macros.tex

\newcommand{\paa}{Pa\ensuremath{\alpha}}
\newcommand{\brg}{Br\ensuremath{\gamma}}
\newcommand{\msun}{\ensuremath{\mathrm{M}_{\odot}}\xspace}			%  Msun
\newcommand{\mdot}{\ensuremath{\dot{M}}\xspace}
\newcommand{\lsun}{\ensuremath{L_{\odot}}\xspace}			%  Lsun
\newcommand{\rsun}{\ensuremath{R_{\odot}}\xspace}			%  Rsun
\newcommand{\lbol}{\ensuremath{L_{\mathrm{bol}}\xspace}}	%  Lbol
\newcommand{\ks}{K\ensuremath{_{\mathrm{s}}}}		%  Ks
\newcommand{\hh}{\ensuremath{\textrm{H}_{2}}\xspace}			%  H2
\newcommand{\dens}{\ensuremath{n(\hh) [\percc]}\xspace}
\newcommand{\formaldehyde}{\ensuremath{\textrm{H}_2\textrm{CO}}\xspace}
\newcommand{\formamide}{\ensuremath{\textrm{NH}_2\textrm{CHO}}\xspace}
\newcommand{\formaldehydeIso}{\ensuremath{\textrm{H}_2~^{13}\textrm{CO}}\xspace}
\newcommand{\methanol}{\ensuremath{\textrm{CH}_3\textrm{OH}}\xspace}
\newcommand{\ortho}{\ensuremath{\textrm{o-H}_2\textrm{CO}}\xspace}
\newcommand{\para}{\ensuremath{\textrm{p-H}_2\textrm{CO}}\xspace}
\newcommand{\oneone}{\ensuremath{1_{1,0}-1_{1,1}}\xspace}
\newcommand{\twotwo}{\ensuremath{2_{1,1}-2_{1,2}}\xspace}
\newcommand{\threethree}{\ensuremath{3_{1,2}-3_{1,3}}\xspace}
\newcommand{\threeohthree}{\ensuremath{3_{0,3}-2_{0,2}}\xspace}
\newcommand{\threetwotwo}{\ensuremath{3_{2,2}-2_{2,1}}\xspace}
\newcommand{\threetwoone}{\ensuremath{3_{2,1}-2_{2,0}}\xspace}
\newcommand{\fourtwotwo}{\ensuremath{4_{2,2}-3_{1,2}}\xspace} % CH3OH 218.4 GHz
\newcommand{\methylcyanide}{\ensuremath{\textrm{CH}_{3}\textrm{CN}}\xspace}
\newcommand{\ketene}{\ensuremath{\textrm{H}_{2}\textrm{CCO}}\xspace}
\newcommand{\ethylcyanide}{\ensuremath{\textrm{CH}_3\textrm{CH}_2\textrm{CN}}\xspace}
\newcommand{\cyanoacetylene}{\ensuremath{\textrm{HC}_{3}\textrm{N}}\xspace}
\newcommand{\methylformate}{\ensuremath{\textrm{CH}_{3}\textrm{OCHO}}\xspace}
\newcommand{\dimethylether}{\ensuremath{\textrm{CH}_{3}\textrm{OCH}_{3}}\xspace}
\newcommand{\gaucheethanol}{\ensuremath{\textrm{g-CH}_3\textrm{CH}_2\textrm{OH}}\xspace}
\newcommand{\acetone}{\ensuremath{\left[\textrm{CH}_{3}\right]_2\textrm{CO}}\xspace}
\newcommand{\methyleneamidogen}{\ensuremath{\textrm{H}_{2}\textrm{CN}}\xspace}
\newcommand{\Rone}{\ensuremath{\para~S_{\nu}(\threetwoone) / S_{\nu}(\threeohthree)}\xspace}
\newcommand{\Rtwo}{\ensuremath{\para~S_{\nu}(\threetwotwo) / S_{\nu}(\threetwoone)}\xspace}
\newcommand{\JKaKc}{\ensuremath{J_{K_a K_c}}}
\newcommand{\water}{H$_{2}$O\xspace}		%  H2O
\newcommand{\feii}{\ion{Fe}{ii}\xspace}		%  FeII
\newcommand{\pc}{\ensuremath{\mathrm{pc}}\xspace}
\newcommand{\myr}{\ensuremath{\mathrm{Myr}}\xspace}

\newcommand{\uchii}{\ion{UCH}{ii}\xspace}
\newcommand{\UCHII}{\ion{UCH}{ii}\xspace}
\newcommand{\hchii}{\ion{HCH}{ii}\xspace}
\newcommand{\HCHII}{\ion{HCH}{ii}\xspace}
\newcommand{\hii}{\ion{H}{ii}\xspace}

\newcommand{\hi}{H~{\sc i}\xspace}
\newcommand{\Hii}{\hii}
\newcommand{\HII}{\hii}
\newcommand{\Xform}{\ensuremath{X_{\formaldehyde}}}
\newcommand{\kms}{\textrm{km~s}\ensuremath{^{-1}}\xspace}	%  km s-1
\newcommand{\nsample}{456\xspace}
\newcommand{\CFR}{5\xspace} % nMPC / 0.25 / 2 (6 for W51 once, 8 for W51 twice) REFEDIT: With f_observed=0.3, becomes 3/2./0.3 = 5
\newcommand{\permyr}{\ensuremath{\mathrm{Myr}^{-1}}\xspace}
\newcommand{\pers}{\ensuremath{\mathrm{s}^{-1}}\xspace}
\newcommand{\perspc}{\ensuremath{\mathrm{pc}^{-2}}\xspace}
\newcommand{\tsuplim}{0.5\xspace} % upper limit on starless timescale
\newcommand{\ncandidates}{18\xspace}
\newcommand{\mindist}{8.7\xspace}
\newcommand{\rcluster}{2.5\xspace}
\newcommand{\ncomplete}{13\xspace}
\newcommand{\middistcut}{13.0\xspace}
\newcommand{\nMPC}{3\xspace} % only count W51 once.  W51, W49, G010
\newcommand{\obsfrac}{30}
\newcommand{\nMPCtot}{10\xspace} % = nmpc / obsfrac
\newcommand{\nMPCtoterr}{6\xspace} % = sqrt(nmpc) / obsfrac
\newcommand{\plaw}{2.1\xspace}
\newcommand{\plawerr}{0.3\xspace}
\newcommand{\mmin}{\ensuremath{10^4~\msun}\xspace}
%\newcommand{\perkmspc}{\textrm{per~km~s}\ensuremath{^{-1}}\textrm{pc}\ensuremath{^{-1}}\xspace}	%  km s-1 pc-1
\newcommand{\kmspc}{\textrm{km~s}\ensuremath{^{-1}}\textrm{pc}\ensuremath{^{-1}}\xspace}	%  km s-1 pc-1
\newcommand{\sqcm}{cm$^{2}$\xspace}		%  cm^2
\newcommand{\percc}{\ensuremath{\textrm{cm}^{-3}}\xspace}
\newcommand{\perpc}{\ensuremath{\textrm{pc}^{-1}}\xspace}
\newcommand{\persc}{\ensuremath{\textrm{cm}^{-2}}\xspace}
\newcommand{\persr}{\ensuremath{\textrm{sr}^{-1}}\xspace}
\newcommand{\peryr}{\ensuremath{\textrm{yr}^{-1}}\xspace}
\newcommand{\perkmspc}{\textrm{km~s}\ensuremath{^{-1}}\textrm{pc}\ensuremath{^{-1}}\xspace}	%  km s-1 pc-1
\newcommand{\perkms}{\textrm{per~km~s}\ensuremath{^{-1}}\xspace}	%  km s-1 
\newcommand{\um}{\ensuremath{\mu \textrm{m}}\xspace}    % micron
\newcommand{\microjy}{\ensuremath{\mu\textrm{Jy}}\xspace}    % micron
\newcommand{\mum}{\um}
\newcommand{\htwo}{\ensuremath{\textrm{H}_2}}
\newcommand{\Htwo}{\ensuremath{\textrm{H}_2}}
\newcommand{\HtwoO}{\ensuremath{\textrm{H}_2\textrm{O}}}
\newcommand{\htwoo}{\ensuremath{\textrm{H}_2\textrm{O}}}
\newcommand{\ha}{\ensuremath{\textrm{H}\alpha}}
\newcommand{\hb}{\ensuremath{\textrm{H}\beta}}
\newcommand{\so}{SO~\ensuremath{5_6-4_5}\xspace}
\newcommand{\SO}{SO~\ensuremath{1_2-1_1}\xspace}
\newcommand{\ammonia}{NH\ensuremath{_3}\xspace}
\newcommand{\twelveco}{\ensuremath{^{12}\textrm{CO}}\xspace}
\newcommand{\thirteenco}{\ensuremath{^{13}\textrm{CO}}\xspace}
\newcommand{\ceighteeno}{\ensuremath{\textrm{C}^{18}\textrm{O}}\xspace}
\def\ee#1{\ensuremath{\times10^{#1}}}
\newcommand{\degrees}{\ensuremath{^{\circ}}}
% can't have \degree because I'm getting a degree...
\newcommand{\lowirac}{800}
\newcommand{\highirac}{8000}
\newcommand{\lowmips}{600}
\newcommand{\highmips}{5000}
\newcommand{\perbeam}{\ensuremath{\textrm{beam}^{-1}}\xspace}
\newcommand{\ds}{\ensuremath{\textrm{d}s}}
\newcommand{\dnu}{\ensuremath{\textrm{d}\nu}}
\newcommand{\dv}{\ensuremath{\textrm{d}v}}
\def\secref#1{Section \ref{#1}}
\def\eqref#1{Equation \ref{#1}}
\def\facility#1{#1}
%\newcommand{\arcmin}{'}

\def\citenum#1{#1}

\newcommand{\necluster}{Sh~2-233IR~NE}
\newcommand{\swcluster}{Sh~2-233IR~SW}
\newcommand{\region}{IRAS 05358}

\newcommand{\nwfive}{40}
\newcommand{\nouter}{15}

\newcommand{\vone}{{\rm v}1.0\xspace}
\newcommand{\vtwo}{{\rm v}2.0\xspace}
\newcommand\mjysr{\ensuremath{{\rm MJy~sr}^{-1}}}
\newcommand\jybm{\ensuremath{{\rm Jy~bm}^{-1}}}
\newcommand\nbolocat{8552\xspace}
\newcommand\nbolocatnew{548\xspace}
\newcommand\nbolocatnonew{8004\xspace} % = nbolocat-nbolocatnew
%\renewcommand\arcdeg{\mbox{$^\circ$}\xspace} 
%\renewcommand\arcmin{\mbox{$^\prime$}\xspace} 
%\renewcommand\arcsec{\mbox{$^{\prime\prime}$}\xspace} 

\newcommand{\todo}[1]{\textcolor{red}{#1}}
\newcommand{\okinfinal}[1]{{#1}}

\hyphenation{kruijs-sen}

%% only needed if not aastex
%\newcommand{\keywords}[1]{}
%\newcommand{\email}[1]{}
%\newcommand{\affil}[1]{}


%aastex hack
%\newcommand\arcdeg{\mbox{$^\circ$}}%
%\newcommand\arcmin{\mbox{$^\prime$}\xspace}%
%\newcommand\arcsec{\mbox{$^{\prime\prime}$}\xspace}%

%\newcommand\epsscale[1]{\gdef\eps@scaling{#1}}
%
%\newcommand\plotone[1]{%
% \typeout{Plotone included the file #1}
% \centering
% \leavevmode
% \includegraphics[width={\eps@scaling\columnwidth}]{#1}%
%}%
%\newcommand\plottwo[2]{{%
% \typeout{Plottwo included the files #1 #2}
% \centering
% \leavevmode
% \columnwidth=.45\columnwidth
% \includegraphics[width={\eps@scaling\columnwidth}]{#1}%
% \hfil
% \includegraphics[width={\eps@scaling\columnwidth}]{#2}%
%}}%


%\newcommand\farcm{\mbox{$.\mkern-4mu^\prime$}}%
%\let\farcm\farcm
%\newcommand\farcs{\mbox{$.\!\!^{\prime\prime}$}}%
%\let\farcs\farcs
%\newcommand\fp{\mbox{$.\!\!^{\scriptscriptstyle\mathrm p}$}}%
%\newcommand\micron{\mbox{$\mu$m}}%
%\def\farcm{%
% \mbox{.\kern -0.7ex\raisebox{.9ex}{\scriptsize$\prime$}}%
%}%
%\def\farcs{%
% \mbox{%
%  \kern  0.13ex.%
%  \kern -0.95ex\raisebox{.9ex}{\scriptsize$\prime\prime$}%
%  \kern -0.1ex%
% }%
%}%

\def\Figure#1#2#3#4#5{
\begin{figure*}[!htp]
\includegraphics[scale=#4,width=#5]{#1}
\caption{#2}
\label{#3}
\end{figure*}
}

\def\FigureOneCol#1#2#3#4#5{
\begin{figure}[!htp]
\includegraphics[scale=#4,width=#5]{#1}
\caption{#2}
\label{#3}
\end{figure}
}


\def\WrapFigure#1#2#3#4#5#6{
\begin{wrapfigure}{#6}{0.5\textwidth}
\includegraphics[scale=#4,width=#5]{#1}
\caption{#2}
\label{#3}
\end{wrapfigure}
}

% % #1 - filename
% % #2 - caption
% % #3 - label
% % #4 - epsscale
% % #5 - R or L?
% \def\WrapFigure#1#2#3#4#5#6{
% \begin{wrapfigure}[#6]{#5}{0.45\textwidth}
% %  \centercaption
% %  \vspace{-14pt}
%   \epsscale{#4}
%   \includegraphics[scale=#4]{#1}
%   \caption{#2}
%   \label{#3}
% \end{wrapfigure}
% }

\def\RotFigure#1#2#3#4#5{
\begin{sidewaysfigure*}[!htp]
\includegraphics[scale=#4,width=#5]{#1}
\caption{#2}
\label{#3}
\end{sidewaysfigure*}
}

\def\FigureSVG#1#2#3#4{
\begin{figure*}[!htp]
    \def\svgwidth{#4}
    \input{#1}
    \caption{#2}
    \label{#3}
\end{figure*}
}

% originally intended to be included in a two-column paper
% this is in includegraphics: ,width=3in
% but, not for thesis
\def\OneColFigure#1#2#3#4#5{
\begin{figure}[!htpb]
\epsscale{#4}
\includegraphics[scale=#4,angle=#5]{#1}
\caption{#2}
\label{#3}
\end{figure}
}

\def\SubFigure#1#2#3#4#5{
\begin{figure*}[!htp]
\addtocounter{figure}{-1}
\epsscale{#4}
\includegraphics[angle=#5]{#1}
\caption{#2}
\label{#3}
\end{figure*}
}


\def\FigureTwo#1#2#3#4#5#6{
\begin{figure*}[!htp]
\subfigure[]{ \includegraphics[scale=#5,width=#6]{#1} }
\subfigure[]{ \includegraphics[scale=#5,width=#6]{#2} }
\caption{#3}
\label{#4}
\end{figure*}
}

\def\FigureTwoAA#1#2#3#4#5#6{
\begin{figure*}[!htp]
\subfigure[]{ \includegraphics[scale=#5,width=#6]{#1} }
\subfigure[]{ \includegraphics[scale=#5,width=#6]{#2} }
\caption{#3}
\label{#4}
\end{figure*}
}

\newenvironment{rotatepage}
{}{}


\def\RotFigureTwoAA#1#2#3#4#5#6{
\begin{rotatepage}
\begin{sidewaysfigure*}[!htp]
\subfigure[]{ \includegraphics[scale=#5,width=#6]{#1} }
\\
\subfigure[]{ \includegraphics[scale=#5,width=#6]{#2} }
\caption{#3}
\label{#4}
\end{sidewaysfigure*}
\end{rotatepage}
}

\def\RotFigureThreeAA#1#2#3#4#5#6#7{
\begin{rotatepage}
\begin{sidewaysfigure*}[!htp]
\subfigure[]{ \includegraphics[scale=#6,width=#7]{#1} }
\\
\subfigure[]{ \includegraphics[scale=#6,width=#7]{#2} }
\\
\subfigure[]{ \includegraphics[scale=#6,width=#7]{#3} }
\caption{#4}
\label{#5}
\end{sidewaysfigure*}
\end{rotatepage}
\clearpage
}

\def\FigureThreeAA#1#2#3#4#5#6#7{
\begin{figure*}[!htp]
\subfigure[]{ \includegraphics[scale=#6,width=#7]{#1} }
\subfigure[]{ \includegraphics[scale=#6,width=#7]{#2} }
\subfigure[]{ \includegraphics[scale=#6,width=#7]{#3} }
\caption{#4}
\label{#5}
\end{figure*}
}



\def\SubFigureTwo#1#2#3#4#5{
\begin{figure*}[!htp]
\addtocounter{figure}{-1}
\epsscale{#5}
\plottwo{#1}{#2}
\caption{#3}
\label{#4}
\end{figure*}
}

\def\FigureFour#1#2#3#4#5#6{
\begin{figure*}[!htp]
\subfigure[]{ \includegraphics[width=0.5\textwidth]{#1} }
\subfigure[]{ \includegraphics[width=0.5\textwidth]{#2} }
\subfigure[]{ \includegraphics[width=0.5\textwidth]{#3} }
\subfigure[]{ \includegraphics[width=0.5\textwidth]{#4} }
\caption{#5}
\label{#6}
\end{figure*}
}

\def\FigureFourPDF#1#2#3#4#5#6{
\begin{figure*}[!htp]
\subfigure[]{ \includegraphics[width=3in,type=pdf,ext=.pdf,read=.pdf]{#1} }
\subfigure[]{ \includegraphics[width=3in,type=pdf,ext=.pdf,read=.pdf]{#2} }
\subfigure[]{ \includegraphics[width=3in,type=pdf,ext=.pdf,read=.pdf]{#3} }
\subfigure[]{ \includegraphics[width=3in,type=pdf,ext=.pdf,read=.pdf]{#4} }
\caption{#5}
\label{#6}
\end{figure*}
}

\def\FigureThreePDF#1#2#3#4#5{
\begin{figure*}[!htp]
\subfigure[]{ \includegraphics[width=3in,type=pdf,ext=.pdf,read=.pdf]{#1} }
\subfigure[]{ \includegraphics[width=3in,type=pdf,ext=.pdf,read=.pdf]{#2} }
\subfigure[]{ \includegraphics[width=3in,type=pdf,ext=.pdf,read=.pdf]{#3} }
\caption{#4}
\label{#5}
\end{figure*}
}

\def\Table#1#2#3#4#5{
%\renewcommand{\thefootnote}{\alph{footnote}}
\begin{table}
\caption{#2}
\label{#3}
    \begin{tabular}{#1}
        \hline\hline
        #4
        \hline
        #5
        \hline
    \end{tabular}
\end{table}
%\renewcommand{\thefootnote}{\arabic{footnote}}
}


%\def\Table#1#2#3#4#5#6{
%%\renewcommand{\thefootnote}{\alph{footnote}}
%\begin{deluxetable}{#1}
%\tablewidth{0pt}
%\tabletypesize{\footnotesize}
%\tablecaption{#2}
%\tablehead{#3}
%\startdata
%\label{#4}
%#5
%\enddata
%\bigskip
%#6
%\end{deluxetable}
%%\renewcommand{\thefootnote}{\arabic{footnote}}
%}

%\def\tablenotetext#1#2{
%\footnotetext[#1]{#2}
%}

% \def\LongTable#1#2#3#4#5#6#7#8{
% % required to get tablenotemark to work: http://www2.astro.psu.edu/users/stark/research/psuthesis/longtable.html
% \renewcommand{\thefootnote}{\alph{footnote}}
% \begin{longtable}{#1}
% \caption[#2]{#2}
% \label{#4} \\
% 
%  \\
% \hline 
% #3 \\
% \hline
% \endfirsthead
% 
% \hline
% #3 \\
% \hline
% \endhead
% 
% \hline
% \multicolumn{#8}{r}{{Continued on next page}} \\
% \hline
% \endfoot
% 
% \hline 
% \endlastfoot
% #7 \\
% 
% #5
% \hline
% #6 \\
% 
% \end{longtable}
% \renewcommand{\thefootnote}{\arabic{footnote}}
% }

\def\TallFigureTwo#1#2#3#4#5#6{
\begin{figure*}[htp]
\epsscale{#5}
\subfigure[]{ \includegraphics[width=#6]{#1} }
\subfigure[]{ \includegraphics[width=#6]{#2} }
\caption{#3}
\label{#4}
\end{figure*}
}