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Missing esearch and efetch #5

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IgorFobia opened this issue May 18, 2016 · 2 comments
Open

Missing esearch and efetch #5

IgorFobia opened this issue May 18, 2016 · 2 comments

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@IgorFobia
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installer/db_installer.sh
Gives this error:

db_installer.sh: 370: db_installer.sh: esearch: not found
db_installer.sh: 370: db_installer.sh: efetch: not found

Please make those commands be installed by installer/dependency_installer.sh

@keylabivdc
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esearch and efetch were included in the edirect folder under VIP. You can see echo "PATH=$PATH:$VIP_PATH/edirect" >> ~/.bashrc in the dependency_installer.sh. I re-run the dependency_installer.sh within a ubuntu docker and no errors reported. Could you see the $PATH in your system?

@IgorFobia
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Thank you for your quick reaction. I re-run the dependency_installer.sh, I'll tell you if this problem persists.
PATH seems correct now.
For you information, dependency_installer.sh gave me these error messages:

cp: omitting directory ‘edirect’
cp: omitting directory ‘installer’
mv: cannot move ‘edirect’ to ‘/usr/VIP/edirect’: Directory not empty

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