/setup-python/issues/765 * test_parquet util * add empty test0.parquet + `inspect` test * test name typo fix * loosen dep version pins --- .github/workflows/cli_test.yml | 14 +- .github/workflows/unittest.yml | 14 +- parquet_tools/commands/inspect.py | 9 +- poetry.lock | 1701 +++++++++++++++-------------- pyproject.toml | 33 +- tests/test0.parquet | Bin 0 -> 2592 bytes tests/test0_inspect.txt | 56 + tests/test1.parquet | Bin 2678 -> 2675 bytes tests/test2.parquet | Bin 2678 -> 2675 bytes tests/test_inspect.py | 20 +- tests/test_parquet.py | 41 +- tests/test_parquets.py | 25 + tests/test_util.py | 5 +- 13 files changed, 1054 insertions(+), 864 deletions(-) create mode 100644 tests/test0.parquet create mode 100644 tests/test0_inspect.txt create mode 100644 tests/test_parquets.py diff --git a/.github/workflows/cli_test.yml b/.github/workflows/cli_test.yml index e3b6cfa..01272de 100644 --- a/.github/workflows/cli_test.yml +++ b/.github/workflows/cli_test.yml @@ -7,16 +7,22 @@ on: pull_request: types: [opened, synchronize] +env: + PYTHON_VERSION: 3.11 + jobs: build: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v1 - - name: Set up Python 3.8 - uses: actions/setup-python@v1 + - uses: actions/checkout@v3 + - name: Install poetry + run: pipx install poetry + - name: Set up Python ${{ env.PYTHON_VERSION }} + uses: actions/setup-python@v4 with: - python-version: 3.8 + python-version: ${{ env.PYTHON_VERSION }} + cache: poetry - name: Install pipenv and dependencies run: | python -m pip install --upgrade pip diff --git a/.github/workflows/unittest.yml b/.github/workflows/unittest.yml index c86e870..d3c891a 100644 --- a/.github/workflows/unittest.yml +++ b/.github/workflows/unittest.yml @@ -7,16 +7,22 @@ on: pull_request: types: [opened, synchronize] +env: + PYTHON_VERSION: 3.11 + jobs: build: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v1 - - name: Set up Python 3.8 - uses: actions/setup-python@v1 + - uses: actions/checkout@v3 + - name: Install poetry + run: pipx install poetry + - name: Set up Python ${{ env.PYTHON_VERSION }} + uses: actions/setup-python@v4 with: - python-version: 3.8 + python-version: ${{ env.PYTHON_VERSION }} + cache: poetry - name: Install poetry and dependencies run: | python -m pip install --upgrade pip diff --git a/parquet_tools/commands/inspect.py b/parquet_tools/commands/inspect.py index c51d96e..5b0da65 100644 --- a/parquet_tools/commands/inspect.py +++ b/parquet_tools/commands/inspect.py @@ -89,8 +89,13 @@ def _simple_schema_expression(file_meta, schema) -> str: for i, column in enumerate(columns): col = schema.column(i) col_meta = file_meta.row_group(0).column(i) - col_compression_space_saving_ratio = 1 - (col_meta.total_compressed_size / col_meta.total_uncompressed_size) - col_compression = f"{col_meta.compression} (space_saved: {col_compression_space_saving_ratio*100:.0f}%)" + if col_meta.total_uncompressed_size: + col_compression_space_saving_ratio = 1 - (col_meta.total_compressed_size / col_meta.total_uncompressed_size) + col_compression_space_saving_pct = col_compression_space_saving_ratio * 100 + col_compression_space_saving_pct_str = f"{col_compression_space_saving_pct:.0f}%" + else: + col_compression_space_saving_pct_str = 'N/A' + col_compression = f"{col_meta.compression} (space_saved: {col_compression_space_saving_pct_str})" exp += dedent(f''' ############ Column({column}) ############ name: {col.name} diff --git a/poetry.lock b/poetry.lock index 51bfe9c..e4bb198 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,190 +1,138 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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[tool.poetry.dependencies] -python = "^3.8" -halo = "^0.0.29" +python = ">=3.8" +halo = "^0.0.31" pyarrow = "*" -pandas = ">=1" -tabulate = "^0.8.7" -boto3 = "^1.13" -thrift = "^0.13.0" -colorama = "^0.4.3" +pandas = "^2.1.4" +tabulate = "^0.9.0" +boto3 = "^1.34.11" +thrift = "^0.16.0" +colorama = "^0.4.6" [tool.poetry.dev-dependencies] -autopep8 = "^1.5.3" -flake8 = "^3.8.3" -mypy = "^0.780" -pylint = "^2.5.3" -pytest = "^5.4.3" -pytest-mock = "^3.1.1" -moto = "*" -wheel = "^0.38.1" -twine = "^3.1.1" +autopep8 = "^2.0.4" +flake8 = "^6.1.0" +mypy = "^1.8.0" +pyarrow = "14.0.2" # various test outputs are sensitive to this +pylint = "^3.0.3" +pytest = "^7.4.3" +pytest-mock = "^3.12.0" +moto = "^4.2.12" +wheel = "^0.42.0" +twine = "^4.0.2" [tool.poetry.scripts] parquet-tools = "parquet_tools.cli:main" diff --git a/tests/test0.parquet b/tests/test0.parquet new file mode 100644 index 0000000000000000000000000000000000000000..91192a6e82ac3a3fb9be1be634a8bafd83621e96 GIT binary patch literal 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z^?XFxfapWSFQ=To@q}(UVcd|F9d0e0) z5cq-!ClCP!E|K~`-~^KL2+B{+4a)%u8wCIb%Ylr*&`1#96+}3K^@CYJ{Xiiw-vuO) z;*nA|`2nY5NhMf16htEI0P!LnogE$BK{Nz-Iy!>PcegB!f*Q*p0rXr^VQFfKZgN3^ k0@Q~JhI*!YhPuIijsd|Q{vnb!G7Jn5#IT8jfdLeg0FfVSs{jB1 diff --git a/tests/test_inspect.py b/tests/test_inspect.py index 0ab4e9f..3ad8909 100644 --- a/tests/test_inspect.py +++ b/tests/test_inspect.py @@ -1,18 +1,14 @@ -import pytest -from parquet_tools.commands.inspect import _execute_detail, _execute_simple import pyarrow as pa -import pandas as pd +import pytest from tempfile import TemporaryDirectory -import numpy as np + +from parquet_tools.commands.inspect import _execute_detail, _execute_simple +from tests.test_parquets import get_test_dataframe @pytest.fixture def parquet_file(): - df = pd.DataFrame( - {'one': [-1, np.nan, 2.5], - 'two': ['foo', 'bar', 'baz'], - 'three': [True, False, True]} - ) + df = get_test_dataframe() table = pa.Table.from_pandas(df) with TemporaryDirectory() as tmp_path: pq_path = f'{tmp_path}/test.pq' @@ -36,12 +32,12 @@ def test_excute_simple(capfd, parquet_file): assert err == '' assert out == ''' ############ file meta data ############ -created_by: parquet-cpp-arrow version 5.0.0 +created_by: parquet-cpp-arrow version 14.0.2 num_columns: 3 num_rows: 3 num_row_groups: 1 -format_version: 1.0 -serialized_size: 2222 +format_version: 2.6 +serialized_size: 2223 ############ Columns ############ diff --git a/tests/test_parquet.py b/tests/test_parquet.py index a436299..ce922c5 100644 --- a/tests/test_parquet.py +++ b/tests/test_parquet.py @@ -1,3 +1,8 @@ +from os import path +from os.path import dirname + +from subprocess import check_output + from parquet_tools.parquet.reader import get_filemetadata from parquet_tools.gen_py.parquet.ttypes import (FileMetaData, SchemaElement, LogicalType, StringType, RowGroup, ColumnMetaData, ColumnChunk, Statistics, PageEncodingStats, KeyValue) @@ -11,10 +16,9 @@ def fmd(self) -> FileMetaData: return fmd def test_version(self, fmd): + assert fmd.version == 2 - assert fmd.version == 1 - - def test_schma(self, fmd): + def test_schema(self, fmd): assert fmd.schema == [ SchemaElement( type=None, @@ -88,7 +92,7 @@ def test_row_groups(self, fmd): file_offset=108, meta_data=ColumnMetaData( type=5, - encodings=[2, 0, 3], + encodings=[0, 3, 8], path_in_schema=['one'], codec=1, num_values=3, @@ -109,11 +113,11 @@ def test_row_groups(self, fmd): encoding_stats=[ PageEncodingStats( page_type=2, - encoding=2, + encoding=0, count=1), PageEncodingStats( page_type=0, - encoding=2, + encoding=8, count=1)], bloom_filter_offset=None), offset_index_offset=None, @@ -127,7 +131,7 @@ def test_row_groups(self, fmd): file_offset=281, meta_data=ColumnMetaData( type=6, - encodings=[2, 0, 3], + encodings=[0, 3, 8], path_in_schema=['two'], codec=1, num_values=3, @@ -147,11 +151,11 @@ def test_row_groups(self, fmd): encoding_stats=[ PageEncodingStats( page_type=2, - encoding=2, + encoding=0, count=1), PageEncodingStats( page_type=0, - encoding=2, + encoding=8, count=1) ], bloom_filter_offset=None @@ -168,7 +172,7 @@ def test_row_groups(self, fmd): file_offset=388, meta_data=ColumnMetaData( type=0, - encodings=[0, 3], + encodings=[3, 0], path_in_schema=['three'], codec=1, num_values=3, @@ -200,10 +204,10 @@ def test_row_groups(self, fmd): crypto_metadata=None, encrypted_column_metadata=None )], - total_byte_size=226, + total_byte_size=216, num_rows=3, sorting_columns=None, - file_offset=108, + file_offset=4, total_compressed_size=226, ordinal=0) ] @@ -212,8 +216,17 @@ def test_key_value_metadata(self, fmd): assert fmd.key_value_metadata == [ KeyValue( key='pandas', - value='{"index_columns": [{"kind": "range", "name": null, "start": 0, "stop": 3, "step": 1}], "column_indexes": [{"name": null, "field_name": null, "pandas_type": "unicode", "numpy_type": "object", "metadata": {"encoding": "UTF-8"}}], "columns": [{"name": "one", "field_name": "one", "pandas_type": "float64", "numpy_type": "float64", "metadata": null}, {"name": "two", "field_name": "two", "pandas_type": "unicode", "numpy_type": "object", "metadata": null}, {"name": "three", "field_name": "three", "pandas_type": "bool", "numpy_type": "bool", "metadata": null}], "creator": {"library": "pyarrow", "version": "0.17.0"}, "pandas_version": "1.0.3"}'), + value='{"index_columns": [{"kind": "range", "name": null, "start": 0, "stop": 3, "step": 1}], "column_indexes": [{"name": null, "field_name": null, "pandas_type": "unicode", "numpy_type": "object", "metadata": {"encoding": "UTF-8"}}], "columns": [{"name": "one", "field_name": "one", "pandas_type": "float64", "numpy_type": "float64", "metadata": null}, {"name": "two", "field_name": "two", "pandas_type": "unicode", "numpy_type": "object", "metadata": null}, {"name": "three", "field_name": "three", "pandas_type": "bool", "numpy_type": "bool", "metadata": null}], "creator": {"library": "pyarrow", "version": "14.0.2"}, "pandas_version": "2.1.4"}'), KeyValue( key='ARROW:schema', - value='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') + value='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') ] + + def test_inspect(self): + tests_dir = dirname(__file__) + test0_parquet_path = path.join(tests_dir, 'test0.parquet') + actual = check_output(['parquet-tools', 'inspect', test0_parquet_path]).decode() + expected_path = path.join(tests_dir, 'test0_inspect.txt') + with open(expected_path, 'r') as f: + expected = f.read() + assert actual == expected diff --git a/tests/test_parquets.py b/tests/test_parquets.py new file mode 100644 index 0000000..1af48f9 --- /dev/null +++ b/tests/test_parquets.py @@ -0,0 +1,25 @@ +from os.path import dirname + +import numpy as np +import pandas as pd + + +def get_test_dataframe(): + return pd.DataFrame( + {'one': [-1, np.nan, 2.5], + 'two': ['foo', 'bar', 'baz'], + 'three': [True, False, True]} + ) + + +def write_test_dataframes(): + df = get_test_dataframe() + tests_dir = dirname(__file__) + df.to_parquet(f'{tests_dir}/test1.parquet') + df.to_parquet(f'{tests_dir}/test2.parquet') + df0 = pd.DataFrame({ 'a': [], 'b': [], 'c': [], 'd': [], }).astype({ 'a': float, 'b': str, 'c': int, 'd': bool }) + df0.to_parquet(f'{tests_dir}/test0.parquet') + + +if __name__ == '__main__': + write_test_dataframes() diff --git a/tests/test_util.py b/tests/test_util.py index f445218..c9e1210 100644 --- a/tests/test_util.py +++ b/tests/test_util.py @@ -19,6 +19,7 @@ def test_is_wildcard(self, pf, expected): @pytest.mark.parametrize('pf, expected', [ ( LocalParquetFile(path='./tests/*.parquet'), [ + LocalParquetFile('./tests/test0.parquet'), LocalParquetFile('./tests/test1.parquet'), LocalParquetFile('./tests/test2.parquet') ] @@ -82,11 +83,13 @@ def test_multiple_localfile(self): LocalParquetFile(path='./tests/*.parquet'), ) - assert len(actual) == 2 + assert len(actual) == 3 assert isinstance(actual[0], LocalParquetFile) assert isinstance(actual[1], LocalParquetFile) + assert isinstance(actual[1], LocalParquetFile) assert {a.path for a in actual} == { + './tests/test0.parquet', './tests/test1.parquet', './tests/test2.parquet', }