DESCRIPTION

Package: Logolas
Type: Package
Encoding: UTF-8
Title: EDLogo Plots Featuring String Logos and Adaptive Scaling of
    Position-Weight Matrices
Version: 1.3.1
Date: 2018-02-06
Authors@R: c(person("Kushal","Dey",email = "kkdey@uchicago.edu",
                    role = c("aut","cre")),
             person("Dongyue","Xie",role = "aut"),
             person("Peter","Carbonetto",role = "ctb"),
             person("Matthew","Stephens",role = "aut"))
Maintainer: Kushal Dey <kkdey@uchicago.edu>
Description: Produces logo plots highlighting both enrichment and
    depletion of characters, allows for plotting of string symbols,
    and performs scaling of position-weights adaptively, along with
    several fun stylizations.
License: GPL (>= 2)
URL: https://github.com/kkdey/Logolas
BugReports: http://github.com/kkdey/Logolas/issues
LazyData: TRUE
NeedsCompilation: no
Depends: R (>= 3.4)
Imports:
    grid,
    SQUAREM,
    LaplacesDemon,
    stats,
    graphics,
    utils,
    ggplot2,
    gridBase,
    seqinr,
    ape,
    seqLogo,
    Biostrings,
    CVXR,
    ashr
Suggests:
    knitr,
    rmarkdown,
    BiocStyle,
    Biobase,
    devtools,
    xtable,
    gridExtra, 
    RColorBrewer,
    ggseqlogo
biocViews:
    SequenceMatching,
    Alignment,
    Software,
    Visualization,
    Bayesian
VignetteBuilder: knitr
RoxygenNote: 6.1.1