Changes
- updated CheckM to v1.1.2
- added tool version to App name in display.yaml
- changed defaults to 90/5 in Filter with CheckM App
- removed bin_qa_plot from report (no longer generated by CheckM)
Changes
- fixed missing folder in unit tests
Changes
- updated kbase module paths in lib to installed_clients
- updated CheckM to v1.0.18
- updated KBase Docker base image to sdkbase2:python and added Cython lib fix
- added App that filters BinnedContigs by Completeness / Contamination
- split Plot and Table HTML reports into separate pages
- indicate in Table HTML report which bins were filtered out by QC
- added TSV summary table for download
- set thread count explicitly to 4
Changes
- changed citation format to PLOS
Changes
- Added Genome and GenomeSet input types
Changes
- Added choice to use reduced or full Reference Tree to input widget
- Changed and save_all_plots input widgets from checkbox to dropdown
- Removed save_all_plots option and made that default behavior
- Added AssemblySet input type
Changes
- Updated CheckM to v1.0.8 which fixes failure with --reduced_tree for certain ribosomal proteins
Changes
- Fix infinite recursion in output folder compression
- Fix running on empty FASTA
- Initial release