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return GTF file format for MetaGenome object #196

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Tianhao-Gu opened this issue Apr 17, 2021 · 0 comments
Open

return GTF file format for MetaGenome object #196

Tianhao-Gu opened this issue Apr 17, 2021 · 0 comments

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@Tianhao-Gu
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is_gtf argument in metagenome_to_gff is not effective

If I read code correctly, for MetaGenome, the export method will return the gff_handle_ref shock file directly and ignore the is_gtf argument.

https://github.com/kbaseapps/GenomeFileUtil/blob/master/lib/GenomeFileUtil/core/GenomeToGFF.py#L66
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@Tianhao-Gu