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Can I use ultra to align est to references #23

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xiekunwhy opened this issue Apr 23, 2024 · 1 comment
Open

Can I use ultra to align est to references #23

xiekunwhy opened this issue Apr 23, 2024 · 1 comment

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@xiekunwhy
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Hi,

Can I use ultra to align est sequences (not long reads) to references ?

Best,
Kun
@ksahlin
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ksahlin commented Apr 23, 2024 •
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From a quick search, ESTs are, at least on a sequence level, longer subsequences of genes or transcripts with low error rates. If so, then yes, uLTRA should be able to align such sequences.

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@ksahlin @xiekunwhy