diff --git a/docs/D3B_ANNOFUSE.md b/docs/D3B_ANNOFUSE.md index 8deb810..27e04e7 100644 --- a/docs/D3B_ANNOFUSE.md +++ b/docs/D3B_ANNOFUSE.md @@ -13,8 +13,8 @@ Please refer to [annoFuse](https://github.com/d3b-center/annoFuse) R package for ```yaml inputs: sample_name: { type: 'string', doc: "Sample name used for file base name of all outputs" } - FusionGenome: { type: 'File', doc: "GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz", sbg:suggestedValue: { class: 'File', path: '5d9c8d04e4b0950cce147f94', name: 'GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz' }} - genome_untar_path: { type: 'string?', doc: "This is what the path will be when genome_tar is unpackaged", default: "GRCh38_v27_CTAT_lib_Feb092018/ctat_genome_lib_build_dir" } + FusionGenome: { type: 'File', doc: "GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz", "sbg:suggestedValue": { class: 'File', path: '62853e7ad63f7c6d8d7ae5a8', name: 'GRCh38_v39_CTAT_lib_Mar242022.CUSTOM.tar.gz' }} + genome_untar_path: { type: 'string?', doc: "This is what the path will be when genome_tar is unpackaged", default: "GRCh38_v39_CTAT_lib_Mar242022.CUSTOM" } rsem_expr_file: { type: 'File', doc: "gzipped rsem gene expression file" } arriba_output_file: { type: 'File', doc: "Output from arriba, usually extension arriba.fusions.tsv" } col_num: { type: 'int?', doc: "column number in file of fusion name." } @@ -32,5 +32,5 @@ inputs: ```yaml outputs: - annofuse_filtered_fusions_tsv: {type: File, outputSource: annoFuse_filter/filtered_fusions_tsv, doc: "Filtred output of formatted and annotated Star Fusion and arriba results"} + annofuse_filtered_fusions_tsv: {type: File, outputSource: annoFuse_filter/filtered_fusions_tsv, doc: "Filtered output of formatted and annotated Star Fusion and arriba results"} ``` \ No newline at end of file diff --git a/workflow/kfdrc_RNAseq_workflow.cwl b/workflow/kfdrc_RNAseq_workflow.cwl index 8069b0f..52c9fb9 100644 --- a/workflow/kfdrc_RNAseq_workflow.cwl +++ b/workflow/kfdrc_RNAseq_workflow.cwl @@ -865,5 +865,5 @@ hints: - SE - STAR "sbg:links": -- id: 'https://github.com/kids-first/kf-rnaseq-workflow/releases/tag/v4.2.0' +- id: 'https://github.com/kids-first/kf-rnaseq-workflow/releases/tag/v4.2.1' label: github-release