From 991540a3db3035fc8d1ddd0d37af63750b8531f1 Mon Sep 17 00:00:00 2001
From: Marcel Martin <marcel.martin@scilifelab.se>
Date: Wed, 20 Mar 2024 13:39:25 +0100
Subject: [PATCH] Use optimized parameters according to optimization in issue
 #423

---
 src/indexparameters.cpp | 15 ++++++++-------
 1 file changed, 8 insertions(+), 7 deletions(-)

diff --git a/src/indexparameters.cpp b/src/indexparameters.cpp
index b8ed42cd..53469472 100644
--- a/src/indexparameters.cpp
+++ b/src/indexparameters.cpp
@@ -36,13 +36,14 @@ struct Profile {
 static auto max{std::numeric_limits<int>::max()};
 
 static std::vector<Profile> profiles = {
-        Profile{ 50,  70, 18, -4, -2,  1},
-        Profile{ 75,  90, 20, -4, -3,  2},
-        Profile{100, 110, 20, -4, -2,  2},
-        Profile{125, 135, 20, -4, -1,  4},
-        Profile{150, 175, 20, -4,  1,  7},
-        Profile{250, 375, 22, -4,  2, 12},
-        Profile{400, max, 23, -6,  2, 12},
+        Profile{ 50,  70, 16, -4, -2,  -1},
+        Profile{ 75,  90, 19, -4, -1, -1},
+        Profile{100, 110, 17, -4,  1,  4},
+        Profile{125, 135, 20, -4,  1,  4},
+        Profile{150, 175, 20, -4,  2,  6},
+        Profile{250, 275, 23, -4,  3, 13},
+        Profile{300, 375, 25, -4,  3, 14},
+        Profile{400, max, 27, -6,  5, 14},
     };
 
 /* Create an IndexParameters instance based on a given read length.