DESCRIPTION

Package: transite
Title: RNA-binding protein motif analysis
Version: 1.21.1
Authors@R: 
    c(person(given = "Konstantin",
             family = "Krismer",
             role = c("aut", "cre", "cph"),
             email = "krismer@mit.edu",
             comment = c(ORCID = "0000-0001-8994-3416")),
      person(given = "Anna",
             family = "Gattinger",
             role = "aut",
             email = "anna.gattinger@risc-software.at",
             comment = c(ORCID = "0000-0001-7094-9279")),
      person(given = "Michael",
             family = "Yaffe",
             role = c("ths", "cph"),
             email = "myaffe@mit.edu",
             comment = c(ORCID = "0000-0002-9547-3251")),
      person(given = "Ian",
             family = "Cannell",
             role = "ths",
             email = "icannell@mit.edu",
             comment = c(ORCID = "0000-0001-5832-9210")))
Maintainer: Konstantin Krismer <krismer@mit.edu>
Description: transite is a computational method that allows
    comprehensive analysis of the regulatory role of RNA-binding proteins
    in various cellular processes by leveraging preexisting gene
    expression data and current knowledge of binding preferences of
    RNA-binding proteins.
License: MIT + file LICENSE
URL: https://transite.mit.edu
Depends:
    R (>= 3.5)
Imports:
    BiocGenerics (>= 0.26.0),
    Biostrings (>= 2.48.0),
    dplyr (>= 0.7.6),
    GenomicRanges (>= 1.32.6),
    ggplot2 (>= 3.0.0),
    grDevices,
    gridExtra (>= 2.3),
    methods,
    parallel,
    Rcpp (>= 1.0.4.8),
    scales (>= 1.0.0),
    stats,
    TFMPvalue (>= 0.0.8),
    stringr (>= 1.5.1),
    utils
Suggests:
    knitr (>= 1.20),
    rmarkdown (>= 1.10),
    roxygen2 (>= 6.1.0),
    testthat (>= 2.1.0)
LinkingTo: 
    Rcpp (>= 1.0.4.8)
VignetteBuilder: 
    knitr
biocViews: GeneExpression, Transcription,
    DifferentialExpression, Microarray, mRNAMicroarray, Genetics,
    GeneSetEnrichment
Encoding: UTF-8
RoxygenNote: 7.3.1
SystemRequirements: C++11