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NEWS
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NEWS
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CHANGES IN VERSION 1.20.0
-------------------------
o Bioconductor 3.18 release
CHANGES IN VERSION 1.18.0
-------------------------
o Bioconductor 3.17 release
CHANGES IN VERSION 1.16.0
-------------------------
o Bioconductor 3.16 release
CHANGES IN VERSION 1.14.0
-------------------------
o Bioconductor 3.15 release
CHANGES IN VERSION 1.12.1
-------------------------
o Fix typos
CHANGES IN VERSION 1.12.0
-------------------------
o Bioconductor 3.14 release
CHANGES IN VERSION 1.10.0
-------------------------
o Bioconductor 3.13 release
CHANGES IN VERSION 1.8.0
-------------------------
o Bioconductor 3.12 release
o added limits argument for spectrum plot x-values to harmonize color scale
of multiple spectrum plots
o replaced Rcpp::RcppArmadillo::sample() with now fixed Rcpp::sample()
CHANGES IN VERSION 1.6.2
-------------------------
o updated paper references
o fixed minor formatting issues
o incremented Roxygen2 version
CHANGES IN VERSION 1.6.0
-------------------------
o Bioconductor 3.11 release
o changed function names to adhere to tidyverse style guide
(breaking change)
o change method names to adhere to tidyverse style guide (breaking change)
o changed parameter names to adhere to tidyverse style guide
(breaking change)
o changed internal variable names to adhere to tidyverse style guide
o fixed issue with mixed cached and uncached sequences
o added unit tests
o fixed issue with uninitialized IUPAC table
o removed unused C++ functions
o gracefully stop cluster after parLapply
o added transcript values overlay to spectrum plots
o fixed issue due to floating point machine precision
o improved efficiency of transcript set shuffling
o replaced Rcpp::sample() with Rcpp::RcppArmadillo::sample() to avoid
memory leak
o fix roxygen annotation for package data
CHANGES IN VERSION 1.4.0
-------------------------
o Bioconductor 3.10 release
CHANGES IN VERSION 1.2.1
-------------------------
o updated author list
CHANGES IN VERSION 1.2.0
-------------------------
o Bioconductor 3.9 release
CHANGES IN VERSION 1.0.2
-------------------------
o clarified return value description of k-mer-based TSMA
o updated roxygen2
o updated license
o clarified argument description of SPMA
o fixed issue with multi-threaded cluster environment
CHANGES IN VERSION 1.0.1
-------------------------
o fixed typo in vignette
o added code example for drawVolcanoPlot function
o increased size of circles for motif-associated k-mers in drawVolcanoPlot
function
CHANGES IN VERSION 1.0.0
-------------------------
o initial release on Bioconductor 3.8 release branch
CHANGES IN VERSION 0.99.4
-------------------------
o initial release on Bioconductor