DESCRIPTION

Package: GenomicDistributionsBioC2022
Title: GenomicDistributions: Fast, Easy, And Flexible Summary And 
   Visualization Of Genomic Regions
Version: 1.0.1
Authors@R: 
    c(
	  person("Kristyna", "Kupkova", role=c("aut", "cre"),
    email = "kristynakupkova@gmail.com"),
    person("Jose", "Verdezoto", role="aut"),
    person("Tessa", "Danehy", role="aut"),
    person("John", "Lawson", role="aut"),
    person("Jose", "Verdezoto", role="aut"),
    person("Michal", "Stolarczyk", role="aut"),
    person("Jason", "Smith", role="aut"),
    person("Bingjie", "Xue", role="aut"),
    person("Sophia", "Rogers", role="aut"),
    person("John", "Stubbs", role="aut"),
    person(given=c("Nathan", "C."), "Sheffield",
    email = "nathan@code.databio.org", role="aut"))
Description: This package serves as a tutorial for using GenomicDistributions
   package. With GenomicDistributions you can easily generate and plot summary
   statistics for genomic regions of interest. The offered functions allow you 
   to calculate and plot following: distribution over chromosomes, distances 
   from genomic features (e.g., TSS), distribution over annotation classes, 
   signal summary in regions, region widths, distances to the nearest neighbor,
   GC content, and dinucleotide frequencies.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
Depends: 
    Biobase,
    IRanges,
    GenomicRanges, 
    GenomicDistributions,
    GenomicDistributionsData,
    BSgenome.Hsapiens.UCSC.hg38.masked,
    GenomeInfoDb
Imports:
    data.table,
    ensembldb,
    BSgenome,
    biomaRt,
    ggplot2
Suggests: 
    knitr,
    rmarkdown,
    pkgdown,
    rtracklayer
URL: https://kkupkova.github.io/GenomicDistributionsBioC2022/
BugReports: https://github.com/databio/GenomicDistributions/issues/new
VignetteBuilder: knitr
DockerImage: ghcr.io/kkupkova/genomicdistributionsbioc2022:latest