From 3dc148d0c370f726f824bcb5964f9823bd58e8a3 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Tue, 18 Jun 2024 11:07:30 -0400
Subject: [PATCH 01/24] change JSON download to use the new export to staging
 app

---
 .../kbaseNarrativeDownloadPanel.js            | 31 +++++++++----------
 1 file changed, 14 insertions(+), 17 deletions(-)

diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index bafbb46e55..65a97bf2fc 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -109,6 +109,16 @@ define([
                             }
                         );
                     });
+                } else if (descr.name.toLocaleLowerCase() === 'json') {
+                    $dlBtn.click(() => {
+                        Jupyter.narrative.addAndPopulateApp(
+                            'kb_staging_exporter/export_json_to_staging',
+                            'dev',
+                            {
+                                input_ref: self.objName,
+                            }
+                        );
+                    });
                 } else {
                     $dlBtn.click(() => {
                         $btnTd.find('.kb-data-list-btn').prop('disabled', true);
@@ -120,24 +130,11 @@ define([
 
             const downloaders = self.prepareDownloaders(self.type);
             downloaders.forEach((dl) => addDownloader(dl));
+            addDownloader({
+                name: 'JSON',
+                local_function: ''
+            });
 
-            $btnTd.append(
-                $('<button>')
-                    .addClass('kb-data-list-btn')
-                    .append('JSON')
-                    .click(() => {
-                        const urlSuffix =
-                            '/download?' +
-                            'ref=' +
-                            encodeURIComponent(self.ref) +
-                            '&url=' +
-                            encodeURIComponent(self.wsUrl) +
-                            '&wszip=1' +
-                            '&name=' +
-                            encodeURIComponent(self.objName + '.JSON.zip');
-                        self.downloadFile(urlSuffix);
-                    })
-            );
             $btnTd.append(
                 $('<button>')
                     .addClass('kb-data-list-cancel-btn')

From f069ed60f798eb409c1830bb0455df9f553a7a80 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Tue, 18 Jun 2024 11:33:03 -0400
Subject: [PATCH 02/24] add wildcard to selecting objects by type

---
 kbase-extension/static/kbase/js/common/data.js | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/kbase-extension/static/kbase/js/common/data.js b/kbase-extension/static/kbase/js/common/data.js
index c9cb37b13e..8436c82a65 100644
--- a/kbase-extension/static/kbase/js/common/data.js
+++ b/kbase-extension/static/kbase/js/common/data.js
@@ -5,6 +5,9 @@ define(['kb_service/client/workspace', 'kb_service/utils', 'common/runtime'], (
 ) => {
     'use strict';
     function filterObjectInfoByType(objects, types) {
+        if (types.includes('*')) {
+            return objects.filter((item) => item !== undefined);
+        }
         return objects
             .map((objectInfo) => {
                 const type = objectInfo.typeModule + '.' + objectInfo.typeName;

From 4d6aec2e811ec81047d8730830150a996d788613 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Tue, 18 Jun 2024 17:13:05 -0400
Subject: [PATCH 03/24] add tests for select input wildcard

---
 .../input/select2ObjectinputSpec.js           | 138 +++++++++++-------
 1 file changed, 87 insertions(+), 51 deletions(-)

diff --git a/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js b/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js
index 59bfa135e8..5a89dda2ef 100644
--- a/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js
+++ b/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js
@@ -11,7 +11,7 @@ define([
 
     const AUTH_TOKEN = 'fakeAuthToken';
     const readsItem = [
-            3,
+            6,
             'small.fq_reads',
             'KBaseFile.SingleEndLibrary-2.2',
             '2018-01-18T22:26:25+0000',
@@ -36,8 +36,21 @@ define([
             628,
             {},
         ],
-        dummyData = [readsItem, readsItem2],
-        dummyObjInfo = [objectify(readsItem), objectify(readsItem2)];
+        genomeItem = [
+            3,
+            'some_small_genome',
+            'KBaseGenomes.Genome-1.0',
+            '2024-06-18T22:26:27+0000',
+            1,
+            'wjriehl',
+            25022,
+            'wjriehl:narrative12345',
+            '9876543210',
+            628,
+            {}
+        ],
+        dummyData = [readsItem, readsItem2, genomeItem],
+        dummyObjInfo = [objectify(readsItem), objectify(readsItem2), objectify(genomeItem)];
     let runtime;
 
     function objectify(infoArr) {
@@ -59,16 +72,16 @@ define([
         };
     }
 
-    function buildTestConfig(required, defaultValue, bus) {
+    function buildTestConfig(required, defaultValue, bus, objTypes) {
         return {
             parameterSpec: {
                 data: {
-                    defaultValue: defaultValue,
+                    defaultValue,
                     nullValue: '',
                     constraints: {
-                        required: required,
-                        defaultValue: defaultValue,
-                        types: ['KBaseFile.SingleEndLibrary'],
+                        required,
+                        defaultValue,
+                        types: objTypes,
                     },
                 },
             },
@@ -77,14 +90,11 @@ define([
     }
 
     function updateData(dataset, objectInfo) {
-        dataset = dataset || dummyData;
-        objectInfo = objectInfo || dummyObjInfo;
-
         runtime.bus().set(
             {
                 data: dataset,
                 timestamp: new Date().getTime(),
-                objectInfo: objectInfo,
+                objectInfo,
             },
             {
                 channel: 'data',
@@ -101,6 +111,12 @@ define([
             defaultValue = 'apple',
             fakeServiceUrl = 'https://ci.kbase.us/services/fake_taxonomy_service';
 
+        const buildWidget = (objTypes) => {
+            testConfig = buildTestConfig(required, defaultValue, bus, objTypes);
+            widget = Select2ObjectInput.make(testConfig);
+            return widget;
+        }
+
         beforeEach(() => {
             container = document.createElement('div');
             runtime = Runtime.make();
@@ -112,7 +128,6 @@ define([
             bus = runtime.bus().makeChannelBus({
                 description: 'select input testing',
             });
-            testConfig = buildTestConfig(required, defaultValue, bus);
 
             jasmine.Ajax.install();
 
@@ -163,8 +178,7 @@ define([
                 response: JSON.stringify(taxonSearchInfo),
             });
 
-            updateData();
-            widget = Select2ObjectInput.make(testConfig);
+            updateData(dummyData, dummyObjInfo);
         });
 
         afterEach(async () => {
@@ -180,6 +194,7 @@ define([
         });
 
         it('Should be instantiable', () => {
+            buildWidget(["KBaseGenomes.Genome"]);
             expect(widget).toEqual(jasmine.any(Object));
             ['start', 'stop'].forEach((fn) => {
                 expect(widget[fn]).toBeDefined();
@@ -189,11 +204,9 @@ define([
         });
 
         describe('the started widget', () => {
-            beforeEach(async () => {
-                await widget.start({ node: container });
-            });
-
             it('Should start and stop', async () => {
+                buildWidget(["KBaseGenomes.Genome"]);
+                await widget.start({ node: container });
                 expect(container.childElementCount).toBeGreaterThan(0);
                 const input = container.querySelector('select[data-element="input"]');
                 expect(input).toBeDefined();
@@ -226,42 +239,65 @@ define([
                 });
             });
 
-            it('Should respond to changed select2 option', async () => {
-                const initialNodeStructure = container.innerHTML;
-                const $select = $(container).find('select');
-                const $search =
-                    $select.data('select2').dropdown.$search ||
-                    $select.data('select2').selection.$search;
+            const objTypeSets = [
+                ['KBaseFile.SingleEndLibrary'],
+                ['KBaseGenomes.Genome'],
+                ['KBaseFile.SingleEndLibrary', 'KBaseGenomes.Genome'],
+                ['*']
+            ];
+            for (const typeSet of objTypeSets) {
+                it(`Should respond to changed select2 option with obj types ${typeSet}`, async () => {
+                    buildWidget(typeSet);
+                    await widget.start({node: container});
+                    const initialNodeStructure = container.innerHTML;
+                    const $select = $(container).find('select');
+                    const $search =
+                        $select.data('select2').dropdown.$search ||
+                        $select.data('select2').selection.$search;
 
-                $search.val('small').trigger('input');
-                // triggers a fake search, which returns readsItem and readsItem2
-                $select.trigger({
-                    type: 'select2:select',
-                    params: {
-                        data: {},
-                    },
-                });
-                await TestUtil.wait(1000);
+                    $search.val('small').trigger('input');
+                    // triggers a fake search, which returns readsItem and readsItem2
+                    $select.trigger({
+                        type: 'select2:select',
+                        params: {
+                            data: {},
+                        },
+                    });
+                    await TestUtil.wait(1000);
 
-                // the DOM structure of the select2 element has changed
-                expect(initialNodeStructure).not.toEqual(container.innerHTML);
-                dummyObjInfo.forEach((obj) => {
-                    expect(container.querySelector('select').textContent).toContain(obj.name);
-                    expect($select.data('select2').$results[0].textContent).toContain(obj.name);
-                });
+                    // the DOM structure of the select2 element has changed
+                    expect(initialNodeStructure).not.toEqual(container.innerHTML);
 
-                let validationMessage;
-                bus.on('validation', (msg) => {
-                    validationMessage = msg;
-                });
-                // set the model value, which triggers a validation message
-                $select.val('stuff').trigger('change');
-                await TestUtil.wait(1000);
-                expect(validationMessage).toEqual({
-                    errorMessage: undefined,
-                    diagnosis: Constants.DIAGNOSIS.OPTIONAL_EMPTY,
+                    // split our (few) objects based on type set used.
+                    const [expected, notExpected] = dummyObjInfo.reduce(([exp, notExp], obj) => {
+                        for (const objType of typeSet) {
+                            if (obj.type.startsWith(objType) || objType === '*') {
+                                return [[...exp, obj], notExp];
+                            }
+                        }
+                        return [exp, [...notExp, obj]];
+                    }, [[], []]);
+                    expected.forEach((obj) => {
+                        expect(container.querySelector('select').textContent).toContain(obj.name);
+                        expect($select.data('select2').$results[0].textContent).toContain(obj.name);
+                    });
+                    notExpected.forEach((obj) => {
+                        expect(container.querySelector('select').textContent).not.toContain(obj.name);
+                    });
+
+                    let validationMessage;
+                    bus.on('validation', (msg) => {
+                        validationMessage = msg;
+                    });
+                    // set the model value, which triggers a validation message
+                    $select.val('stuff').trigger('change');
+                    await TestUtil.wait(1000);
+                    expect(validationMessage).toEqual({
+                        errorMessage: undefined,
+                        diagnosis: Constants.DIAGNOSIS.OPTIONAL_EMPTY,
+                    });
                 });
-            });
+            }
         });
     });
 });

From bcec61f0a37fced6a3121165d41c06d152dfbd5c Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 24 Jun 2024 17:08:23 -0400
Subject: [PATCH 04/24] rework existing download panel tests, add TODOs

---
 .../kbaseNarrativeDownloadPanel.js            |  13 +-
 .../kbaseNarrativeDownloadPanel-spec.js       | 145 ++++++++----------
 2 files changed, 77 insertions(+), 81 deletions(-)

diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index 65a97bf2fc..786f8ced4f 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -16,6 +16,7 @@ define([
     return KBWidget({
         name: 'kbaseNarrativeDownloadPanel',
         version: '1.0.0',
+        // TODO: remove / refactor duplication in options.
         options: {
             token: null,
             type: null,
@@ -28,9 +29,8 @@ define([
         type: null, // Type of workspace object to show downloaders for
         objId: null,
         loadingImage: Config.get('loading_gif'),
-        wsUrl: Config.url('workspace'),
-        ujsURL: Config.url('user_and_job_state'),
         shockURL: Config.url('shock'),
+        // TODO: remove data_import_export code
         exportURL: Config.url('data_import_export'),
         useDynamicDownloadSupport: false,
         nmsURL: Config.url('narrative_method_store'),
@@ -54,9 +54,11 @@ define([
             const lastUpdateTime = this.downloadSpecCache['lastUpdateTime'];
             if (lastUpdateTime) {
                 this.render();
+                return Promise.resolve(this);
             } else {
+                // TODO: remove this, and fetch downloader info from NarrativeService, in a TBD function.
                 const nms = new NarrativeMethodStore(this.nmsURL, { token: this.token });
-                Promise.resolve(
+                return Promise.resolve(
                     nms.list_categories({ load_methods: 0, load_apps: 0, load_types: 1 })
                 )
                     .then((data) => {
@@ -76,18 +78,20 @@ define([
                         this.downloadSpecCache['types'] = types;
                         this.downloadSpecCache['lastUpdateTime'] = Date.now();
                         this.render();
+                        return this;
                     })
                     .catch((error) => {
                         this.showError(error);
+                        return this;
                     });
             }
-            return this;
         },
 
         render: function () {
             const self = this;
             const downloadPanel = this.$elem;
 
+            // TODO: migrate to SCSS
             const $labeltd = $('<td>')
                 .css({ 'white-space': 'nowrap', padding: '1px' })
                 .append('Export as:');
@@ -151,6 +155,7 @@ define([
             downloadPanel.append(self.$statusDiv.hide());
         },
 
+        // TODO: move this to result of as-yet-unwritten NarrativeService call
         prepareDownloaders: function (type) {
             const ret = [];
             if (!this.downloadSpecCache['types']) {
diff --git a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
index c466f5a3cf..e67229b48c 100644
--- a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
+++ b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
@@ -4,11 +4,25 @@ define([
     'base/js/namespace',
     'narrativeMocks',
     'testUtil',
-], ($, kbaseNarrativeDownloadPanel, Jupyter, Mocks, TestUtil) => {
+    'narrativeConfig'
+], ($, kbaseNarrativeDownloadPanel, Jupyter, Mocks, TestUtil, Config) => {
     'use strict';
 
-    describe('The kbaseNarrativeDownloadPanel widget', () => {
+    fdescribe('The kbaseNarrativeDownloadPanel widget', () => {
         let $div = null;
+        const ws = 1111,
+            oid = 2222,
+            ver = 3333,
+            name = 'fake_test_object',
+            objType = 'FakeModule.FakeType',
+            saveDate = '2018-08-03T00:17:04+0000',
+            userId = 'fakeUser',
+            wsName = 'fakeWs',
+            checksum = '12345',
+            meta = {},
+            size = 1234567,
+            upa = `${ws}/${oid}/${ver}`;
+
         beforeEach(() => {
             jasmine.Ajax.install();
             const AUTH_TOKEN = 'fakeAuthToken';
@@ -27,95 +41,72 @@ define([
             TestUtil.clearRuntime();
         });
 
-        it('Should properly load with a valid upa', () => {
-            const ws = 1111,
-                oid = 2222,
-                ver = 3333,
-                name = 'fake_test_object',
-                objType = 'FakeModule.FakeType-7.7',
-                saveDate = '2018-08-03T00:17:04+0000',
-                userId = 'fakeUser',
-                wsName = 'fakeWs',
-                checksum = '12345',
-                meta = {},
-                size = 1234567,
-                upa = String(ws) + '/' + String(oid) + '/' + String(ver);
+        const exportCases = [
+            ['single method', { FAKE: 'fake_method' }],
+            ['a staging method', { FAKE: 'fake_method', STAGING: 'fake_staging_method' }],
+            ['no downloaders', {}]
+        ];
+        exportCases.forEach((exportCase) => {
+            it(`Should properly load with ${exportCase[0]}`, async () => {
+                const exporters = exportCase[1];
+                await new kbaseNarrativeDownloadPanel($div, {
+                    token: null,
+                    type: objType,
+                    objId: oid,
+                    ref: upa,
+                    objName: name,
+                    downloadSpecCache: {
+                        lastUpdateTime: 100,
+                        types: {
+                            [objType]: { export_functions: exporters },
+                        },
+                    },
+                });
+                const exportBtns = $div.find('.kb-data-list-btn');
+                const names = Object.keys(exporters);
+                expect(exportBtns.length).toEqual(1 + names.length);
+                [...names, 'JSON'].forEach((exporterName, idx) => {
+                    expect(exportBtns[idx].textContent).toContain(exporterName);
+                });
+                expect($div.find('.kb-data-list-cancel-btn').html()).toContain('Cancel');
+            });
+        });
 
-            jasmine.Ajax.stubRequest('https://ci.kbase.us/services/ws').andReturn({
+        it('Should load after fetching exporter info from NMS', async () => {
+            jasmine.Ajax.stubRequest(
+                Config.url('narrative_method_store'),
+                /NarrativeMethodStore.list_categories/
+            ).andReturn({
                 status: 200,
-                statusText: 'success',
+                statusText: 'HTTP/1 200 OK',
                 contentType: 'application/json',
-                responseHeaders: '',
                 responseText: JSON.stringify({
                     version: '1.1',
-                    result: [
-                        {
-                            infos: [
-                                [
-                                    oid,
-                                    name,
-                                    objType,
-                                    saveDate,
-                                    ver,
-                                    userId,
-                                    ws,
-                                    wsName,
-                                    checksum,
-                                    size,
-                                    meta,
-                                ],
-                            ],
-                            paths: [[upa]],
-                        },
-                    ],
-                }),
+                    id: '12345',
+                    result: [{}, {}, {}, {
+                        'FakeModule.FakeType': {
+                            export_functions: {
+                                SOME_FORMAT: 'export_as_some_format'
+                            }
+                        }
+                    }]
+                })
             });
 
-            new kbaseNarrativeDownloadPanel($div, {
+            await new kbaseNarrativeDownloadPanel($div, {
                 token: null,
                 type: objType,
                 objId: oid,
                 ref: upa,
                 objName: name,
-                downloadSpecCache: {
-                    lastUpdateTime: 100,
-                    types: {
-                        [objType]: { export_functions: { FAKE: 'fake_method' } },
-                    },
-                },
+                downloadSpecCache: {}
             });
-            expect($div.html()).toContain('JSON');
-            expect($div.html()).toContain('FAKE');
-        });
-
-        it('Should load and register a Staging app button', () => {
-            const ws = 1111,
-                oid = 2222,
-                ver = 3333,
-                name = 'fake_test_object',
-                objType = 'KBaseGenomes.Genome',
-                upa = String(ws) + '/' + String(oid) + '/' + String(ver);
-
-            new kbaseNarrativeDownloadPanel($div, {
-                token: null,
-                type: objType,
-                objName: name,
-                objId: oid,
-                ref: upa,
-                downloadSpecCache: {
-                    lastUpdateTime: 100,
-                    types: {
-                        [objType]: {
-                            export_functions: {
-                                FAKE: 'fake_method',
-                                STAGING: 'staging_method',
-                            },
-                        },
-                    },
-                },
+            const exportBtns = $div.find('.kb-data-list-btn');
+            expect(exportBtns.length).toEqual(2);
+            ['SOME_FORMAT', 'JSON'].forEach((exporterName, idx) => {
+                expect(exportBtns[idx].textContent).toContain(exporterName);
             });
-
-            expect($div.html()).toContain('STAGING');
+            expect($div.find('.kb-data-list-cancel-btn').html()).toContain('Cancel');
         });
     });
 });

From e2cfedf204e5f8309ed1f24d192dae5f6b581af3 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 24 Jun 2024 17:14:42 -0400
Subject: [PATCH 05/24] get the f out of fdescribe

---
 .../spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
index e67229b48c..8e722aac93 100644
--- a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
+++ b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
@@ -8,7 +8,7 @@ define([
 ], ($, kbaseNarrativeDownloadPanel, Jupyter, Mocks, TestUtil, Config) => {
     'use strict';
 
-    fdescribe('The kbaseNarrativeDownloadPanel widget', () => {
+    describe('The kbaseNarrativeDownloadPanel widget', () => {
         let $div = null;
         const ws = 1111,
             oid = 2222,

From 8ac667438772856a89cb0237789e3f408f07c473 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Tue, 25 Jun 2024 10:51:38 -0400
Subject: [PATCH 06/24] remove  from buildWidget test util

---
 test/unit/spec/appWidgets/input/select2ObjectinputSpec.js | 1 -
 1 file changed, 1 deletion(-)

diff --git a/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js b/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js
index 5a89dda2ef..500e42f6ac 100644
--- a/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js
+++ b/test/unit/spec/appWidgets/input/select2ObjectinputSpec.js
@@ -114,7 +114,6 @@ define([
         const buildWidget = (objTypes) => {
             testConfig = buildTestConfig(required, defaultValue, bus, objTypes);
             widget = Select2ObjectInput.make(testConfig);
-            return widget;
         }
 
         beforeEach(() => {

From 9ba307ca62012acd6e4043ef9594f14c041e7cd0 Mon Sep 17 00:00:00 2001
From: ialarmedalien <ialarmedalien@gmail.com>
Date: Wed, 26 Jun 2024 12:04:17 -0700
Subject: [PATCH 07/24] Update GHAs to use main/master version so they don't
 need to be updated so often

---
 .github/codeql.yml                         |  8 ++++----
 .github/workflows/build_and_push_image.yml | 10 +++++-----
 .github/workflows/integration_test.yml     |  6 +++---
 .github/workflows/tag_latest_image.yaml    |  4 ++--
 .github/workflows/unit_test.yml            |  8 ++++----
 package-lock.json                          |  9 +++++----
 6 files changed, 23 insertions(+), 22 deletions(-)

diff --git a/.github/codeql.yml b/.github/codeql.yml
index 3b4adcf8bf..a2e7f81a4e 100644
--- a/.github/codeql.yml
+++ b/.github/codeql.yml
@@ -12,7 +12,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@master
       with:
         # We must fetch at least the immediate parents so that if this is
         # a pull request then we can checkout the head.
@@ -25,7 +25,7 @@ jobs:
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@v3
+      uses: github/codeql-action/init@master
       # Override language selection by uncommenting this and choosing your languages
       # with:
       #   languages: go, javascript, csharp, python, cpp, java
@@ -33,7 +33,7 @@ jobs:
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
-      uses: github/codeql-action/autobuild@v3
+      uses: github/codeql-action/autobuild@master
 
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 https://git.io/JvXDl
@@ -47,4 +47,4 @@ jobs:
     #   make release
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v3
+      uses: github/codeql-action/analyze@master
diff --git a/.github/workflows/build_and_push_image.yml b/.github/workflows/build_and_push_image.yml
index bf952591f9..9deae61428 100644
--- a/.github/workflows/build_and_push_image.yml
+++ b/.github/workflows/build_and_push_image.yml
@@ -18,7 +18,7 @@ jobs:
       name: Check out GitHub Repo
       with:
         ref: "${{ github.event.pull_request.head.sha }}"
-      uses: actions/checkout@v4
+      uses: actions/checkout@main
     -
       name: Set up environment
       run: |
@@ -42,17 +42,17 @@ jobs:
       run: echo "date=$(date -u +'%Y-%m-%dT%H:%M:%SZ')" >> $GITHUB_OUTPUT
     -
       name: Set up Docker Buildx
-      uses: docker/setup-buildx-action@v3
+      uses: docker/setup-buildx-action@master
     -
       name: Log in to the Container registry
-      uses: docker/login-action@v3
+      uses: docker/login-action@master
       with:
         registry: ghcr.io
         username: ${{ secrets.GHCR_USERNAME }}
         password: ${{ secrets.GHCR_TOKEN }}
     -
       name: Build narrative image
-      uses: docker/build-push-action@v5
+      uses: docker/build-push-action@master
       with:
         context: .
         file: ./Dockerfile
@@ -67,7 +67,7 @@ jobs:
           TAG='${{ github.ref }}'
     -
       name: Build version image
-      uses: docker/build-push-action@v5
+      uses: docker/build-push-action@master
       if: ${{ github.base_ref }} == 'main' || ${{ github.base_ref }} == 'develop'
       with:
         context: .
diff --git a/.github/workflows/integration_test.yml b/.github/workflows/integration_test.yml
index 0cacebadf3..c63e97545a 100644
--- a/.github/workflows/integration_test.yml
+++ b/.github/workflows/integration_test.yml
@@ -16,14 +16,14 @@ jobs:
     steps:
     -
       name: Log in to the Container registry
-      uses: docker/login-action@v3
+      uses: docker/login-action@master
       with:
         registry: ghcr.io
         username: ${{ secrets.GHCR_USERNAME }}
         password: ${{ secrets.GHCR_TOKEN }}
     -
       name: Repo checkout
-      uses: actions/checkout@v4
+      uses: actions/checkout@master
     -
       name: Set up environment
       run: |
@@ -48,7 +48,7 @@ jobs:
       run: docker pull ${{ env.APP_IMAGE_TAG }}
     -
       name: Use Node JS 20
-      uses: actions/setup-node@v4
+      uses: actions/setup-node@master
       with:
         node-version: 20
     -
diff --git a/.github/workflows/tag_latest_image.yaml b/.github/workflows/tag_latest_image.yaml
index ee6ea9a4b3..bf3350bca2 100644
--- a/.github/workflows/tag_latest_image.yaml
+++ b/.github/workflows/tag_latest_image.yaml
@@ -16,10 +16,10 @@ jobs:
     - name: Check out GitHub Repo
       with:
         ref: "${{ github.event.pull_request.head.sha }}"
-      uses: actions/checkout@v4
+      uses: actions/checkout@master
     -
       name: Log in to the Container registry
-      uses: docker/login-action@v3
+      uses: docker/login-action@master
       with:
         registry: ghcr.io
         username: ${{ secrets.GHCR_USERNAME }}
diff --git a/.github/workflows/unit_test.yml b/.github/workflows/unit_test.yml
index 053eeba535..25d5ae1bb5 100644
--- a/.github/workflows/unit_test.yml
+++ b/.github/workflows/unit_test.yml
@@ -16,14 +16,14 @@ jobs:
     steps:
     -
       name: Log in to the Container registry
-      uses: docker/login-action@v3
+      uses: docker/login-action@master
       with:
         registry: ghcr.io
         username: ${{ secrets.GHCR_USERNAME }}
         password: ${{ secrets.GHCR_TOKEN }}
     -
       name: Repo checkout
-      uses: actions/checkout@v4
+      uses: actions/checkout@master
     -
       name: Set up environment
       run: |
@@ -58,7 +58,7 @@ jobs:
       continue-on-error: true
     -
       name: Use Node JS 20
-      uses: actions/setup-node@v4
+      uses: actions/setup-node@main
       with:
         node-version: 20
     -
@@ -76,7 +76,7 @@ jobs:
     -
       name: Send to Codecov
       id: send_to_codecov
-      uses: codecov/codecov-action@v4
+      uses: codecov/codecov-action@main
       continue-on-error: true
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/package-lock.json b/package-lock.json
index e46ea37374..175dce860d 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -3432,9 +3432,9 @@
             }
         },
         "node_modules/caniuse-lite": {
-            "version": "1.0.30001636",
-            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001636.tgz",
-            "integrity": "sha512-bMg2vmr8XBsbL6Lr0UHXy/21m84FTxDLWn2FSqMd5PrlbMxwJlQnC2YWYxVgp66PZE+BBNF2jYQUBKCo1FDeZg==",
+            "version": "1.0.30001637",
+            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001637.tgz",
+            "integrity": "sha512-1x0qRI1mD1o9e+7mBI7XtzFAP4XszbHaVWsMiGbSPLYekKTJF7K+FNk6AsXH4sUpc+qrsI3pVgf1Jdl/uGkuSQ==",
             "dev": true,
             "funding": [
                 {
@@ -3449,7 +3449,8 @@
                     "type": "github",
                     "url": "https://github.com/sponsors/ai"
                 }
-            ]
+            ],
+            "license": "CC-BY-4.0"
         },
         "node_modules/chalk": {
             "version": "2.4.2",

From 199744282f0d3f32d2f7acc4abb1bdf128c461b5 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Fri, 28 Jun 2024 23:09:26 -0400
Subject: [PATCH 08/24] refactor download panel (more or less), add end-to-end
 happy path test

---
 .../kbaseNarrativeDownloadPanel.js            | 391 +++++++-----------
 .../kbaseNarrativeDownloadPanel-spec.js       | 201 +++++++--
 2 files changed, 316 insertions(+), 276 deletions(-)

diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index 786f8ced4f..3b55c5277c 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -1,3 +1,4 @@
+/* eslint-disable no-console */
 /**
  * "Download" panel for each element in data list panel.
  * @author Roman Sutormin <rsutormin@lbl.gov>
@@ -8,11 +9,14 @@ define([
     'kbwidget',
     'jquery',
     'narrativeConfig',
+    'util/kbaseApiUtil',
     'kbase-client-api',
     'kbase-generic-client-api',
     'base/js/namespace',
-], (Promise, KBWidget, $, Config, kbase_client_api, GenericClient, Jupyter) => {
-    'use strict';
+], (Promise, KBWidget, $, Config, APIUtil, kbase_client_api, GenericClient, Jupyter) => {
+    const STAGING_EXPORT_APP = 'kb_staging_exporter/export_to_staging';
+    const JSON_EXPORT_APP = 'kb_staging_exporter/export_json_to_staging';
+
     return KBWidget({
         name: 'kbaseNarrativeDownloadPanel',
         version: '1.0.0',
@@ -25,70 +29,71 @@ define([
             objName: null,
             downloadSpecCache: null, // {'lastUpdateTime': <millisec.>, 'types': {<type>: <spec>}}
         },
-        token: null,
-        type: null, // Type of workspace object to show downloaders for
-        objId: null,
         loadingImage: Config.get('loading_gif'),
         shockURL: Config.url('shock'),
-        // TODO: remove data_import_export code
         exportURL: Config.url('data_import_export'),
-        useDynamicDownloadSupport: false,
         nmsURL: Config.url('narrative_method_store'),
         eeURL: Config.url('execution_engine2'),
-        srvWizURL: Config.url('service_wizard'),
         timer: null,
-        downloadSpecCache: null, // {'lastUpdateTime': <millisec.>, 'types': {<type>: <spec>}}
 
         init: function (options) {
             this._super(options);
-            this.token = this.options.token;
-            this.type = this.options.type;
-            this.objId = this.options.objId;
-            this.objName = this.options.objName;
-            this.ref = this.options.ref;
+            Object.assign(this, options);
             if (!this.objId) {
-                const refPathItems = this.ref.split(';');
-                this.objId = refPathItems[refPathItems.length - 1].trim().split('/')[1];
+                this.objId = this.ref.split(';').pop().trim().split('/')[1];
             }
-            this.downloadSpecCache = options['downloadSpecCache'];
-            const lastUpdateTime = this.downloadSpecCache['lastUpdateTime'];
-            if (lastUpdateTime) {
+            this.downloadSpecCache = options.downloadSpecCache;
+            if (this.downloadSpecCache.lastUpdateTime) {
                 this.render();
-                return Promise.resolve(this);
+                return this;
             } else {
                 // TODO: remove this, and fetch downloader info from NarrativeService, in a TBD function.
+                // eslint-disable-next-line no-undef
                 const nms = new NarrativeMethodStore(this.nmsURL, { token: this.token });
                 return Promise.resolve(
                     nms.list_categories({ load_methods: 0, load_apps: 0, load_types: 1 })
                 )
                     .then((data) => {
-                        const aTypes = data[3],
-                            types = {};
-                        Object.keys(aTypes).forEach((key) => {
-                            if (aTypes[key]['loading_error']) {
-                                console.error(
-                                    'Error loading type [' +
-                                        key +
-                                        ']: ' +
-                                        aTypes[key]['loading_error']
-                                );
-                            }
-                            types[key] = aTypes[key];
-                        });
-                        this.downloadSpecCache['types'] = types;
-                        this.downloadSpecCache['lastUpdateTime'] = Date.now();
+                        this.updateDownloadSpecCache(data);
                         this.render();
-                        return this;
                     })
-                    .catch((error) => {
-                        this.showError(error);
-                        return this;
-                    });
+                    .catch((error) => this.showError(error))
+                    .finally(() => this);
             }
         },
 
+        updateDownloadSpecCache: function (data) {
+            const types = {};
+            Object.keys(data[3]).forEach((key) => {
+                if (data[3][key].loading_error) {
+                    console.error(`Error loading type [${key}]: ${data[3][key].loading_error}`);
+                }
+                types[key] = data[3][key];
+            });
+            this.downloadSpecCache = {
+                types,
+                lastUpdateTime: Date.now(),
+            };
+        },
+
+        makeDownloaderButton: function (dlInfo, makeCell) {
+            const $dlBtn = $('<button>').addClass('kb-data-list-btn').append(dlInfo.name);
+            $dlBtn.click(() => {
+                if (makeCell) {
+                    Jupyter.narrative.addAndPopulateApp(dlInfo.appId, APIUtil.getAppVersionTag(), {
+                        input_ref: this.objName,
+                    });
+                } else {
+                    $dlBtn.parent().find('.kb-data-list-btn').prop('disabled', true);
+                    this.startDownloader(dlInfo).then(([jobId, wsObjectName]) => {
+                        this.waitForDownloadJob(jobId, wsObjectName);
+                    });
+                }
+            });
+            return $dlBtn;
+        },
+
         render: function () {
-            const self = this;
             const downloadPanel = this.$elem;
 
             // TODO: migrate to SCSS
@@ -100,59 +105,46 @@ define([
                 $('<table>').css({ width: '100%' }).append('<tr>').append($labeltd).append($btnTd)
             );
 
-            const addDownloader = (descr) => {
-                const $dlBtn = $('<button>').addClass('kb-data-list-btn').append(descr.name);
-
-                if (descr.name.toLocaleLowerCase() === 'staging') {
-                    $dlBtn.click(() => {
-                        Jupyter.narrative.addAndPopulateApp(
-                            'kb_staging_exporter/export_to_staging',
-                            'beta',
+            const downloaders = this.prepareDownloaders(this.type);
+            downloaders.forEach((dlInfo) => {
+                if (dlInfo.name.toLocaleLowerCase() === 'staging') {
+                    $btnTd.append(
+                        this.makeDownloaderButton(
                             {
-                                input_ref: self.objName,
-                            }
-                        );
-                    });
-                } else if (descr.name.toLocaleLowerCase() === 'json') {
-                    $dlBtn.click(() => {
-                        Jupyter.narrative.addAndPopulateApp(
-                            'kb_staging_exporter/export_json_to_staging',
-                            'dev',
-                            {
-                                input_ref: self.objName,
-                            }
-                        );
-                    });
+                                name: 'STAGING',
+                                appId: STAGING_EXPORT_APP,
+                            },
+                            true
+                        )
+                    );
                 } else {
-                    $dlBtn.click(() => {
-                        $btnTd.find('.kb-data-list-btn').prop('disabled', true);
-                        self.runDownloader(self.type, self.ref, self.objName, descr);
-                    });
+                    $btnTd.append(this.makeDownloaderButton(dlInfo));
                 }
-                $btnTd.append($dlBtn);
-            };
-
-            const downloaders = self.prepareDownloaders(self.type);
-            downloaders.forEach((dl) => addDownloader(dl));
-            addDownloader({
-                name: 'JSON',
-                local_function: ''
             });
+            $btnTd.append(
+                this.makeDownloaderButton(
+                    {
+                        name: 'JSON',
+                        appId: JSON_EXPORT_APP,
+                    },
+                    true
+                )
+            );
 
             $btnTd.append(
                 $('<button>')
                     .addClass('kb-data-list-cancel-btn')
                     .append('Cancel')
                     .click(() => {
-                        self.stopTimer();
+                        this.stopTimer();
                         downloadPanel.empty();
                     })
             );
 
-            self.$statusDiv = $('<div>').css({ margin: '15px' });
-            self.$statusDivContent = $('<div>');
-            self.$statusDiv.append(self.$statusDivContent);
-            downloadPanel.append(self.$statusDiv.hide());
+            this.$statusDiv = $('<div>').css({ margin: '15px' });
+            this.$statusDivContent = $('<div>');
+            this.$statusDiv.append(this.$statusDivContent);
+            downloadPanel.append(this.$statusDiv.hide());
         },
 
         // TODO: move this to result of as-yet-unwritten NarrativeService call
@@ -167,7 +159,7 @@ define([
                 : this.downloadSpecCache['types'][module];
             if (typeSpec && typeSpec['export_functions']) {
                 Object.keys(typeSpec['export_functions']).forEach((name) => {
-                    ret.push({ name: name, local_function: typeSpec['export_functions'][name] });
+                    ret.push({ name: name, appId: typeSpec['export_functions'][name] });
                 });
             } else {
                 console.log(
@@ -180,47 +172,32 @@ define([
             return ret;
         },
 
-        getVersionTag: function () {
-            let tag = Jupyter.narrative.sidePanel.$methodsWidget.currentTag;
-            if (!tag) {
-                tag = 'release';
-            }
-            return tag;
-        },
-
-        runDownloader: function (type, ref, objId, descr) {
-            // descr is {name: ..., local_function: ...}
+        startDownloader: function (appInfo) {
             this.showMessage(
                 '<img src="' + this.loadingImage + '" /> Export status: Preparing data'
             );
             this.$statusDiv.show();
-            const wsObjectName = objId + '.' + descr.name.replace(/[^a-zA-Z0-9|\.\-_]/g, '_');
-            const tag = this.getVersionTag();
-            const method = descr.local_function.replace('/', '.');
-            const genericClient = new GenericClient(this.eeURL, { token: this.token }, null, false);
+            const wsObjectName =
+                this.objName + '.' + appInfo.name.replace(/[^a-zA-Z0-9|.\-_]/g, '_');
+            const tag = APIUtil.getAppVersionTag();
+            const method = appInfo.appId.replace('/', '.');
+            const eeClient = new GenericClient(this.eeURL, { token: this.token }, null, false);
 
-            Promise.resolve(
-                genericClient.sync_call('execution_engine2.run_job', [
+            return Promise.resolve(
+                eeClient.sync_call('execution_engine2.run_job', [
                     {
                         method: method,
-                        params: [{ input_ref: ref }],
+                        params: [{ input_ref: this.ref }],
                         service_ver: tag,
                         app_id: method,
                     },
                 ])
             )
-                .then((data) => {
-                    const jobId = data[0];
+                .then(([jobId]) => {
                     console.log(
-                        'Running ' +
-                            descr.local_function +
-                            ' (tag="' +
-                            tag +
-                            '"), ' +
-                            'job ID: ' +
-                            jobId
+                        'Running ' + appInfo.appId + ' (tag="' + tag + '"), ' + 'job ID: ' + jobId
                     );
-                    this.waitForSdkJob(jobId, wsObjectName);
+                    return [jobId, wsObjectName];
                 })
                 .catch((error) => {
                     console.error(error);
@@ -228,136 +205,77 @@ define([
                 });
         },
 
-        waitForSdkJob: function (jobId, wsObjectName) {
-            const self = this;
-            const genericClient = new GenericClient(this.eeURL, { token: this.token }, null, false);
+        waitForDownloadJob: function (jobId, wsObjectName) {
+            const eeClient = new GenericClient(this.eeURL, { token: this.token }, null, false);
             let skipLogLines = 0;
-            let lastLogLine = null;
-            const timeLst = function (event) {
-                genericClient.sync_call(
-                    'execution_engine2.check_job',
-                    [{ job_id: jobId }],
-                    (data) => {
-                        const jobState = data[0];
-                        if (jobState['running']) {
-                            genericClient.sync_call(
-                                'execution_engine2.get_job_logs',
-                                [{ job_id: jobId, skip_lines: skipLogLines }],
-                                (data2) => {
-                                    const logLines = data2[0].lines;
-                                    for (let i = 0; i < logLines.length; i++) {
-                                        lastLogLine = logLines[i];
-                                        if (lastLogLine.is_error) {
-                                            console.error('Export logging: ' + lastLogLine.line);
-                                        } else {
-                                            console.log('Export logging: ' + lastLogLine.line);
-                                        }
-                                    }
-                                    skipLogLines += logLines.length;
-                                    const complete = jobState['finished'];
-                                    const error = jobState['error'];
-                                    if (complete) {
-                                        self.stopTimer();
-                                        if (error) {
-                                            console.error(error);
-                                            self.showError(error['message']);
-                                        } else {
-                                            console.log('Export is complete');
-                                            // Starting download from Shock
-                                            self.$statusDiv.hide();
-                                            self.$elem
-                                                .find('.kb-data-list-btn')
-                                                .prop('disabled', false);
-                                            const result = jobState['job_output']['result'];
-                                            self.downloadUJSResults(
-                                                result[0].shock_id,
-                                                self.shockURL,
-                                                wsObjectName
-                                            );
-                                        }
-                                    } else {
-                                        const status =
-                                            skipLogLines == 0
-                                                ? jobState['job_state']
-                                                : lastLogLine.line;
-                                        if (skipLogLines == 0)
-                                            console.log('Export status: ' + status);
-                                        self.showMessage(
-                                            '<img src="' +
-                                                self.loadingImage +
-                                                '" /> ' +
-                                                'Export status: ' +
-                                                status
-                                        );
-                                    }
-                                },
-                                (data) => {
-                                    self.stopTimer();
-                                    console.log(data.error.message);
-                                    self.showError(data.error.message);
-                                }
+            const timeLst = () => {
+                Promise.resolve(
+                    eeClient.sync_call('execution_engine2.check_job', [{ job_id: jobId }])
+                )
+                    .then(([jobState]) => {
+                        console.log('got job state', jobState);
+                        if (!jobState.running) {
+                            return [{}, []];
+                        }
+                        return Promise.resolve(
+                            eeClient.sync_call('execution_engine2.get_job_logs', [
+                                { job_id: jobId, skip_lines: skipLogLines },
+                            ])
+                        ).then((logData) => [jobState, logData[0].lines]);
+                    })
+                    .then(([jobState, logLines]) => {
+                        if (jobState.finished) {
+                            this.stopTimer();
+                            if (jobState.error) {
+                                console.error(jobState.error);
+                                this.showError(jobState.error.message);
+                            } else {
+                                console.log('Export is complete');
+                                this.finishDownload(
+                                    jobState.job_output.result[0].shock_id,
+                                    wsObjectName
+                                );
+                            }
+                        } else if (logLines.length) {
+                            logLines.forEach((line) => console.log(line.line));
+                            skipLogLines += logLines.length;
+                            const line = logLines[logLines.length - 1].line;
+                            const status = skipLogLines === 0 ? jobState.status : line;
+                            this.showMessage(
+                                `<img src="${this.loadingImage}"/> Export status: ${status}`
                             );
                         }
-                    },
-                    (data) => {
-                        self.stopTimer();
-                        console.log(data.error.message);
-                        self.showError(data.error.message);
-                    }
-                );
+                    })
+                    .catch((error) => {
+                        this.stopTimer();
+                        console.log(error);
+                        this.showError(error.error.message);
+                    });
             };
-            self.timer = setInterval(timeLst, 5000);
+
+            this.timer = setInterval(timeLst, 5000);
             timeLst();
         },
 
-        downloadUJSResults: function (shockNode, remoteShockUrl, wsObjectName, unzip) {
-            const self = this;
+        finishDownload: function (shockNode, wsObjectName) {
+            this.$statusDiv.hide();
+            this.$elem.find('.kb-data-list-btn').prop('disabled', false);
             let elems = shockNode.split('/');
-            if (elems.length > 1) shockNode = elems[elems.length - 1];
+            if (elems.length > 1) {
+                shockNode = elems[elems.length - 1];
+            }
             elems = shockNode.split('?');
-            if (elems.length > 0) shockNode = elems[0];
+            if (elems.length > 0) {
+                shockNode = elems[0];
+            }
             console.log('Shock node ID: ' + shockNode);
-            const shockClient = new ShockClient({ url: self.shockURL, token: self.token });
-            const downloadShockNodeWithName = function (name) {
-                let urlSuffix = '/download?id=' + shockNode + '&del=1';
-                if (unzip) {
-                    urlSuffix += '&unzip=' + encodeURIComponent(unzip);
-                } else {
-                    urlSuffix += '&name=' + encodeURIComponent(name);
-                }
-                if (remoteShockUrl) urlSuffix += '&url=' + encodeURIComponent(remoteShockUrl);
-                self.downloadFile(urlSuffix);
-            };
-            downloadShockNodeWithName(wsObjectName + '.zip');
+            const name = encodeURIComponent(wsObjectName + '.zip');
+            const urlSuffix = `/download?id=${shockNode}&del=1&name=${name}&url=${encodeURIComponent(this.shockURL)}`;
+            this.downloadFile(urlSuffix);
         },
 
         downloadFile: function (urlSuffix) {
-            const self = this;
-            if (self.useDynamicDownloadSupport) {
-                const genericClient = new GenericClient(
-                    self.srvWizURL,
-                    { token: self.token },
-                    null,
-                    false
-                );
-                genericClient.sync_call(
-                    'ServiceWizard.get_service_status',
-                    [{ module_name: 'NarrativeDownloadSupport', version: 'dev' }],
-                    (data) => {
-                        const urlPrefix = data[0]['url'];
-                        self.downloadFileInner(urlPrefix + urlSuffix);
-                    },
-                    (error) => {
-                        console.error(error);
-                        self.showError(error);
-                    }
-                );
-            } else {
-                self.downloadFileInner(self.exportURL + urlSuffix);
-            }
-        },
-
-        downloadFileInner: function (url) {
+            const url = this.exportURL + urlSuffix;
             console.log('Downloading url=' + url);
             const hiddenIFrameID = 'hiddenDownloader';
             let iframe = document.getElementById(hiddenIFrameID);
@@ -371,26 +289,23 @@ define([
         },
 
         showMessage: function (msg) {
-            const self = this;
-            self.$statusDivContent.empty();
-            self.$statusDivContent.append(msg);
+            this.$statusDivContent.empty().append(msg);
         },
 
-        showError: function (msg) {
-            const self = this;
-            if (typeof msg === 'object' && msg.error) {
-                msg = msg.error;
-                if (typeof msg === 'object' && msg.message) {
-                    msg = msg.message;
+        showError: function (error) {
+            if (typeof error === 'object') {
+                if (error.error) {
+                    error = error.error;
+                } else if (error.message) {
+                    error = error.message;
                 }
             }
-            self.$statusDivContent.empty();
             // error is final state, so reactivate!
-            self.$elem.find('.kb-data-list-btn').prop('disabled', false);
-            self.$statusDivContent.append(
+            this.$elem.find('.kb-data-list-btn').prop('disabled', false);
+            this.$statusDivContent.empty().append(
                 $('<span>')
                     .css({ color: '#F44336' })
-                    .append('Error: ' + msg)
+                    .append('Error: ' + error)
             );
         },
 
diff --git a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
index 8e722aac93..28397df322 100644
--- a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
+++ b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
@@ -4,31 +4,43 @@ define([
     'base/js/namespace',
     'narrativeMocks',
     'testUtil',
-    'narrativeConfig'
+    'narrativeConfig',
 ], ($, kbaseNarrativeDownloadPanel, Jupyter, Mocks, TestUtil, Config) => {
-    'use strict';
+    const JSON_EXPORT_APP = 'kb_staging_exporter/export_json_to_staging';
+    const STAGING_EXPORT_APP = 'kb_staging_exporter/export_to_staging';
 
-    describe('The kbaseNarrativeDownloadPanel widget', () => {
+    fdescribe('The kbaseNarrativeDownloadPanel widget', () => {
         let $div = null;
         const ws = 1111,
             oid = 2222,
             ver = 3333,
             name = 'fake_test_object',
             objType = 'FakeModule.FakeType',
-            saveDate = '2018-08-03T00:17:04+0000',
-            userId = 'fakeUser',
-            wsName = 'fakeWs',
-            checksum = '12345',
-            meta = {},
-            size = 1234567,
             upa = `${ws}/${oid}/${ver}`;
 
+        const initDownloadPanel = async (authToken, exporterCache) => {
+            return await new kbaseNarrativeDownloadPanel($div, {
+                token: authToken,
+                type: objType,
+                objId: oid,
+                ref: upa,
+                objName: name,
+                downloadSpecCache: exporterCache,
+            });
+        };
+
         beforeEach(() => {
             jasmine.Ajax.install();
             const AUTH_TOKEN = 'fakeAuthToken';
             Mocks.setAuthToken(AUTH_TOKEN);
             Jupyter.narrative = {
                 getAuthToken: () => AUTH_TOKEN,
+                addAndPopulateApp: () => {},
+                sidePanel: {
+                    $methodsWidget: {
+                        currentTag: 'release',
+                    },
+                },
             };
             $div = $('<div>');
         });
@@ -44,24 +56,19 @@ define([
         const exportCases = [
             ['single method', { FAKE: 'fake_method' }],
             ['a staging method', { FAKE: 'fake_method', STAGING: 'fake_staging_method' }],
-            ['no downloaders', {}]
+            ['no downloaders', {}],
         ];
         exportCases.forEach((exportCase) => {
             it(`Should properly load with ${exportCase[0]}`, async () => {
                 const exporters = exportCase[1];
-                await new kbaseNarrativeDownloadPanel($div, {
-                    token: null,
-                    type: objType,
-                    objId: oid,
-                    ref: upa,
-                    objName: name,
-                    downloadSpecCache: {
-                        lastUpdateTime: 100,
-                        types: {
-                            [objType]: { export_functions: exporters },
-                        },
+                const exporterCache = {
+                    lastUpdateTime: 100,
+                    types: {
+                        [objType]: { export_functions: exporters },
                     },
-                });
+                };
+
+                await initDownloadPanel(null, exporterCache);
                 const exportBtns = $div.find('.kb-data-list-btn');
                 const names = Object.keys(exporters);
                 expect(exportBtns.length).toEqual(1 + names.length);
@@ -83,24 +90,22 @@ define([
                 responseText: JSON.stringify({
                     version: '1.1',
                     id: '12345',
-                    result: [{}, {}, {}, {
-                        'FakeModule.FakeType': {
-                            export_functions: {
-                                SOME_FORMAT: 'export_as_some_format'
-                            }
-                        }
-                    }]
-                })
+                    result: [
+                        {},
+                        {},
+                        {},
+                        {
+                            'FakeModule.FakeType': {
+                                export_functions: {
+                                    SOME_FORMAT: 'export_as_some_format',
+                                },
+                            },
+                        },
+                    ],
+                }),
             });
 
-            await new kbaseNarrativeDownloadPanel($div, {
-                token: null,
-                type: objType,
-                objId: oid,
-                ref: upa,
-                objName: name,
-                downloadSpecCache: {}
-            });
+            await initDownloadPanel(null, {});
             const exportBtns = $div.find('.kb-data-list-btn');
             expect(exportBtns.length).toEqual(2);
             ['SOME_FORMAT', 'JSON'].forEach((exporterName, idx) => {
@@ -108,5 +113,125 @@ define([
             });
             expect($div.find('.kb-data-list-cancel-btn').html()).toContain('Cancel');
         });
+
+        it('Should start a "hidden" download job when clicking an exporter', async () => {
+            /* uses mocks
+             *   ee2.run_job
+             *   ee2.check_job
+             *   ee2.job_logs
+             *   DataImportExport url
+             */
+            const fakeJobId = 'dl_job_123',
+                exportApp = 'exporter/export_as_some_format',
+                exporterCache = {
+                    lastUpdateTime: 100,
+                    types: {
+                        [objType]: {
+                            export_functions: {
+                                SOME_FORMAT: exportApp,
+                            },
+                        },
+                    },
+                };
+            // set up mocks here
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /run_job/,
+                response: [fakeJobId],
+            });
+            // instant finish to the job!
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /check_job/,
+                response: {
+                    running: 12345,
+                    finished: 67890,
+                    status: 'completed',
+                    job_output: {
+                        result: [
+                            {
+                                shock_id: 'some_shock_id',
+                            },
+                        ],
+                    },
+                },
+            });
+            // some logs
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /execution_engine2.get_job_logs/,
+                response: {
+                    count: 1,
+                    last_line_number: 1,
+                    lines: [
+                        {
+                            line: 'a bit of log',
+                            is_error: 0,
+                        },
+                    ],
+                },
+            });
+
+            const dlUrlRegex = new RegExp(Config.url('data_import_export'));
+            jasmine.Ajax.stubRequest(dlUrlRegex);
+
+            await initDownloadPanel(null, exporterCache);
+            const exportBtns = $div.find('.kb-data-list-btn');
+
+            await TestUtil.waitForElementState(
+                document,
+                () => {
+                    return document.getElementById('hiddenDownloader') !== null;
+                },
+                () => {
+                    exportBtns[0].click();
+                }
+            );
+            const iframe = document.getElementById('hiddenDownloader');
+            expect(iframe).not.toBeNull();
+            const expectedUrl =
+                'https://ci.kbase.us/services/data_import_export/download?id=some_shock_id&del=1&name=fake_test_object.SOME_FORMAT.zip&url=https%3A%2F%2Fci.kbase.us%2Fservices%2Fshock-api';
+            expect(iframe.src).toBe(expectedUrl);
+        });
+
+        it('Should create an app cell with the staging exporter', async () => {
+            /* use mock for Jupyter.narrative.addAndPopulateApp */
+            spyOn(Jupyter.narrative, 'addAndPopulateApp');
+            const exporterCache = {
+                lastUpdateTime: 100,
+                types: {
+                    [objType]: {
+                        export_functions: {
+                            STAGING: 'gets_overwritten_right_now',
+                        },
+                    },
+                },
+            };
+            await initDownloadPanel(null, exporterCache);
+            const exportBtns = $div.find('.kb-data-list-btn');
+            // expect 2 buttons - STAGING, JSON, in that order.
+            expect(exportBtns.length).toEqual(2);
+            exportBtns[0].click();
+            expect(Jupyter.narrative.addAndPopulateApp).toHaveBeenCalledOnceWith(
+                STAGING_EXPORT_APP,
+                'release',
+                { input_ref: 'fake_test_object' }
+            );
+        });
+
+        it('Should create an app cell with the JSON exporter', async () => {
+            /* use mock for Jupyter.narrative.addAndPopulateApp */
+            spyOn(Jupyter.narrative, 'addAndPopulateApp');
+            await initDownloadPanel(null, { lastUpdateTime: 100, types: { [objType]: {} } });
+            const exportBtn = $div.find('.kb-data-list-btn');
+            // only one is JSON
+            expect(exportBtn.length).toEqual(1);
+            exportBtn.click();
+            expect(Jupyter.narrative.addAndPopulateApp).toHaveBeenCalledOnceWith(
+                JSON_EXPORT_APP,
+                'release',
+                { input_ref: 'fake_test_object' }
+            );
+        });
     });
 });

From 0ab9e56168024f8a3ca2a4ec7de83d7071426349 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 1 Jul 2024 10:46:35 -0400
Subject: [PATCH 09/24] fix tests, update eslint, eslint.config.mjs

---
 eslint.config.mjs                             | 66 +++++++++++++++++++
 package-lock.json                             | 46 +++++++++----
 package.json                                  |  4 +-
 .../kbaseNarrativeDownloadPanel-spec.js       |  2 +-
 4 files changed, 104 insertions(+), 14 deletions(-)
 create mode 100644 eslint.config.mjs

diff --git a/eslint.config.mjs b/eslint.config.mjs
new file mode 100644
index 0000000000..f19e576aa6
--- /dev/null
+++ b/eslint.config.mjs
@@ -0,0 +1,66 @@
+import globals from "globals";
+import path from "node:path";
+import { fileURLToPath } from "node:url";
+import js from "@eslint/js";
+import { FlatCompat } from "@eslint/eslintrc";
+
+const __filename = fileURLToPath(import.meta.url);
+const __dirname = path.dirname(__filename);
+const compat = new FlatCompat({
+    baseDirectory: __dirname,
+    recommendedConfig: js.configs.recommended,
+    allConfig: js.configs.all
+});
+
+export default [{
+    ignores: [
+        "**/.git",
+        "**/.github",
+        "**/.husky",
+        "**/cover",
+        "**/docs",
+        "**/js-coverage",
+        "kbase-extension/static/ext_components",
+        "kbase-extension/static/ext_modules",
+        "kbase-extension/static/ext_packages",
+        "**/node_modules",
+        "**/python-coverage",
+        "**/venv",
+    ],
+}, ...compat.extends("eslint:recommended", "prettier"), {
+    languageOptions: {
+        globals: {
+            ...globals.amd,
+            ...globals.browser,
+            ...globals.node,
+            ...globals.jasmine,
+            ...globals.mocha,
+        },
+
+        ecmaVersion: 2018,
+    },
+
+    rules: {
+        strict: ["error", "function"],
+
+        "no-console": ["error", {
+            allow: ["warn", "error"],
+        }],
+
+        "require-await": ["error"],
+        "no-confusing-arrow": ["error"],
+        "no-const-assign": ["error"],
+        "no-duplicate-imports": ["error"],
+        "no-useless-computed-key": ["error"],
+        "no-useless-rename": ["error"],
+        "no-var": ["error"],
+        "prefer-arrow-callback": ["warn"],
+        "prefer-const": ["error"],
+        "prefer-rest-params": ["warn"],
+        "prefer-spread": ["warn"],
+
+        indent: ["error", 4, {
+            SwitchCase: 1,
+        }],
+    },
+}];
diff --git a/package-lock.json b/package-lock.json
index e46ea37374..49a3558383 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -51,7 +51,8 @@
             },
             "devDependencies": {
                 "@babel/traverse": "^7.24.7",
-                "@eslint/js": "^9.4.0",
+                "@eslint/eslintrc": "^3.1.0",
+                "@eslint/js": "^9.6.0",
                 "@lodder/grunt-postcss": "^3.1.1",
                 "@wdio/browserstack-service": "^8.38.2",
                 "@wdio/cli": "^8.38.2",
@@ -71,6 +72,7 @@
                 "eslint-config-prettier": "^9.1.0",
                 "expect-webdriverio": "^3.6.0",
                 "glob": "^10.4.1",
+                "globals": "^15.6.0",
                 "grunt": "^1.6.1",
                 "grunt-cli": "^1.4.3",
                 "grunt-contrib-concat": "^2.1.0",
@@ -424,6 +426,15 @@
                 "node": ">=6.9.0"
             }
         },
+        "node_modules/@babel/traverse/node_modules/globals": {
+            "version": "11.12.0",
+            "resolved": "https://registry.npmjs.org/globals/-/globals-11.12.0.tgz",
+            "integrity": "sha512-WOBp/EEGUiIsJSp7wcv/y6MO+lV9UoncWqxuFfm8eBwzWNgyfBd6Gz+IeKQ9jCmyhoH99g15M3T+QaVHFjizVA==",
+            "dev": true,
+            "engines": {
+                "node": ">=4"
+            }
+        },
         "node_modules/@babel/types": {
             "version": "7.24.7",
             "resolved": "https://registry.npmjs.org/@babel/types/-/types-7.24.7.tgz",
@@ -628,10 +639,10 @@
             }
         },
         "node_modules/@eslint/js": {
-            "version": "9.4.0",
-            "resolved": "https://registry.npmjs.org/@eslint/js/-/js-9.4.0.tgz",
-            "integrity": "sha512-fdI7VJjP3Rvc70lC4xkFXHB0fiPeojiL1PxVG6t1ZvXQrarj893PweuBTujxDUFk0Fxj4R7PIIAZ/aiiyZPZcg==",
-            "license": "MIT",
+            "version": "9.6.0",
+            "resolved": "https://registry.npmjs.org/@eslint/js/-/js-9.6.0.tgz",
+            "integrity": "sha512-D9B0/3vNg44ZeWbYMpBoXqNP4j6eQD5vNwIlGAuFRRzK/WtT/jvDQW3Bi9kkf3PMDMlM7Yi+73VLUsn5bJcl8A==",
+            "dev": true,
             "engines": {
                 "node": "^18.18.0 || ^20.9.0 || >=21.1.0"
             }
@@ -3432,9 +3443,9 @@
             }
         },
         "node_modules/caniuse-lite": {
-            "version": "1.0.30001636",
-            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001636.tgz",
-            "integrity": "sha512-bMg2vmr8XBsbL6Lr0UHXy/21m84FTxDLWn2FSqMd5PrlbMxwJlQnC2YWYxVgp66PZE+BBNF2jYQUBKCo1FDeZg==",
+            "version": "1.0.30001638",
+            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001638.tgz",
+            "integrity": "sha512-5SuJUJ7cZnhPpeLHaH0c/HPAnAHZvS6ElWyHK9GSIbVOQABLzowiI2pjmpvZ1WEbkyz46iFd4UXlOHR5SqgfMQ==",
             "dev": true,
             "funding": [
                 {
@@ -5759,6 +5770,14 @@
                 "url": "https://opencollective.com/eslint"
             }
         },
+        "node_modules/eslint/node_modules/@eslint/js": {
+            "version": "9.4.0",
+            "resolved": "https://registry.npmjs.org/@eslint/js/-/js-9.4.0.tgz",
+            "integrity": "sha512-fdI7VJjP3Rvc70lC4xkFXHB0fiPeojiL1PxVG6t1ZvXQrarj893PweuBTujxDUFk0Fxj4R7PIIAZ/aiiyZPZcg==",
+            "engines": {
+                "node": "^18.18.0 || ^20.9.0 || >=21.1.0"
+            }
+        },
         "node_modules/eslint/node_modules/ansi-styles": {
             "version": "4.3.0",
             "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
@@ -7307,12 +7326,15 @@
             }
         },
         "node_modules/globals": {
-            "version": "11.12.0",
-            "resolved": "https://registry.npmjs.org/globals/-/globals-11.12.0.tgz",
-            "integrity": "sha512-WOBp/EEGUiIsJSp7wcv/y6MO+lV9UoncWqxuFfm8eBwzWNgyfBd6Gz+IeKQ9jCmyhoH99g15M3T+QaVHFjizVA==",
+            "version": "15.6.0",
+            "resolved": "https://registry.npmjs.org/globals/-/globals-15.6.0.tgz",
+            "integrity": "sha512-UzcJi88Hw//CurUIRa9Jxb0vgOCcuD/MNjwmXp633cyaRKkCWACkoqHCtfZv43b1kqXGg/fpOa8bwgacCeXsVg==",
             "dev": true,
             "engines": {
-                "node": ">=4"
+                "node": ">=18"
+            },
+            "funding": {
+                "url": "https://github.com/sponsors/sindresorhus"
             }
         },
         "node_modules/globalthis": {
diff --git a/package.json b/package.json
index ea00719bd6..cfacb4f11c 100644
--- a/package.json
+++ b/package.json
@@ -9,7 +9,8 @@
     },
     "devDependencies": {
         "@babel/traverse": "^7.24.7",
-        "@eslint/js": "^9.4.0",
+        "@eslint/eslintrc": "^3.1.0",
+        "@eslint/js": "^9.6.0",
         "@lodder/grunt-postcss": "^3.1.1",
         "@wdio/browserstack-service": "^8.38.2",
         "@wdio/cli": "^8.38.2",
@@ -29,6 +30,7 @@
         "eslint-config-prettier": "^9.1.0",
         "expect-webdriverio": "^3.6.0",
         "glob": "^10.4.1",
+        "globals": "^15.6.0",
         "grunt": "^1.6.1",
         "grunt-cli": "^1.4.3",
         "grunt-contrib-concat": "^2.1.0",
diff --git a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
index 28397df322..95e8062def 100644
--- a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
+++ b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
@@ -9,7 +9,7 @@ define([
     const JSON_EXPORT_APP = 'kb_staging_exporter/export_json_to_staging';
     const STAGING_EXPORT_APP = 'kb_staging_exporter/export_to_staging';
 
-    fdescribe('The kbaseNarrativeDownloadPanel widget', () => {
+    describe('The kbaseNarrativeDownloadPanel widget', () => {
         let $div = null;
         const ws = 1111,
             oid = 2222,

From 52d606b68b5a92022def009dfffb9dfdab5ec930 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 1 Jul 2024 11:31:45 -0400
Subject: [PATCH 10/24] remove old eslintrc files

---
 .eslintrc.yml      | 46 ----------------------------------------------
 test/.eslintrc.yml |  5 -----
 2 files changed, 51 deletions(-)
 delete mode 100644 .eslintrc.yml
 delete mode 100644 test/.eslintrc.yml

diff --git a/.eslintrc.yml b/.eslintrc.yml
deleted file mode 100644
index 0262525143..0000000000
--- a/.eslintrc.yml
+++ /dev/null
@@ -1,46 +0,0 @@
-env:
-  amd: true
-  browser: true
-  es6: true
-  node: true
-extends:
-  - "eslint:recommended"
-  - prettier
-parserOptions:
-  ecmaVersion: 2018
-root: true
-rules:
-  strict:
-    - error
-    - function
-  no-console:
-    - error
-    - allow:
-        - warn
-        - error
-  require-await:
-    - error
-  no-confusing-arrow:
-    - error
-  no-const-assign:
-    - error
-  no-duplicate-imports:
-    - error
-  no-useless-computed-key:
-    - error
-  no-useless-rename:
-    - error
-  no-var:
-    - error
-  prefer-arrow-callback:
-    - warn
-  prefer-const:
-    - error
-  prefer-rest-params:
-    - warn
-  prefer-spread:
-    - warn
-  indent:
-    - error
-    - 4
-    - SwitchCase: 1
diff --git a/test/.eslintrc.yml b/test/.eslintrc.yml
deleted file mode 100644
index 57f8592f5c..0000000000
--- a/test/.eslintrc.yml
+++ /dev/null
@@ -1,5 +0,0 @@
-env:
-  amd: true
-  es6: true
-  jasmine: true
-  mocha: true

From 55e8ffb11ba80e265bfcab2d619cb9ba4914f701 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 1 Jul 2024 11:32:29 -0400
Subject: [PATCH 11/24] remove eslintignore

---
 .eslintignore | 12 ------------
 1 file changed, 12 deletions(-)
 delete mode 100644 .eslintignore

diff --git a/.eslintignore b/.eslintignore
deleted file mode 100644
index 9df0372c3a..0000000000
--- a/.eslintignore
+++ /dev/null
@@ -1,12 +0,0 @@
-.git
-.github
-.husky
-cover
-docs
-js-coverage
-kbase-extension/static/ext_components
-kbase-extension/static/ext_modules
-kbase-extension/static/ext_packages
-node_modules
-python-coverage
-venv

From 4fdfa9f7035931bb59500cf7fe21a048556adb77 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 1 Jul 2024 16:50:13 -0400
Subject: [PATCH 12/24] include tests for logs, others

---
 .../narrative_core/kbaseNarrativeDataList.js  |   4 +-
 .../kbaseNarrativeDownloadPanel.js            | 110 ++++-----
 package-lock.json                             |   6 +-
 .../kbaseNarrativeDownloadPanel-spec.js       | 211 ++++++++++++++++++
 4 files changed, 260 insertions(+), 71 deletions(-)

diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDataList.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDataList.js
index e7c7116f20..728b002497 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDataList.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDataList.js
@@ -53,8 +53,6 @@ define([
     kbaseDataCard,
     DataProvider
 ) => {
-    'use strict';
-
     return KBWidget({
         name: 'kbaseNarrativeDataList',
         parent: kbaseAuthenticatedWidget,
@@ -961,7 +959,7 @@ define([
                         token: this._attributes.auth.token,
                         type: type,
                         objId: objId,
-                        ref: objRef,
+                        upa: objRef,
                         objName: objData.objectInfo.name,
                         downloadSpecCache: this.downloadSpecCache,
                     });
diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index 3b55c5277c..7041999309 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -1,4 +1,3 @@
-/* eslint-disable no-console */
 /**
  * "Download" panel for each element in data list panel.
  * @author Roman Sutormin <rsutormin@lbl.gov>
@@ -25,7 +24,7 @@ define([
             token: null,
             type: null,
             objId: null,
-            ref: null,
+            upa: null,
             objName: null,
             downloadSpecCache: null, // {'lastUpdateTime': <millisec.>, 'types': {<type>: <spec>}}
         },
@@ -35,16 +34,15 @@ define([
         nmsURL: Config.url('narrative_method_store'),
         eeURL: Config.url('execution_engine2'),
         timer: null,
+        timeInterval: 5000,
 
         init: function (options) {
             this._super(options);
             Object.assign(this, options);
-            if (!this.objId) {
-                this.objId = this.ref.split(';').pop().trim().split('/')[1];
-            }
+            this.renderStructure();
             this.downloadSpecCache = options.downloadSpecCache;
             if (this.downloadSpecCache.lastUpdateTime) {
-                this.render();
+                this.renderDownloadButtons();
                 return this;
             } else {
                 // TODO: remove this, and fetch downloader info from NarrativeService, in a TBD function.
@@ -55,7 +53,7 @@ define([
                 )
                     .then((data) => {
                         this.updateDownloadSpecCache(data);
-                        this.render();
+                        this.renderDownloadButtons();
                     })
                     .catch((error) => this.showError(error))
                     .finally(() => this);
@@ -65,9 +63,6 @@ define([
         updateDownloadSpecCache: function (data) {
             const types = {};
             Object.keys(data[3]).forEach((key) => {
-                if (data[3][key].loading_error) {
-                    console.error(`Error loading type [${key}]: ${data[3][key].loading_error}`);
-                }
                 types[key] = data[3][key];
             });
             this.downloadSpecCache = {
@@ -85,30 +80,42 @@ define([
                     });
                 } else {
                     $dlBtn.parent().find('.kb-data-list-btn').prop('disabled', true);
-                    this.startDownloader(dlInfo).then(([jobId, wsObjectName]) => {
-                        this.waitForDownloadJob(jobId, wsObjectName);
-                    });
+                    this.startDownloader(dlInfo)
+                        .then(([jobId, wsObjectName]) => {
+                            this.waitForDownloadJob(jobId, wsObjectName);
+                        })
+                        .catch((error) => {
+                            this.showError(error);
+                        });
                 }
             });
             return $dlBtn;
         },
 
-        render: function () {
-            const downloadPanel = this.$elem;
-
-            // TODO: migrate to SCSS
-            const $labeltd = $('<td>')
-                .css({ 'white-space': 'nowrap', padding: '1px' })
+        renderStructure: function () {
+            const $container = $('<div>');
+            const $label = $('<div>')
+                .addClass('kb-download-label')
+                .css({ 'white-space': 'nowrap', padding: '1px', 'align-self': 'center' })
                 .append('Export as:');
-            const $btnTd = $('<td>').css({ padding: '1px' });
-            downloadPanel.append(
-                $('<table>').css({ width: '100%' }).append('<tr>').append($labeltd).append($btnTd)
-            );
+            const $buttons = $('<div>')
+                .addClass('kb-download-buttons')
+                .css({ padding: '1px', 'text-align': 'left' });
+            $container.css({ display: 'flex' }).append($label).append($buttons);
 
+            this.$elem.append($container);
+            this.$statusDiv = $('<div>')
+                .addClass('kb-download-status')
+                .css({ margin: '15px', 'word-wrap': 'wrap-word', overflow: 'none' });
+            this.$elem.append(this.$statusDiv.hide());
+        },
+
+        renderDownloadButtons: function () {
             const downloaders = this.prepareDownloaders(this.type);
+            const $btnPanel = this.$elem.find('.kb-download-buttons');
             downloaders.forEach((dlInfo) => {
                 if (dlInfo.name.toLocaleLowerCase() === 'staging') {
-                    $btnTd.append(
+                    $btnPanel.append(
                         this.makeDownloaderButton(
                             {
                                 name: 'STAGING',
@@ -118,10 +125,10 @@ define([
                         )
                     );
                 } else {
-                    $btnTd.append(this.makeDownloaderButton(dlInfo));
+                    $btnPanel.append(this.makeDownloaderButton(dlInfo));
                 }
             });
-            $btnTd.append(
+            $btnPanel.append(
                 this.makeDownloaderButton(
                     {
                         name: 'JSON',
@@ -131,20 +138,15 @@ define([
                 )
             );
 
-            $btnTd.append(
+            $btnPanel.append(
                 $('<button>')
                     .addClass('kb-data-list-cancel-btn')
                     .append('Cancel')
                     .click(() => {
                         this.stopTimer();
-                        downloadPanel.empty();
+                        this.$elem.empty();
                     })
             );
-
-            this.$statusDiv = $('<div>').css({ margin: '15px' });
-            this.$statusDivContent = $('<div>');
-            this.$statusDiv.append(this.$statusDivContent);
-            downloadPanel.append(this.$statusDiv.hide());
         },
 
         // TODO: move this to result of as-yet-unwritten NarrativeService call
@@ -161,13 +163,6 @@ define([
                 Object.keys(typeSpec['export_functions']).forEach((name) => {
                     ret.push({ name: name, appId: typeSpec['export_functions'][name] });
                 });
-            } else {
-                console.log(
-                    'Type [' +
-                        type +
-                        "] was skipped (no 'export_functions' block in " +
-                        'type-spec).'
-                );
             }
             return ret;
         },
@@ -187,22 +182,12 @@ define([
                 eeClient.sync_call('execution_engine2.run_job', [
                     {
                         method: method,
-                        params: [{ input_ref: this.ref }],
+                        params: [{ input_ref: this.upa }],
                         service_ver: tag,
                         app_id: method,
                     },
                 ])
-            )
-                .then(([jobId]) => {
-                    console.log(
-                        'Running ' + appInfo.appId + ' (tag="' + tag + '"), ' + 'job ID: ' + jobId
-                    );
-                    return [jobId, wsObjectName];
-                })
-                .catch((error) => {
-                    console.error(error);
-                    this.showError(error);
-                });
+            ).then(([jobId]) => [jobId, wsObjectName]);
         },
 
         waitForDownloadJob: function (jobId, wsObjectName) {
@@ -213,7 +198,6 @@ define([
                     eeClient.sync_call('execution_engine2.check_job', [{ job_id: jobId }])
                 )
                     .then(([jobState]) => {
-                        console.log('got job state', jobState);
                         if (!jobState.running) {
                             return [{}, []];
                         }
@@ -221,23 +205,22 @@ define([
                             eeClient.sync_call('execution_engine2.get_job_logs', [
                                 { job_id: jobId, skip_lines: skipLogLines },
                             ])
-                        ).then((logData) => [jobState, logData[0].lines]);
+                        ).then((logData) => {
+                            return [jobState, logData[0].lines];
+                        });
                     })
                     .then(([jobState, logLines]) => {
                         if (jobState.finished) {
                             this.stopTimer();
                             if (jobState.error) {
-                                console.error(jobState.error);
                                 this.showError(jobState.error.message);
                             } else {
-                                console.log('Export is complete');
                                 this.finishDownload(
                                     jobState.job_output.result[0].shock_id,
                                     wsObjectName
                                 );
                             }
                         } else if (logLines.length) {
-                            logLines.forEach((line) => console.log(line.line));
                             skipLogLines += logLines.length;
                             const line = logLines[logLines.length - 1].line;
                             const status = skipLogLines === 0 ? jobState.status : line;
@@ -248,17 +231,16 @@ define([
                     })
                     .catch((error) => {
                         this.stopTimer();
-                        console.log(error);
-                        this.showError(error.error.message);
+                        this.showError(error);
                     });
             };
 
-            this.timer = setInterval(timeLst, 5000);
+            this.timer = setInterval(timeLst, this.timeInterval);
             timeLst();
         },
 
         finishDownload: function (shockNode, wsObjectName) {
-            this.$statusDiv.hide();
+            this.$statusDiv.empty().hide();
             this.$elem.find('.kb-data-list-btn').prop('disabled', false);
             let elems = shockNode.split('/');
             if (elems.length > 1) {
@@ -268,7 +250,6 @@ define([
             if (elems.length > 0) {
                 shockNode = elems[0];
             }
-            console.log('Shock node ID: ' + shockNode);
             const name = encodeURIComponent(wsObjectName + '.zip');
             const urlSuffix = `/download?id=${shockNode}&del=1&name=${name}&url=${encodeURIComponent(this.shockURL)}`;
             this.downloadFile(urlSuffix);
@@ -276,7 +257,6 @@ define([
 
         downloadFile: function (urlSuffix) {
             const url = this.exportURL + urlSuffix;
-            console.log('Downloading url=' + url);
             const hiddenIFrameID = 'hiddenDownloader';
             let iframe = document.getElementById(hiddenIFrameID);
             if (iframe === null) {
@@ -289,7 +269,7 @@ define([
         },
 
         showMessage: function (msg) {
-            this.$statusDivContent.empty().append(msg);
+            this.$statusDiv.empty().append(msg);
         },
 
         showError: function (error) {
@@ -302,7 +282,7 @@ define([
             }
             // error is final state, so reactivate!
             this.$elem.find('.kb-data-list-btn').prop('disabled', false);
-            this.$statusDivContent.empty().append(
+            this.$statusDiv.empty().append(
                 $('<span>')
                     .css({ color: '#F44336' })
                     .append('Error: ' + error)
diff --git a/package-lock.json b/package-lock.json
index 49a3558383..2ea5ff6d33 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -3443,9 +3443,9 @@
             }
         },
         "node_modules/caniuse-lite": {
-            "version": "1.0.30001638",
-            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001638.tgz",
-            "integrity": "sha512-5SuJUJ7cZnhPpeLHaH0c/HPAnAHZvS6ElWyHK9GSIbVOQABLzowiI2pjmpvZ1WEbkyz46iFd4UXlOHR5SqgfMQ==",
+            "version": "1.0.30001639",
+            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001639.tgz",
+            "integrity": "sha512-eFHflNTBIlFwP2AIKaYuBQN/apnUoKNhBdza8ZnW/h2di4LCZ4xFqYlxUxo+LQ76KFI1PGcC1QDxMbxTZpSCAg==",
             "dev": true,
             "funding": [
                 {
diff --git a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
index 95e8062def..43e27a1529 100644
--- a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
+++ b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
@@ -114,6 +114,20 @@ define([
             expect($div.find('.kb-data-list-cancel-btn').html()).toContain('Cancel');
         });
 
+        it('Should show an error if NMS fails on start', async () => {
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('narrative_method_store'),
+                body: /list_categories/,
+                statusCode: 500,
+                response: 'an error happened',
+                isError: true,
+            });
+
+            await initDownloadPanel(null, {});
+            const $status = $div.find('.kb-download-status');
+            expect($status.text()).toContain('Error: an error happened');
+        });
+
         it('Should start a "hidden" download job when clicking an exporter', async () => {
             /* uses mocks
              *   ee2.run_job
@@ -194,6 +208,192 @@ define([
             expect(iframe.src).toBe(expectedUrl);
         });
 
+        it('Should show an error if the hidden download job fails to start', async () => {
+            const exportApp = 'exporter/export_as_some_format',
+                errorMsg = 'failed to start job',
+                exporterCache = {
+                    lastUpdateTime: 100,
+                    types: {
+                        [objType]: {
+                            export_functions: {
+                                SOME_FORMAT: exportApp,
+                            },
+                        },
+                    },
+                };
+            // set up mocks here
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /run_job/,
+                statusCode: 500,
+                response: errorMsg,
+                isError: true,
+            });
+
+            const widget = await initDownloadPanel(null, exporterCache);
+            const exportBtns = $div.find('.kb-data-list-btn');
+
+            await TestUtil.waitForElementState(
+                $div[0],
+                () => {
+                    const text = $div[0].querySelector('.kb-download-status').textContent || '';
+                    return text.endsWith(errorMsg);
+                },
+                () => {
+                    exportBtns[0].click();
+                }
+            );
+            expect($div[0].querySelector('.kb-download-status').textContent).toContain(errorMsg);
+            expect(widget.timer).toBeNull();
+        });
+
+        it('Should show running logs during a download job', async () => {
+            const fakeJobId = 'dl_job_123456',
+                exportApp = 'exporter/export_as_some_format',
+                exporterCache = {
+                    lastUpdateTime: 100,
+                    types: {
+                        [objType]: {
+                            export_functions: {
+                                SOME_FORMAT: exportApp,
+                            },
+                        },
+                    },
+                },
+                jobStates = [
+                    [{ running: 12345 }],
+                    [
+                        {
+                            running: 12345,
+                            finished: 11111,
+                            status: 'completed',
+                            job_output: {
+                                result: [
+                                    {
+                                        shock_id: 'foobar',
+                                    },
+                                ],
+                            },
+                        },
+                    ],
+                ];
+
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /run_job/,
+                response: [fakeJobId],
+            });
+
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /get_job_logs/,
+                response: {
+                    count: 1,
+                    last_line_number: 1,
+                    lines: [
+                        {
+                            line: 'some log',
+                            isError: 0,
+                        },
+                    ],
+                },
+            });
+
+            // we're running a couple times so things complete, and the mocks aren't set
+            // up for that, so just call jasmine.Ajax directly
+            jasmine.Ajax.stubRequest(Config.url('execution_engine2'), /check_job/).andCallFunction(
+                (request) => {
+                    const response = {
+                        version: '1.1',
+                        id: '12345',
+                        result: jobStates.shift(),
+                    };
+                    request.respondWith({
+                        status: 200,
+                        statusText: 'HTTP/1.1 200 OK',
+                        contentType: 'application/json',
+                        responseText: JSON.stringify(response),
+                    });
+                }
+            );
+
+            const widget = await initDownloadPanel(null, exporterCache);
+            const exportBtns = $div.find('.kb-data-list-btn');
+
+            await TestUtil.waitForElementState(
+                $div[0],
+                () => {
+                    const text = $div[0].querySelector('.kb-download-status').textContent || '';
+                    return text.endsWith('some log');
+                },
+                () => {
+                    exportBtns[0].click();
+                }
+            );
+            expect($div[0].querySelector('.kb-download-status').textContent).toContain('some log');
+            expect(widget.timer).not.toBeNull();
+
+            await TestUtil.waitForElementState($div[0], () => {
+                const text = $div[0].querySelector('.kb-download-status').textContent;
+                return text === '';
+            });
+
+            expect($div[0].querySelector('.kb-download-status').textContent).toBe('');
+            expect(widget.timer).toBeNull();
+        });
+
+        it('Should show an error if one happens while trying to get the job state', async () => {
+            /* uses mocks
+             *   ee2.run_job
+             *   ee2.check_job
+             *   ee2.job_logs
+             *   DataImportExport url
+             */
+            const fakeJobId = 'dl_job_123',
+                exportApp = 'exporter/export_as_some_format',
+                exporterCache = {
+                    lastUpdateTime: 100,
+                    types: {
+                        [objType]: {
+                            export_functions: {
+                                SOME_FORMAT: exportApp,
+                            },
+                        },
+                    },
+                },
+                errorMsg = 'error while checking job state';
+            // set up mocks here
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /run_job/,
+                response: [fakeJobId],
+            });
+            // instant finish to the job!
+            Mocks.mockJsonRpc1Call({
+                url: Config.url('execution_engine2'),
+                body: /check_job/,
+                response: errorMsg,
+                isError: true,
+                statusCode: 500,
+            });
+
+            const widget = await initDownloadPanel(null, exporterCache);
+            const exportBtns = $div.find('.kb-data-list-btn');
+
+            await TestUtil.waitForElementState(
+                $div[0],
+                () => {
+                    const text = $div[0].querySelector('.kb-download-status').textContent || '';
+                    return text.endsWith(errorMsg);
+                },
+                () => {
+                    exportBtns[0].click();
+                }
+            );
+            expect($div[0].querySelector('.kb-download-status').textContent).toContain(errorMsg);
+            expect(widget.timer).toBeNull();
+        });
+
         it('Should create an app cell with the staging exporter', async () => {
             /* use mock for Jupyter.narrative.addAndPopulateApp */
             spyOn(Jupyter.narrative, 'addAndPopulateApp');
@@ -233,5 +433,16 @@ define([
                 { input_ref: 'fake_test_object' }
             );
         });
+
+        it('Should have a cancel button that empties the widget', async () => {
+            const widget = await initDownloadPanel(null, {
+                lastUpdateTime: 100,
+                types: { [objType]: {} },
+            });
+            const cancelBtn = $div.find('.kb-data-list-cancel-btn');
+            cancelBtn.click();
+            expect($div.children().length).toBe(0);
+            expect(widget.timer).toBeNull();
+        });
     });
 });

From 9f70170b2dd2762083f724b9637c0dfdb1a57821 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 1 Jul 2024 23:09:25 -0400
Subject: [PATCH 13/24] add comments on complex parsing

---
 .../narrative_core/kbaseNarrativeDownloadPanel.js    | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index 3b55c5277c..1cb986ebb3 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -40,6 +40,12 @@ define([
             this._super(options);
             Object.assign(this, options);
             if (!this.objId) {
+                // we need the actual object id, so if we get an upa path (or just an upa),
+                // extract the object id from that.
+                // '1/2/3;4/5/6;7/8/9' would break down to:
+                // ['1/2/3', '4/5/6', '7/8/9']
+                // pop + trim -> '7/8/9'
+                // split on '/' and take the second element = the object id.
                 this.objId = this.ref.split(';').pop().trim().split('/')[1];
             }
             this.downloadSpecCache = options.downloadSpecCache;
@@ -260,6 +266,12 @@ define([
         finishDownload: function (shockNode, wsObjectName) {
             this.$statusDiv.hide();
             this.$elem.find('.kb-data-list-btn').prop('disabled', false);
+            // once upon a time, there were versions where shockNode ids, or other results
+            // from the download run, could result in URL formats like:
+            // https://some_shock_url/path/to/shock/some_shock_id?param=1&param=2
+            // where "some_shock_id" is really what we care about. This extracts
+            // that id out of those URLs.
+            // This is slated for demolition in the move to the blobstore.
             let elems = shockNode.split('/');
             if (elems.length > 1) {
                 shockNode = elems[elems.length - 1];

From 8fb1ac189056b72894933baf78503e1f5a1cdf0b Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 8 Jul 2024 12:37:00 -0400
Subject: [PATCH 14/24] convert DIE download URL to Blobstore

---
 .../kbaseNarrativeDownloadPanel.js            | 31 +++++++------------
 src/config.json                               |  7 +++++
 src/config.json.templ                         |  7 +++++
 .../kbaseNarrativeDownloadPanel-spec.js       |  4 +--
 4 files changed, 27 insertions(+), 22 deletions(-)

diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index 048563b941..0d01008f57 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -29,9 +29,6 @@ define([
             downloadSpecCache: null, // {'lastUpdateTime': <millisec.>, 'types': {<type>: <spec>}}
         },
         loadingImage: Config.get('loading_gif'),
-        shockURL: Config.url('shock'),
-        exportURL: Config.url('data_import_export'),
-        nmsURL: Config.url('narrative_method_store'),
         eeURL: Config.url('execution_engine2'),
         timer: null,
         timeInterval: 5000,
@@ -47,7 +44,9 @@ define([
             } else {
                 // TODO: remove this, and fetch downloader info from NarrativeService, in a TBD function.
                 // eslint-disable-next-line no-undef
-                const nms = new NarrativeMethodStore(this.nmsURL, { token: this.token });
+                const nms = new NarrativeMethodStore(Config.url('narrative_method_store'), {
+                    token: this.token,
+                });
                 return Promise.resolve(
                     nms.list_categories({ load_methods: 0, load_apps: 0, load_types: 1 })
                 )
@@ -172,8 +171,6 @@ define([
                 '<img src="' + this.loadingImage + '" /> Export status: Preparing data'
             );
             this.$statusDiv.show();
-            const wsObjectName =
-                this.objName + '.' + appInfo.name.replace(/[^a-zA-Z0-9|.\-_]/g, '_');
             const tag = APIUtil.getAppVersionTag();
             const method = appInfo.appId.replace('/', '.');
             const eeClient = new GenericClient(this.eeURL, { token: this.token }, null, false);
@@ -187,10 +184,10 @@ define([
                         app_id: method,
                     },
                 ])
-            ).then(([jobId]) => [jobId, wsObjectName]);
+            ).then(([jobId]) => [jobId]);
         },
 
-        waitForDownloadJob: function (jobId, wsObjectName) {
+        waitForDownloadJob: function (jobId) {
             const eeClient = new GenericClient(this.eeURL, { token: this.token }, null, false);
             let skipLogLines = 0;
             const timeLst = () => {
@@ -215,10 +212,7 @@ define([
                             if (jobState.error) {
                                 this.showError(jobState.error.message);
                             } else {
-                                this.finishDownload(
-                                    jobState.job_output.result[0].shock_id,
-                                    wsObjectName
-                                );
+                                this.finishDownload(jobState.job_output.result[0].shock_id);
                             }
                         } else if (logLines.length) {
                             skipLogLines += logLines.length;
@@ -239,7 +233,7 @@ define([
             timeLst();
         },
 
-        finishDownload: function (shockNode, wsObjectName) {
+        finishDownload: function (shockNode) {
             this.$statusDiv.empty().hide();
             this.$elem.find('.kb-data-list-btn').prop('disabled', false);
             // once upon a time, there were versions where shockNode ids, or other results
@@ -247,7 +241,6 @@ define([
             // https://some_shock_url/path/to/shock/some_shock_id?param=1&param=2
             // where "some_shock_id" is really what we care about. This extracts
             // that id out of those URLs.
-            // This is slated for demolition in the move to the blobstore.
             let elems = shockNode.split('/');
             if (elems.length > 1) {
                 shockNode = elems[elems.length - 1];
@@ -256,13 +249,11 @@ define([
             if (elems.length > 0) {
                 shockNode = elems[0];
             }
-            const name = encodeURIComponent(wsObjectName + '.zip');
-            const urlSuffix = `/download?id=${shockNode}&del=1&name=${name}&url=${encodeURIComponent(this.shockURL)}`;
-            this.downloadFile(urlSuffix);
+            const downloadUrl = `${Config.url('blobstore')}/node/${shockNode}?download&del`;
+            this.downloadFile(downloadUrl);
         },
 
-        downloadFile: function (urlSuffix) {
-            const url = this.exportURL + urlSuffix;
+        downloadFile: function (downloadUrl) {
             const hiddenIFrameID = 'hiddenDownloader';
             let iframe = document.getElementById(hiddenIFrameID);
             if (iframe === null) {
@@ -271,7 +262,7 @@ define([
                 iframe.style.display = 'none';
                 document.body.appendChild(iframe);
             }
-            iframe.src = url;
+            iframe.src = downloadUrl;
         },
 
         showMessage: function (msg) {
diff --git a/src/config.json b/src/config.json
index 92fdcf4882..55e10da422 100644
--- a/src/config.json
+++ b/src/config.json
@@ -2,6 +2,7 @@
     "appdev": {
         "auth": "https://appdev.kbase.us/services/auth",
         "awe": "https://appdev.kbase.us/services/awe-api",
+        "blobstore": "https://appdev.kbase.us/services/blobstore",
         "catalog": "https://appdev.kbase.us/services/catalog",
         "cdn": "https://appdev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -55,6 +56,7 @@
     "ci": {
         "auth": "https://ci.kbase.us/services/auth",
         "awe": "https://ci.kbase.us/services/awe-api",
+        "blobstore": "https://ci.kbase.us/services/blobstore",
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -120,6 +122,7 @@
     "dev": {
         "auth": "https://ci.kbase.us/services/auth",
         "awe": "https://ci.kbase.us/services/awe-api",
+        "blobstore": "https://ci.kbase.us/services/blobstore",
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -175,6 +178,7 @@
     "next": {
         "auth": "https://next.kbase.us/services/auth",
         "awe": "https://next.kbase.us/services/awe-api",
+        "blobstore": "https://next.kbase.us/services/blobstore",
         "catalog": "https://next.kbase.us/services/catalog",
         "cdn": "https://next.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -226,6 +230,7 @@
     "prod": {
         "auth": "https://kbase.us/services/auth",
         "awe": "https://kbase.us/services/awe-api",
+        "blobstore": "https://kbase.us/services/blobstore",
         "catalog": "https://kbase.us/services/catalog",
         "cdn": "https://kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -279,6 +284,7 @@
     "narrative-dev": {
         "auth": "https://narrative-dev.kbase.us/services/auth",
         "awe": "https://narrative-dev.kbase.us/services/awe-api",
+        "blobstore": "https://narrative-dev.kbase.us/services/blobstore",
         "catalog": "https://narrative-dev.kbase.us/services/catalog",
         "cdn": "https://narrative-dev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -331,6 +337,7 @@
     "narrative-refactor": {
         "auth": "https://narrative-refactor.kbase.us/services/auth",
         "awe": "https://narrative-refactor.kbase.us/services/awe-api",
+        "blobstore": "https://narrative-refactor.kbase.us/services/blobstore",
         "catalog": "https://narrative-refactor.kbase.us/services/catalog",
         "cdn": "https://narrative-refactor.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
diff --git a/src/config.json.templ b/src/config.json.templ
index b9d8f3172b..99d0017e29 100644
--- a/src/config.json.templ
+++ b/src/config.json.templ
@@ -2,6 +2,7 @@
     "appdev": {
         "auth": "https://appdev.kbase.us/services/auth",
         "awe": "https://appdev.kbase.us/services/awe-api",
+        "blobstore": "https://appdev.kbase.us/services/blobstore",
         "catalog": "https://appdev.kbase.us/services/catalog",
         "cdn": "https://appdev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -55,6 +56,7 @@
     "ci": {
         "auth": "https://ci.kbase.us/services/auth",
         "awe": "https://ci.kbase.us/services/awe-api",
+        "blobstore": "https://ci.kbase.us/services/blobstore",
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -120,6 +122,7 @@
     "dev": {
         "auth": "https://ci.kbase.us/services/auth",
         "awe": "https://ci.kbase.us/services/awe-api",
+        "blobstore": "https://ci.kbase.us/services/blobstore",
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -175,6 +178,7 @@
     "next": {
         "auth": "https://next.kbase.us/services/auth",
         "awe": "https://next.kbase.us/services/awe-api",
+        "blobstore": "https://next.kbase.us/services/blobstore",
         "catalog": "https://next.kbase.us/services/catalog",
         "cdn": "https://next.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -226,6 +230,7 @@
     "prod": {
         "auth": "https://kbase.us/services/auth",
         "awe": "https://kbase.us/services/awe-api",
+        "blobstore": "https://kbase.us/services/blobstore",
         "catalog": "https://kbase.us/services/catalog",
         "cdn": "https://kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -279,6 +284,7 @@
     "narrative-dev": {
         "auth": "https://narrative-dev.kbase.us/services/auth",
         "awe": "https://narrative-dev.kbase.us/services/awe-api",
+        "blobstore": "https://narrative-dev.kbase.us/services/blobstore",
         "catalog": "https://narrative-dev.kbase.us/services/catalog",
         "cdn": "https://narrative-dev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
@@ -331,6 +337,7 @@
     "narrative-refactor": {
         "auth": "https://narrative-refactor.kbase.us/services/auth",
         "awe": "https://narrative-refactor.kbase.us/services/awe-api",
+        "blobstore": "https://narrative-refactor.kbase.us/services/blobstore",
         "catalog": "https://narrative-refactor.kbase.us/services/catalog",
         "cdn": "https://narrative-refactor.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
diff --git a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
index 43e27a1529..cc97690f65 100644
--- a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
+++ b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
@@ -186,7 +186,7 @@ define([
                 },
             });
 
-            const dlUrlRegex = new RegExp(Config.url('data_import_export'));
+            const dlUrlRegex = new RegExp(Config.url('blobstore'));
             jasmine.Ajax.stubRequest(dlUrlRegex);
 
             await initDownloadPanel(null, exporterCache);
@@ -204,7 +204,7 @@ define([
             const iframe = document.getElementById('hiddenDownloader');
             expect(iframe).not.toBeNull();
             const expectedUrl =
-                'https://ci.kbase.us/services/data_import_export/download?id=some_shock_id&del=1&name=fake_test_object.SOME_FORMAT.zip&url=https%3A%2F%2Fci.kbase.us%2Fservices%2Fshock-api';
+                'https://ci.kbase.us/services/blobstore/node/some_shock_id?download&del';
             expect(iframe.src).toBe(expectedUrl);
         });
 

From 6e5cb32d61467475f47da74ad384360842332773 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Tue, 9 Jul 2024 12:02:42 -0400
Subject: [PATCH 15/24] fix printed warning when running an app with a wildcard
 allowed type

---
 package-lock.json                             |   6 +-
 src/biokbase/narrative/app_util.py            | 168 +++++++++++-------
 src/biokbase/narrative/tests/test_app_util.py |   5 +
 .../narrative/tests/test_appmanager.py        |  16 ++
 4 files changed, 126 insertions(+), 69 deletions(-)

diff --git a/package-lock.json b/package-lock.json
index 2ea5ff6d33..7fb28a66db 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -3443,9 +3443,9 @@
             }
         },
         "node_modules/caniuse-lite": {
-            "version": "1.0.30001639",
-            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001639.tgz",
-            "integrity": "sha512-eFHflNTBIlFwP2AIKaYuBQN/apnUoKNhBdza8ZnW/h2di4LCZ4xFqYlxUxo+LQ76KFI1PGcC1QDxMbxTZpSCAg==",
+            "version": "1.0.30001640",
+            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001640.tgz",
+            "integrity": "sha512-lA4VMpW0PSUrFnkmVuEKBUovSWKhj7puyCg8StBChgu298N1AtuF1sKWEvfDuimSEDbhlb/KqPKC3fs1HbuQUA==",
             "dev": true,
             "funding": [
                 {
diff --git a/src/biokbase/narrative/app_util.py b/src/biokbase/narrative/app_util.py
index 8970d864ff..c263a9aa10 100644
--- a/src/biokbase/narrative/app_util.py
+++ b/src/biokbase/narrative/app_util.py
@@ -14,10 +14,11 @@
 app_version_tags = ["release", "beta", "dev"]
 
 
-def check_tag(tag, raise_exception: bool = False):
+def check_tag(tag: str, *, raise_exception: bool = False) -> bool:
     """Checks if the given tag is one of "release", "beta", or "dev".
+
     Returns a boolean.
-    if raise_exception == True and the tag is bad, raises a ValueError
+    if raise_exception == True and the tag is bad, raises a ValueError.
     """
     tag_exists = tag in app_version_tags
     if not tag_exists and raise_exception:
@@ -26,8 +27,9 @@ def check_tag(tag, raise_exception: bool = False):
     return tag_exists
 
 
-def map_inputs_from_job(job_inputs, app_spec):
+def map_inputs_from_job(job_inputs: list[Any], app_spec: dict[str, Any]) -> dict[str, Any]:
     """Unmaps the actual list of job inputs back to the parameters specified by app_spec.
+
     For example, the inputs given to a method might be a list like this:
     ['input1', {'ws': 'my_workspace', 'foo': 'bar'}]
     and the input mapping looks like:
@@ -84,7 +86,12 @@ def map_inputs_from_job(job_inputs, app_spec):
     return input_dict
 
 
-def _untransform(transform_type, value):
+def _untransform(transform_type: str, value):  # noqa: ANN001 , ANN202
+    """If the value is a string and we have a reference (not UPA) transform type, untransform it.
+
+    This turns it back into either the object name or id.
+    Note that value can be Any and this can return Any, which ruffles ruff.
+    """
     if transform_type in ["ref", "putative-ref", "unresolved-ref"] and isinstance(value, str):
         # shear off everything before the first '/' - there should just be one.
         slash = value.find("/")
@@ -94,11 +101,10 @@ def _untransform(transform_type, value):
     return value
 
 
-def app_param(p):
-    """TODO: create an AppParam class to hold and validate this
-    TODO: create a Spec class to hold, validate, and process App Specs
-    Converts a param dictionary from a NarrativeMethodStore param spec into this structure with
-    a number of optional keys:
+def app_param(p: dict[str, Any]) -> dict[str, Any]:  # noqa: C901, PLR0912
+    """Converts a param dictionary from a NarrativeMethodStore param spec.
+
+    Creates the following structure with optional keys:
     {
         "id": string
         "is_group": boolean
@@ -118,7 +124,9 @@ def app_param(p):
         "min_val": either the "min_float" or "min_int" field, if present
         "max_val": either the "max_float" or "max_int" field, if present
         "regex_constraint": string
-    }
+    }.
+    TODO: create an AppParam class to hold and validate this.
+    TODO: create a Spec class to hold, validate, and process App Specs
     """
     p_info = {"id": p["id"], "is_group": False}
 
@@ -149,7 +157,7 @@ def app_param(p):
     else:
         p_info["default"] = defaults[0] if len(defaults) > 0 else None
 
-    if "checkbox_options" in p and len(p["checkbox_options"].keys()) == 2:
+    if "checkbox_options" in p and len(p["checkbox_options"].keys()) == 2:  # noqa: PLR2004
         p_info["checkbox_map"] = [
             p["checkbox_options"]["checked_value"],
             p["checkbox_options"]["unchecked_value"],
@@ -176,22 +184,25 @@ def app_param(p):
     return p_info
 
 
-def map_outputs_from_state(state, params, app_spec):
+def map_outputs_from_state(
+    state: dict[str, Any], params: dict[str, Any], app_spec: dict[str, Any]
+) -> tuple[str, dict[str, Any]]:  # noqa: C901
     """Returns the dict of output values from a completed app.
+
     Also returns the output widget.
     """
     if "behavior" not in app_spec:
-        raise ValueError("Invalid app spec - unable to map outputs")
+        err_str = "Invalid app spec - unable to map outputs"
+        raise ValueError(err_str)
     widget_params = {}
     out_mapping_key = "kb_service_output_mapping"
     if out_mapping_key not in app_spec["behavior"]:
         # for viewers or short-running things, but the inner keys are the same.
         out_mapping_key = "output_mapping"
 
-    spec_params = dict(
-        (app_spec_param["id"], app_param(app_spec_param))
-        for app_spec_param in app_spec["parameters"]
-    )
+    spec_params = {
+        app_spec_param["id"]: app_param(app_spec_param) for app_spec_param in app_spec["parameters"]
+    }
 
     for out_param in app_spec["behavior"].get(out_mapping_key, []):
         value = None
@@ -202,7 +213,7 @@ def map_outputs_from_state(state, params, app_spec):
             value = out_param["constant_value"]
         elif "input_parameter" in out_param:
             input_param_id = out_param["input_parameter"]
-            value = params.get(input_param_id, None)
+            value = params.get(input_param_id)
         elif "service_method_output_path" in out_param:
             value = get_result_sub_path(
                 state["job_output"]["result"], out_param["service_method_output_path"]
@@ -213,7 +224,7 @@ def map_outputs_from_state(state, params, app_spec):
             spec_param = spec_params.get(input_param_id)
         value = transform_param_value(out_param.get("target_type_transform"), value, spec_param)
 
-        p_id = out_param.get("target_property", None)
+        p_id = out_param.get("target_property")
         if p_id is not None:
             widget_params[p_id] = value
         else:
@@ -227,14 +238,15 @@ def map_outputs_from_state(state, params, app_spec):
     return (output_widget, widget_params)
 
 
-def get_result_sub_path(result, path):
+def get_result_sub_path(result, path: list[str]):  # noqa: ANN201, ANN001
     """Peels the right value out of the result with the given path.
+
+    Inputs and results are complicated, hence the poor typing. See below
+    TODO: rewrite to, well, make more sense.
     result - list
         This is a list of objects - each object is either a singleton, list, or object.
     path - list
         This is a list of strings
-    pos - int
-        This is the position in path that we're looking at right now.
 
     A typical run looks like this:
     result = [{'report': 'asdf', 'report_ref': 'xyz'}]
@@ -278,35 +290,37 @@ def get_result_sub_path(result, path):
         elem = int(path_head)
         if elem >= len(result):
             return None
-        else:
-            return get_result_sub_path(result[elem], path_tail)
+        return get_result_sub_path(result[elem], path_tail)
     return get_result_sub_path(result.get(path_head), path_tail)
 
 
-def extract_ws_refs(app_id, tag, spec_params, params):
-    """Returns a list of workspace refs (xxx/yyy/zzz) from the given parameters,
-    if they are actual workspace objects.
-    """
+def extract_ws_refs(
+    app_id: str, tag: str, spec_params: list[dict[str, Any]], params: dict[str, Any]
+) -> list[str]:  # noqa: ARG001
+    """Returns a list of UPAs from the given parameters if they are actual workspace objects."""
     # Cheater way for making a dict of params with param[id] => param
-    params_dict = dict((spec_params[i]["id"], spec_params[i]) for i in range(len(spec_params)))
+    params_dict = {spec_params[i]["id"]: spec_params[i] for i in range(len(spec_params))}
     workspace = system_variable("workspace")
     ws_input_refs = []
     for p in spec_params:
         if p["id"] in params:
-            (wsref, err) = check_parameter(p, params[p["id"]], workspace, all_params=params_dict)
+            (wsref, _) = check_parameter(p, params[p["id"]], workspace, all_params=params_dict)
             if wsref is not None:
                 if isinstance(wsref, list):
                     for ref in wsref:
                         if ref is not None:
-                            ws_input_refs.append(ref)
+                            ws_input_refs.append(ref)  # noqa: PERF401 too complex for a list comp.
                 else:
                     ws_input_refs.append(wsref)
     return ws_input_refs
 
 
-def validate_parameters(app_id, tag, spec_params, params):
-    """Validates the dict of params against the spec_params. If all is good,
-    it updates a few parameters that need it - checkboxes go from
+def validate_parameters(
+    app_id: str, tag: str, spec_params: list[dict[str, Any]], params: dict[str, Any]
+) -> tuple[dict[str, Any], list[str]]:  # noqa: C901, PLR0912
+    """Validates the dict of params against the spec_params.
+
+    If all is good, it updates a few parameters that need it - checkboxes go from
     True/False to 1/0, and sets default values where necessary.
     Then it returns a tuple like this:
     (dict_of_params, list_of_ws_refs)
@@ -320,7 +334,7 @@ def validate_parameters(app_id, tag, spec_params, params):
     spec_param_ids = [p["id"] for p in spec_params]
 
     # Cheater way for making a dict of params with param[id] => param
-    params_dict = dict((spec_params[i]["id"], spec_params[i]) for i in range(len(spec_params)))
+    params_dict = {spec_params[i]["id"]: spec_params[i] for i in range(len(spec_params))}
 
     # First, test for presence.
     missing_params = [
@@ -390,8 +404,11 @@ def validate_parameters(app_id, tag, spec_params, params):
     return (params, ws_input_refs)
 
 
-def check_parameter(param, value, workspace, all_params: dict[str, Any] | None = None):
+def check_parameter(
+    param: dict[str, Any], value, workspace: str, all_params: dict[str, Any] | None = None
+) -> str | None:  # noqa: ANN001
     """Checks if the given value matches the rules provided in the param dict.
+
     If yes, returns None
     If no, returns a String with an error.
 
@@ -437,7 +454,10 @@ def check_parameter(param, value, workspace, all_params: dict[str, Any] | None =
     return validate_param_value(param, value, workspace)
 
 
-def validate_group_values(param, value, workspace, spec_params):
+def validate_group_values(
+    param: dict[str, Any], value: dict[str, Any], workspace: str, spec_params: list[dict[str, Any]]
+) -> tuple[list[str], list[str]]:
+    """Validates group parameter values and returns the references or errors."""
     ref = []
     err = []
 
@@ -461,9 +481,13 @@ def validate_group_values(param, value, workspace, spec_params):
     return (ref, err)
 
 
-def validate_param_value(param, value, workspace):
-    """Tests a value to make sure it's valid, based on the rules given in the
-    param dict. Returns None if valid, an error string if not.
+def validate_param_value(param: dict[str, Any], value, workspace: str) -> tuple[str, str | None]:  # noqa: ANN001, C901, PLR0911, PLR0912
+    """Tests a value to make sure it's valid, based on the rules given in the param dict.
+
+    Returns a tuple with the value transformed to a workspace reference (if applicable, or None),
+    and either and error string or None if valid.
+
+    TODO: Wow this is too complex. Rewrite someday.
 
     Parameters:
     -----------
@@ -539,13 +563,13 @@ def validate_param_value(param, value, workspace):
             if "/" in value:
                 path_items = [item.strip() for item in value.split(";")]
                 for path_item in path_items:
-                    if len(path_item.split("/")) > 3:
+                    if len(path_item.split("/")) > 3:  # noqa: PLR2004
                         return (
                             ws_ref,
                             (
                                 f"Data reference named {value} does not "
-                                + "have the right format - should be "
-                                + "workspace/object/version(optional)"
+                                "have the right format - should be "
+                                "workspace/object/version(optional)"
                             ),
                         )
                 info = clients.get("workspace").get_object_info_new({"objects": [{"ref": value}]})[
@@ -561,13 +585,13 @@ def validate_param_value(param, value, workspace):
                 ws_ref = f"{info[6]}/{info[0]}/{info[4]}"
             type_ok = False
             for t in param["allowed_types"]:
-                if re.match(t, info[2]):
+                if t == "*" or re.match(t, info[2]):
                     type_ok = True
             if not type_ok:
                 msg = f"Type of data object, {info[2]}, does not match allowed types"
                 return (ws_ref, msg)
-        except Exception as e:
-            print(e)
+        except Exception as e:  # noqa: BLE001
+            print(e)  # noqa: T201  this error might be useful to get printed out for the user.
             msg = f"Data object named {value} not found with this Narrative."
             return (ws_ref, msg)
 
@@ -586,7 +610,7 @@ def validate_param_value(param, value, workspace):
                     ws_ref,
                     f"Given value {value} should be <= {param['max_val']}",
                 )
-        except BaseException:
+        except TypeError:
             return (ws_ref, f"Given value {value} must be a number")
 
     if "min_val" in param:
@@ -596,7 +620,7 @@ def validate_param_value(param, value, workspace):
                     ws_ref,
                     f"Given value {value} should be >= {param['min_val']}",
                 )
-        except BaseException:
+        except TypeError:
             return (ws_ref, f"Given value {value} must be a number")
 
     # if it's an output object, make sure it follows the data object rules.
@@ -613,7 +637,7 @@ def validate_param_value(param, value, workspace):
     # in python and vice versa
     # if 'regex_constraint' in param:
     #     for regex in param['regex_constraint']:
-    #         regex_string = regex.get('regex')
+    #         regex_string = regex.get('regex')  # noqa: ERA001
     #         if not re.match(regex_string, value):
     #             return (ws_ref,
     #                     'Value {} does not match required regex {}'.format(
@@ -623,15 +647,21 @@ def validate_param_value(param, value, workspace):
     return (ws_ref, None)
 
 
-def resolve_single_ref(workspace, value):
+def resolve_single_ref(workspace: str, value: str) -> str:
+    """Resolves a reference to an UPA, if it isn't one already.
+
+    This contacts the workspace (by the workspace name) and returns an UPA form
+    of the input value if it's not already in a reference format.
+    """
     ret = None
     if "/" in value:
         path_items = [item.strip() for item in value.split(";")]
         for path_item in path_items:
-            if len(path_item.split("/")) > 3:
-                raise ValueError(
+            if len(path_item.split("/")) > 3:  # noqa: PLR2004
+                err_str = (
                     f"Object reference {value} has too many slashes - should be ws/object/version"
                 )
+                raise ValueError(err_str)
         info = clients.get("workspace").get_object_info_new({"objects": [{"ref": value}]})[0]
         path_items[len(path_items) - 1] = f"{info[6]}/{info[0]}/{info[4]}"
         ret = ";".join(path_items)
@@ -644,15 +674,17 @@ def resolve_single_ref(workspace, value):
     return ret
 
 
-def resolve_ref(workspace, value):
+def resolve_ref(workspace: str, value: str | list[str]) -> str | list[str]:
+    """Resolves a reference to ensure it's an UPA."""
     if isinstance(value, list):
         return [resolve_single_ref(workspace, v) for v in value]
-    else:
-        return resolve_single_ref(workspace, value)
+    return resolve_single_ref(workspace, value)
+
 
+def resolve_ref_if_typed(value: str, spec_param: dict[str, Any]) -> str:
+    """If the parameter expects a typed object input, resolve the reference.
 
-def resolve_ref_if_typed(value, spec_param):
-    """For a given value and associated spec, if this is not an output param,
+    For a given value and associated spec, if this is not an output param,
     then ensure that the reference points to an object in the current
     workspace, and transform the value into an absolute reference to it.
     """
@@ -665,11 +697,13 @@ def resolve_ref_if_typed(value, spec_param):
     return value
 
 
-def transform_param_value(
-    transform_type: str | None, value: Any, spec_param: dict[str, Any] | None
-) -> Any:
-    """Transforms an input according to the rules given in
-    NarrativeMethodStore.ServiceMethodInputMapping
+def transform_param_value(  # noqa: C901, PLR0912, PLR0911, ANN201
+    transform_type: str | None,
+    value,
+    spec_param: dict[str, Any] | None,  # noqa: ANN001
+):
+    """Transforms an input using the rules in NarrativeMethodStore.ServiceMethodInputMapping.
+
     Really, there are three types of transforms possible:
       1. ref - turns the input string into a workspace ref.
       2. int - tries to coerce the input string into an int.
@@ -778,8 +812,10 @@ def transform_param_value(
     raise ValueError(err_msg)
 
 
-def transform_object_value(transform_type: str | None, value: str | None) -> str | None:
-    """Cases:
+def transform_object_value(transform_type: str | None, value: str | None) -> str | None:  # noqa: PLR0911, C901
+    """Transforms an input value according to the app spec.
+
+    Cases:
     transform = ref, unresolved-ref, or putative-ref:
         - should return wsname / object name
     transform = upa or resolved-ref:
@@ -797,7 +833,6 @@ def transform_object_value(transform_type: str | None, value: str | None) -> str
     "putative-ref" is a special case where the value is an object name and the object may or
     may not exist. It is used to deal with the input from SpeciesTreeBuilder; if that app gets
     fixed, it can be removed.
-
     """
     if value is None:
         return None
@@ -836,9 +871,10 @@ def transform_object_value(transform_type: str | None, value: str | None) -> str
         transform = transform_type
         if transform is None:
             transform = "object name"
-        raise ValueError(
+        err_str = (
             f"Unable to find object reference '{search_ref}' to transform as {transform}: " + str(e)
         )
+        raise ValueError(err_str) from e
 
     if is_path or transform_type in ["resolved-ref", "upa"]:
         return ";".join(obj_info["paths"][0])
diff --git a/src/biokbase/narrative/tests/test_app_util.py b/src/biokbase/narrative/tests/test_app_util.py
index 12959a7e05..0b92e3c7d1 100644
--- a/src/biokbase/narrative/tests/test_app_util.py
+++ b/src/biokbase/narrative/tests/test_app_util.py
@@ -260,6 +260,11 @@ def test_map_outputs_from_state_bad_spec(workspace_name):
         {"text_options": {"valid_ws_types": ["KBaseGenomes.Genome", "FooBar.Baz"]}},
         {"allowed_types": ["KBaseGenomes.Genome", "FooBar.Baz"]},
     ),
+    (
+        "text",
+        {"text_options": {"valid_ws_types": ["*", "FooBar.Baz"]}},
+        {"allowed_types": ["*", "FooBar.Baz"]},
+    ),
     (
         "text",
         {"text_options": {"regex_constraint": "/\\d+/"}},
diff --git a/src/biokbase/narrative/tests/test_appmanager.py b/src/biokbase/narrative/tests/test_appmanager.py
index 1a98dcaf02..1e823f294d 100644
--- a/src/biokbase/narrative/tests/test_appmanager.py
+++ b/src/biokbase/narrative/tests/test_appmanager.py
@@ -985,6 +985,22 @@ def test_validate_params(self):
         assert "12345/8/1" in ws_inputs
         assert "12345/7/1" in ws_inputs
 
+    @mock.patch(CLIENTS_AM_SM, get_mock_client)
+    @mock.patch(CLIENTS_SM, get_mock_client)
+    def test_validate_params_wildcard_type(self):
+        inputs = {
+            "input_ref": READS_OBJ_1,
+            "destination_dir": "workspace_export",
+            "format": "legacy_data_import_export",
+        }
+        app_id = "kb_staging_exporter/export_json_to_staging"
+        tag = "dev"
+        spec = self.am.spec_manager.get_spec(app_id, tag=tag)
+        spec_params = self.am.spec_manager.app_params(spec)
+        (params, ws_inputs) = app_util.validate_parameters(app_id, tag, spec_params, inputs)
+        assert params == inputs
+        assert ws_inputs == ["12345/7/1"]
+
     @mock.patch(CLIENTS_AM_SM, get_mock_client)
     @mock.patch(CLIENTS_SM, get_mock_client)
     @mock.patch(CLIENTS, get_mock_client)

From bba7eabb0c26ee9ebcf4f9104d05d37ad4e95173 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 15 Jul 2024 13:46:51 -0400
Subject: [PATCH 16/24] update reportview to use the new blobstore links for
 file downloads

---
 .../function_output/kbaseReportView.js        | 29 +++++--------------
 .../function_output/kbaseReportView-spec.js   |  9 ++----
 2 files changed, 11 insertions(+), 27 deletions(-)

diff --git a/kbase-extension/static/kbase/js/widgets/function_output/kbaseReportView.js b/kbase-extension/static/kbase/js/widgets/function_output/kbaseReportView.js
index 8149e08a88..1a9531a164 100644
--- a/kbase-extension/static/kbase/js/widgets/function_output/kbaseReportView.js
+++ b/kbase-extension/static/kbase/js/widgets/function_output/kbaseReportView.js
@@ -34,7 +34,6 @@ define([
     Events,
     OutputWidget
 ) => {
-    'use strict';
     return KBWidget({
         name: 'kbaseReportView',
         version: '1.0.0',
@@ -86,26 +85,15 @@ define([
         },
 
         /**
-         * This builds a link to the data_import_export service for downloading some file from
+         * This builds a link to the Blobstore service for downloading some file from
          * a shock node. This gets used for downloading files referenced from the report object.
          * If the given url is not really a shock node, this returns null.
          * @param {string} shockUrl - the URL to the shock node containing some file to fetch
-         * @param {string} name - the name of the file to download
          */
-        importExportLink: function (shockUrl, name) {
+        importExportLink: function (shockUrl) {
             const m = shockUrl.match(/\/node\/(.+)$/);
             if (m) {
-                const query = {
-                    id: m[1],
-                    wszip: 0,
-                    name: name,
-                };
-                const queryString = Object.keys(query)
-                    .map((key) => {
-                        return [key, query[key]].map(encodeURIComponent).join('=');
-                    })
-                    .join('&');
-                return Config.url('data_import_export') + '/download?' + queryString;
+                return `${Config.url('blobstore')}/node/${m[1]}?download`;
             }
             return null;
         },
@@ -479,18 +467,16 @@ define([
 
             const downloadIframeId = 'file-download-' + new UUID(4).format();
             const linkList = ul(
-                fileLinks.map((link, idx) => {
+                fileLinks.map((link) => {
                     const linkText = link.name || link.URL;
+                    const dlLink = this.importExportLink(link.URL);
                     return li(
                         a(
                             {
                                 id: events.addEvent({
                                     type: 'click',
-                                    handler: () => {
-                                        const dlLink = this.importExportLink(
-                                            link.URL,
-                                            link.name || 'download-' + idx
-                                        );
+                                    handler: (e) => {
+                                        e.preventDefault();
                                         ui.getElement(downloadIframeId).setAttribute('src', dlLink);
                                     },
                                 }),
@@ -498,6 +484,7 @@ define([
                                 type: 'button',
                                 ariaLabel: `download file ${linkText}`,
                                 download: 'download',
+                                href: dlLink,
                             },
                             linkText
                         )
diff --git a/test/unit/spec/function_output/kbaseReportView-spec.js b/test/unit/spec/function_output/kbaseReportView-spec.js
index c93bdf8449..d59f2b6446 100644
--- a/test/unit/spec/function_output/kbaseReportView-spec.js
+++ b/test/unit/spec/function_output/kbaseReportView-spec.js
@@ -6,7 +6,6 @@ define([
     'narrativeConfig',
     'testUtil',
 ], (ReportView, Jupyter, $, Mocks, Config, TestUtil) => {
-    'use strict';
     const FAKE_SERV_URL = 'https://ci.kbase.us/report_serv';
     const REPORT_REF = '1/2/3';
 
@@ -330,10 +329,8 @@ define([
                 badUrl = 'https://ci.kbase.us/not/a/shock/url';
             expect(reportWidget.importExportLink(badUrl, name)).toBeNull();
             const result = reportWidget.importExportLink(goodUrl, name);
-            expect(result).toMatch(new RegExp('^' + Config.url('data_import_export')));
-            expect(result).toContain('wszip=0');
-            expect(result).toContain('name=some_file.txt');
-            expect(result).toContain('id=' + shockNode);
+            expect(result).toMatch(new RegExp('^' + Config.url('blobstore')));
+            expect(result).toContain('/node/' + shockNode + '?download');
         });
 
         it('should respond to errors by rendering an error string', async function () {
@@ -416,7 +413,7 @@ define([
             const fileInfo = REPORT_OBJ.file_links[0];
             const fileUrlParts = fileInfo.URL.split('/');
             const fileNode = fileUrlParts[fileUrlParts.length - 1];
-            const expectedUrl = `${Config.url('data_import_export')}/download?id=${fileNode}&wszip=0&name=${fileInfo.name}`;
+            const expectedUrl = `${Config.url('blobstore')}/node/${fileNode}?download`;
             expect(dlIframe.getAttribute('src')).toEqual(expectedUrl);
         });
     });

From efdf559552275f1540a772e00b48f7aee832c59c Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 15 Jul 2024 17:00:51 -0400
Subject: [PATCH 17/24] add new text-only output message

---
 .../appCell2/widgets/appCellWidget.js         |  6 +--
 .../appCell2/widgets/tabs/resultsViewer.js    | 36 ++++++++++++++--
 .../widgets/tabs/resultsViewer-spec.js        | 41 ++++++++++++++++++-
 3 files changed, 74 insertions(+), 9 deletions(-)

diff --git a/nbextensions/appCell2/widgets/appCellWidget.js b/nbextensions/appCell2/widgets/appCellWidget.js
index faa3e88849..30a6a3aaa5 100644
--- a/nbextensions/appCell2/widgets/appCellWidget.js
+++ b/nbextensions/appCell2/widgets/appCellWidget.js
@@ -76,8 +76,6 @@ define(
         AppParamsWidget,
         AppParamsViewWidget
     ) => {
-        'use strict';
-
         const t = html.tag,
             div = t('div'),
             span = t('span'),
@@ -1301,7 +1299,8 @@ define(
                 skip the output cell creation.
                 */
                 // widgets named 'no-display' are a trigger to skip the output cell process.
-                const skipOutputCell = model.getItem('exec.outputWidgetInfo.name') === 'no-display';
+                const widgetName = model.getItem('exec.outputWidgetInfo.name');
+                const skipOutputCell = widgetName === 'no-display' || widgetName === 'text-only';
                 let cellInfo;
                 if (skipOutputCell) {
                     cellInfo = {
@@ -1834,7 +1833,6 @@ define(
         };
     },
     (err) => {
-        'use strict';
         console.error('ERROR loading appCell appCellWidget', err);
     }
 );
diff --git a/nbextensions/appCell2/widgets/tabs/resultsViewer.js b/nbextensions/appCell2/widgets/tabs/resultsViewer.js
index ad9dd5cc9c..9b870d593b 100644
--- a/nbextensions/appCell2/widgets/tabs/resultsViewer.js
+++ b/nbextensions/appCell2/widgets/tabs/resultsViewer.js
@@ -7,9 +7,20 @@ define([
     'kb_service/client/narrativeMethodStore',
     'common/html',
     'util/display',
+    'util/string',
     'kbaseReportView',
-], (Promise, $, UI, Runtime, Events, NarrativeMethodStore, html, DisplayUtil, KBaseReportView) => {
-    'use strict';
+], (
+    Promise,
+    $,
+    UI,
+    Runtime,
+    Events,
+    NarrativeMethodStore,
+    html,
+    DisplayUtil,
+    StringUtil,
+    KBaseReportView
+) => {
     const t = html.tag,
         div = t('div'),
         a = t('a'),
@@ -90,17 +101,36 @@ define([
             // the job output
             if (!reportInputs) {
                 return Promise.try(() => {
+                    const viewerName = result ? result.name : null;
                     const jobOutput = jobState.job_output
                         ? jobState.job_output.result
                         : 'no output found';
+                    if (viewerName === 'text-only') {
+                        ui.setContent('results.body', buildOutputText(result.params.result_text));
+                    } else {
+                        ui.setContent('results.body', ui.buildPresentableJson(jobOutput));
+                    }
                     ui.getElement('results').classList.remove('hidden');
-                    ui.setContent('results.body', ui.buildPresentableJson(jobOutput));
                 });
             }
             // otherwise, render the report
             return renderReportView(reportInputs);
         }
 
+        function buildOutputText(resultText) {
+            // default if text is empty, null, or undefined
+            if (resultText === null || resultText === undefined || resultText === '') {
+                resultText = 'App completed successfully.';
+            }
+            // cap the results at 1,000 characters.
+            if (resultText.length > 1000) {
+                resultText =
+                    resultText.substring(0, 1000) +
+                    ` [truncated from ${resultText.length} characters]`;
+            }
+            return div(StringUtil.escape(resultText));
+        }
+
         function lazyRenderReport() {
             return Promise.try(() => {
                 const nbContainer = document.querySelector('#notebook-container');
diff --git a/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js b/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
index 26b3cd0377..bf9ee848b4 100644
--- a/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
+++ b/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
@@ -6,8 +6,6 @@ define([
     'testUtil',
     'narrativeMocks',
 ], (ResultsViewer, Props, Jupyter, Config, TestUtil, Mocks) => {
-    'use strict';
-
     const mockModelData = {
         exec: {},
         app: {
@@ -23,6 +21,7 @@ define([
     };
 
     const mockOutputWidgetInfo = {
+        name: 'no-display',
         params: {
             report_name: 'some_report',
             report_ref: '1/2/3',
@@ -57,6 +56,32 @@ define([
         return Props.make({ data });
     }
 
+    /**
+     * Builds and returns a mock data model (Props object) and final job state.
+     * @param {int} textLength
+     * @returns
+     */
+    function buildTextModel(textLength) {
+        const data = TestUtil.JSONcopy(mockModelData);
+        const resultText = 'A'.repeat(textLength);
+        const outputInfo = {
+            name: 'text-only',
+            params: {
+                result_text: resultText,
+            },
+        };
+        const state = {
+            job_output: {
+                result: [outputInfo],
+            },
+        };
+        data.exec.outputWidgetInfo = outputInfo;
+        return {
+            model: Props.make({ data }),
+            state,
+        };
+    }
+
     describe('App Cell Results Viewer tests', () => {
         let node, outerNode;
 
@@ -123,6 +148,18 @@ define([
             }
         });
 
+        it('starts a viewer with text output', async () => {
+            const { model, state } = buildTextModel(10);
+            const viewer = ResultsViewer.make({ model });
+            await viewer.start({
+                node,
+                jobState: state,
+                isParentJob: false,
+            });
+            expect(node.querySelector('.kb-app-results-tab')).toBeDefined();
+            expect(node.innerHTML).toContain('A'.repeat(10));
+        });
+
         it('starts and stops a viewer with a report from a batch job', async () => {
             const model = buildModel({ hasReport: true, isParentJob: true, jobComplete: true });
             const viewer = ResultsViewer.make({ model });

From e4d6f63647ff460d317fa4d191f4a464c502b801 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 15 Jul 2024 17:03:53 -0400
Subject: [PATCH 18/24] make truncated text viewer test

---
 .../appCell2/widgets/tabs/resultsViewer-spec.js   | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js b/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
index bf9ee848b4..17aa261225 100644
--- a/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
+++ b/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
@@ -160,6 +160,21 @@ define([
             expect(node.innerHTML).toContain('A'.repeat(10));
         });
 
+        it('starts a viewer with truncated output', async () => {
+            const textLength = 10000;
+            const maxLen = 1000;
+            const { model, state } = buildTextModel(textLength);
+            const viewer = ResultsViewer.make({ model });
+            await viewer.start({
+                node,
+                jobState: state,
+                isParentJob: false,
+            });
+            expect(node.querySelector('.kb-app-results-tab')).toBeDefined();
+            expect(node.innerHTML).toContain('A'.repeat(maxLen));
+            expect(node.innerHTML).toContain(`[truncated from ${textLength} characters]`);
+        });
+
         it('starts and stops a viewer with a report from a batch job', async () => {
             const model = buildModel({ hasReport: true, isParentJob: true, jobComplete: true });
             const viewer = ResultsViewer.make({ model });

From 34cda5e51013810681a7e7974ed30f44cd757875 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Mon, 15 Jul 2024 21:33:45 -0400
Subject: [PATCH 19/24] add checks for any non-string or non-number to make the
 default message.

---
 .../appCell2/widgets/tabs/resultsViewer.js    | 15 +++++-
 .../widgets/tabs/resultsViewer-spec.js        | 51 +++++++++++++++----
 2 files changed, 54 insertions(+), 12 deletions(-)

diff --git a/nbextensions/appCell2/widgets/tabs/resultsViewer.js b/nbextensions/appCell2/widgets/tabs/resultsViewer.js
index 9b870d593b..830232e6c8 100644
--- a/nbextensions/appCell2/widgets/tabs/resultsViewer.js
+++ b/nbextensions/appCell2/widgets/tabs/resultsViewer.js
@@ -117,11 +117,24 @@ define([
             return renderReportView(reportInputs);
         }
 
+        /**
+         * Expects that the result text should be a string, but handles other cases as well.
+         * If resultText is not a string or number, or is an empty string, this sets the text
+         * to "App completed successfully." Otherwise, it truncates the result to 1000 characters.
+         *
+         * This then gets HTML-escaped and embedded in a div for returning.
+         * @param {str} resultText
+         * @returns
+         */
         function buildOutputText(resultText) {
             // default if text is empty, null, or undefined
-            if (resultText === null || resultText === undefined || resultText === '') {
+            if (
+                !(typeof resultText === 'string' && resultText.trim().length > 0) &&
+                typeof resultText !== 'number'
+            ) {
                 resultText = 'App completed successfully.';
             }
+            resultText = String(resultText).trim();
             // cap the results at 1,000 characters.
             if (resultText.length > 1000) {
                 resultText =
diff --git a/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js b/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
index 17aa261225..cbec54d2da 100644
--- a/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
+++ b/test/unit/spec/nbextensions/appCell2/widgets/tabs/resultsViewer-spec.js
@@ -58,19 +58,18 @@ define([
 
     /**
      * Builds and returns a mock data model (Props object) and final job state.
-     * @param {int} textLength
+     * @param {string} text - if present, this gets used instead of a random string
      * @returns
      */
-    function buildTextModel(textLength) {
+    function buildTextModel(resultText) {
         const data = TestUtil.JSONcopy(mockModelData);
-        const resultText = 'A'.repeat(textLength);
         const outputInfo = {
             name: 'text-only',
             params: {
                 result_text: resultText,
             },
         };
-        const state = {
+        const jobState = {
             job_output: {
                 result: [outputInfo],
             },
@@ -78,7 +77,7 @@ define([
         data.exec.outputWidgetInfo = outputInfo;
         return {
             model: Props.make({ data }),
-            state,
+            jobState,
         };
     }
 
@@ -149,32 +148,62 @@ define([
         });
 
         it('starts a viewer with text output', async () => {
-            const { model, state } = buildTextModel(10);
+            const resultText = 'ABCDEFGHIJKL';
+            const { model, jobState } = buildTextModel(resultText);
             const viewer = ResultsViewer.make({ model });
             await viewer.start({
                 node,
-                jobState: state,
+                jobState,
                 isParentJob: false,
             });
             expect(node.querySelector('.kb-app-results-tab')).toBeDefined();
-            expect(node.innerHTML).toContain('A'.repeat(10));
+            expect(node.innerHTML).toContain(resultText);
         });
 
         it('starts a viewer with truncated output', async () => {
             const textLength = 10000;
+            const resultText = 'A'.repeat(textLength);
             const maxLen = 1000;
-            const { model, state } = buildTextModel(textLength);
+            const { model, jobState } = buildTextModel(resultText);
             const viewer = ResultsViewer.make({ model });
             await viewer.start({
                 node,
-                jobState: state,
+                jobState,
                 isParentJob: false,
             });
             expect(node.querySelector('.kb-app-results-tab')).toBeDefined();
-            expect(node.innerHTML).toContain('A'.repeat(maxLen));
+            expect(node.innerHTML).toContain(resultText.substring(0, maxLen));
             expect(node.innerHTML).toContain(`[truncated from ${textLength} characters]`);
         });
 
+        const defaultCases = [null, undefined, {}, [], '', '   '];
+        defaultCases.forEach((testCase) =>
+            it(`creates a text viewer with default success for input ${testCase}`, async () => {
+                const { model, jobState } = buildTextModel(testCase);
+                const viewer = ResultsViewer.make({ model });
+                await viewer.start({
+                    node,
+                    jobState,
+                    isParentJob: false,
+                });
+                expect(node.querySelector('.kb-app-results-tab')).toBeDefined();
+                expect(node.innerHTML).toContain('App completed successfully.');
+            })
+        );
+
+        it('creates a text viewer that escapes html', async () => {
+            const resultText = '<script>alert("this failed!")</script>';
+            const { model, jobState } = buildTextModel(resultText);
+            const viewer = ResultsViewer.make({ model });
+            await viewer.start({
+                node,
+                jobState,
+                isParentJob: false,
+            });
+            expect(node.querySelector('.kb-app-results-tab')).toBeDefined();
+            expect(node.innerHTML).toContain('&lt;script&gt;alert');
+        });
+
         it('starts and stops a viewer with a report from a batch job', async () => {
             const model = buildModel({ hasReport: true, isParentJob: true, jobComplete: true });
             const viewer = ResultsViewer.make({ model });

From 9b176383c9b79296530f404756d5c36a9e2fefc6 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Tue, 16 Jul 2024 11:32:15 -0400
Subject: [PATCH 20/24] remove final vestiges of DIE, convert download panel
 inline css to scss module

---
 docs/developer/widget_helper_modules.md       |  1 -
 kbase-extension/scss/all_concat.scss          |  1 +
 .../scss/partials/_downloadPanel.scss         | 27 +++++++++++++++++++
 .../kbase/config/cdn-service-config.json      |  6 +----
 .../static/kbase/config/services-appdev.json  |  6 +----
 .../static/kbase/config/services-ci.json      |  6 +----
 .../kbase/config/services-local-dev.json      |  6 +----
 .../static/kbase/config/services-next.json    |  6 +----
 .../static/kbase/config/services-prod.json    |  6 +----
 .../static/kbase/css/all_concat.css           |  2 +-
 .../static/kbase/css/all_concat.css.map       |  2 +-
 .../kbaseNarrativeDownloadPanel.js            | 21 +++++----------
 package-lock.json                             |  9 +++----
 src/config.json                               |  7 -----
 src/config.json.templ                         |  7 -----
 15 files changed, 47 insertions(+), 66 deletions(-)
 create mode 100644 kbase-extension/scss/partials/_downloadPanel.scss

diff --git a/docs/developer/widget_helper_modules.md b/docs/developer/widget_helper_modules.md
index d86b803269..8e4e886c2c 100644
--- a/docs/developer/widget_helper_modules.md
+++ b/docs/developer/widget_helper_modules.md
@@ -21,7 +21,6 @@ This replies with the currently configured service (or other) url endpoints. Sup
 ```
 awe
 catalog
-data_import_export
 fba
 feature_values
 gene_families
diff --git a/kbase-extension/scss/all_concat.scss b/kbase-extension/scss/all_concat.scss
index 9548ce700a..d06c521e1e 100644
--- a/kbase-extension/scss/all_concat.scss
+++ b/kbase-extension/scss/all_concat.scss
@@ -37,6 +37,7 @@
 @import "partials/bulkImportCell";
 @import "partials/cellToolbar";
 @import "partials/dataStaging";
+@import "partials/downloadPanel";
 @import "partials/dropzoneDz";
 @import "partials/errorDisplay";
 @import "partials/errorMessage";
diff --git a/kbase-extension/scss/partials/_downloadPanel.scss b/kbase-extension/scss/partials/_downloadPanel.scss
new file mode 100644
index 0000000000..64e8dc154d
--- /dev/null
+++ b/kbase-extension/scss/partials/_downloadPanel.scss
@@ -0,0 +1,27 @@
+.kb-download-panel {
+    display: flex;
+
+    // .kb-download-panel__label
+    &__label {
+        white-space: nowrap;
+        padding: 1px;
+        align-self: center;
+    }
+
+    // .kb-download-panel__buttons
+    &__buttons {
+        text-align: left;
+        padding: 1px;
+    }
+
+    // .kb-download-panel__status
+    &__status {
+        margin: 15px;
+        word-wrap: wrap-word;
+        overflow: none;
+
+        &__error {
+            color: use-color('error');
+        }
+    }
+}
diff --git a/kbase-extension/static/kbase/config/cdn-service-config.json b/kbase-extension/static/kbase/config/cdn-service-config.json
index a0e850fc2d..3233841870 100644
--- a/kbase-extension/static/kbase/config/cdn-service-config.json
+++ b/kbase-extension/static/kbase/config/cdn-service-config.json
@@ -8,10 +8,6 @@
             "url": "https://kbase.us/services/cdmi_api",
             "name": "CDMI"
         },
-        "data_import_export": {
-            "url": "https://ci.kbase.us/services/data_import_export",
-            "name": "Data Import Export"
-        },
         "fba": {
             "url": "https://ci.kbase.us/services/KBaseFBAModeling",
             "name": "FBA"
@@ -147,4 +143,4 @@
         "icon": "flask",
         "name": "Continuous Integration"
     }
-}
\ No newline at end of file
+}
diff --git a/kbase-extension/static/kbase/config/services-appdev.json b/kbase-extension/static/kbase/config/services-appdev.json
index 868c2d8157..84ef375081 100644
--- a/kbase-extension/static/kbase/config/services-appdev.json
+++ b/kbase-extension/static/kbase/config/services-appdev.json
@@ -8,10 +8,6 @@
             "url": "https://kbase.us/services/cdmi_api",
             "name": "CDMI"
         },
-        "data_import_export": {
-            "url": "https://kbase.us/services/data_import_export",
-            "name": "Data Import Export"
-        },
         "fba": {
             "url": "https://kbase.us/services/KBaseFBAModeling",
             "name": "FBA"
@@ -151,4 +147,4 @@
         "icon": "wrench",
         "name": "App Dev"
     }
-}
\ No newline at end of file
+}
diff --git a/kbase-extension/static/kbase/config/services-ci.json b/kbase-extension/static/kbase/config/services-ci.json
index b18c6dd31d..e60e1aa8ea 100644
--- a/kbase-extension/static/kbase/config/services-ci.json
+++ b/kbase-extension/static/kbase/config/services-ci.json
@@ -8,10 +8,6 @@
             "url": "https://kbase.us/services/cdmi_api",
             "name": "CDMI"
         },
-        "data_import_export": {
-            "url": "https://ci.kbase.us/services/data_import_export",
-            "name": "Data Import Export"
-        },
         "fba": {
             "url": "https://ci.kbase.us/services/KBaseFBAModeling",
             "name": "FBA"
@@ -151,4 +147,4 @@
         "icon": "flask",
         "name": "Continuous Integration"
     }
-}
\ No newline at end of file
+}
diff --git a/kbase-extension/static/kbase/config/services-local-dev.json b/kbase-extension/static/kbase/config/services-local-dev.json
index 9ee74fc8e5..614011617b 100644
--- a/kbase-extension/static/kbase/config/services-local-dev.json
+++ b/kbase-extension/static/kbase/config/services-local-dev.json
@@ -8,10 +8,6 @@
             "url": "https://kbase.us/services/cdmi_api",
             "name": "CDMI"
         },
-        "data_import_export": {
-            "url": "https://ci.kbase.us/services/data_import_export",
-            "name": "Data Import Export"
-        },
         "fba": {
             "url": "https://ci.kbase.us/services/KBaseFBAModeling",
             "name": "FBA"
@@ -151,4 +147,4 @@
         "icon": "paper-plane",
         "name": "Local Development"
     }
-}
\ No newline at end of file
+}
diff --git a/kbase-extension/static/kbase/config/services-next.json b/kbase-extension/static/kbase/config/services-next.json
index fdcdfabe4e..9e3b49e5d2 100644
--- a/kbase-extension/static/kbase/config/services-next.json
+++ b/kbase-extension/static/kbase/config/services-next.json
@@ -8,10 +8,6 @@
             "url": "https://kbase.us/services/cdmi_api",
             "name": "CDMI"
         },
-        "data_import_export": {
-            "url": "https://next.kbase.us/services/data_import_export",
-            "name": "Data Import Export"
-        },
         "fba": {
             "url": "https://next.kbase.us/services/KBaseFBAModeling",
             "name": "FBA"
@@ -151,4 +147,4 @@
         "icon": "bullseye",
         "name": "Next"
     }
-}
\ No newline at end of file
+}
diff --git a/kbase-extension/static/kbase/config/services-prod.json b/kbase-extension/static/kbase/config/services-prod.json
index 34d489426a..e1c3a22195 100644
--- a/kbase-extension/static/kbase/config/services-prod.json
+++ b/kbase-extension/static/kbase/config/services-prod.json
@@ -8,10 +8,6 @@
             "url": "https://kbase.us/services/cdmi_api",
             "name": "CDMI"
         },
-        "data_import_export": {
-            "url": "https://kbase.us/services/data_import_export",
-            "name": "Data Import Export"
-        },
         "fba": {
             "url": "https://kbase.us/services/KBaseFBAModeling",
             "name": "FBA"
@@ -151,4 +147,4 @@
         "icon": "thumbs-up",
         "name": "Production"
     }
-}
\ No newline at end of file
+}
diff --git a/kbase-extension/static/kbase/css/all_concat.css b/kbase-extension/static/kbase/css/all_concat.css
index e39b6d7425..38d1250449 100644
--- a/kbase-extension/static/kbase/css/all_concat.css
+++ b/kbase-extension/static/kbase/css/all_concat.css
@@ -1 +1 @@
-@charset "UTF-8";@font-face{font-family:Glyphicons Halflings;src:url(../../ext_components/bootstrap/dist/fonts/glyphicons-halflings-regular.eot);src:url(../../ext_components/bootstrap/dist/fonts/glyphicons-halflings-regular.eot?#iefix) format("embedded-opentype"),url(../../ext_components/bootstrap/dist/fonts/glyphicons-halflings-regular.woff2) format("woff2"),url(../../ext_components/bootstrap/dist/fonts/glyphicons-halflings-regular.woff) format("woff"),url(../../ext_components/bootstrap/dist/fonts/glyphicons-halflings-regular.ttf) format("truetype"),url(../../ext_components/bootstrap/dist/fonts/glyphicons-halflings-regular.svg#glyphicons_halflingsregular) format("svg")}@font-face{font-family:kbase-icons;font-style:normal;font-weight:400;src:url(../fonts/kbase-icons.eot);src:url(../fonts/kbase-icons.eot?#iefix) format("embedded-opentype"),url(../fonts/kbase-icons.woff) format("woff"),url(../fonts/kbase-icons.ttf) format("truetype"),url(../fonts/kbase-icons.svg#kbase-icons) format("svg")}@font-face{font-family:Oxygen;font-style:normal;font-weight:400;src:url(../fonts/Oxygen-webfont.eot);src:url(../fonts/Oxygen-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/Oxygen-webfont.woff) format("woff"),url(../fonts/Oxygen-webfont.ttf) format("truetype"),url(../fonts/Oxygen-webfont.svg#OxygenRegular) format("svg")}@font-face{font-family:Oxygen;font-style:normal;font-weight:700;src:url(../fonts/Oxygen-Bold-webfont.eot);src:url(../fonts/Oxygen-Bold-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/Oxygen-Bold-webfont.woff) format("woff"),url(../fonts/Oxygen-Bold-webfont.ttf) format("truetype"),url(../fonts/Oxygen-Bold-webfont.svg#OxygenBold) format("svg")}@font-face{font-family:Oxygen;font-style:italic;font-weight:400;src:url(../fonts/Oxygen-Italic-webfont.eot);src:url(../fonts/Oxygen-Italic-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/Oxygen-Italic-webfont.woff) format("woff"),url(../fonts/Oxygen-Italic-webfont.ttf) format("truetype"),url(../fonts/Oxygen-Italic-webfont.svg#OxygenItalic) format("svg")}@font-face{font-family:Oxygen;font-style:italic;font-weight:700;src:url(../fonts/Oxygen-BoldItalic-webfont.eot);src:url(../fonts/Oxygen-BoldItalic-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/Oxygen-BoldItalic-webfont.woff) format("woff"),url(../fonts/Oxygen-BoldItalic-webfont.ttf) format("truetype"),url(../fonts/Oxygen-BoldItalic-webfont.svg#OxygenBoldItalic) format("svg")}@font-face{font-family:OxygenMono;font-style:normal;font-weight:400;src:url(../fonts/OxygenMono-Regular-webfont.eot);src:url(../fonts/OxygenMono-Regular-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/OxygenMono-Regular-webfont.woff) format("woff"),url(../fonts/OxygenMono-Regular-webfont.ttf) format("truetype"),url(../fonts/OxygenMono-Regular-webfont.svg#OxygenMonoRegular) format("svg")}@font-face{font-family:OxygenRegular;font-style:normal;font-weight:400;src:url(../fonts/Oxygen-webfont.eot);src:url(../fonts/Oxygen-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/Oxygen-webfont.woff) format("woff"),url(../fonts/Oxygen-webfont.ttf) format("truetype"),url(../fonts/Oxygen-webfont.svg#OxygenRegular) format("svg")}@font-face{font-family:OxygenBold;font-style:normal;font-weight:400;src:url(../fonts/Oxygen-Bold-webfont.eot);src:url(../fonts/Oxygen-Bold-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/Oxygen-Bold-webfont.woff) format("woff"),url(../fonts/Oxygen-Bold-webfont.ttf) format("truetype"),url(../fonts/Oxygen-Bold-webfont.svg#OxygenBold) format("svg")}@font-face{font-family:RobotoBlack;font-style:normal;font-weight:400;src:url(../fonts/Roboto-Black-webfont.eot);src:url(../fonts/Roboto-Black-webfont.eot?#iefix) format("embedded-opentype"),url(../fonts/Roboto-Black-webfont.woff) format("woff"),url(../fonts/Roboto-Black-webfont.ttf) 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diff --git a/kbase-extension/static/kbase/css/all_concat.css.map b/kbase-extension/static/kbase/css/all_concat.css.map
index 0960e22e2e..e5556fc914 100644
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\ No newline at end of file
diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index 0d01008f57..182c01d6e1 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -92,26 +92,19 @@ define([
         },
 
         renderStructure: function () {
-            const $container = $('<div>');
-            const $label = $('<div>')
-                .addClass('kb-download-label')
-                .css({ 'white-space': 'nowrap', padding: '1px', 'align-self': 'center' })
-                .append('Export as:');
-            const $buttons = $('<div>')
-                .addClass('kb-download-buttons')
-                .css({ padding: '1px', 'text-align': 'left' });
-            $container.css({ display: 'flex' }).append($label).append($buttons);
+            const $container = $('<div>').addClass('kb-download-panel');
+            const $label = $('<div>').addClass('kb-download-panel__label').append('Export as:');
+            const $buttons = $('<div>').addClass('kb-download-panel__buttons');
+            $container.append($label).append($buttons);
 
             this.$elem.append($container);
-            this.$statusDiv = $('<div>')
-                .addClass('kb-download-status')
-                .css({ margin: '15px', 'word-wrap': 'wrap-word', overflow: 'none' });
+            this.$statusDiv = $('<div>').addClass('kb-download-panel__status');
             this.$elem.append(this.$statusDiv.hide());
         },
 
         renderDownloadButtons: function () {
             const downloaders = this.prepareDownloaders(this.type);
-            const $btnPanel = this.$elem.find('.kb-download-buttons');
+            const $btnPanel = this.$elem.find('.kb-download-panel__buttons');
             downloaders.forEach((dlInfo) => {
                 if (dlInfo.name.toLocaleLowerCase() === 'staging') {
                     $btnPanel.append(
@@ -281,7 +274,7 @@ define([
             this.$elem.find('.kb-data-list-btn').prop('disabled', false);
             this.$statusDiv.empty().append(
                 $('<span>')
-                    .css({ color: '#F44336' })
+                    .addClass('kb-download-panel__status_error')
                     .append('Error: ' + error)
             );
         },
diff --git a/package-lock.json b/package-lock.json
index 23cb8c560c..f4f975d0a0 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -3443,9 +3443,9 @@
             }
         },
         "node_modules/caniuse-lite": {
-            "version": "1.0.30001640",
-            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001640.tgz",
-            "integrity": "sha512-lA4VMpW0PSUrFnkmVuEKBUovSWKhj7puyCg8StBChgu298N1AtuF1sKWEvfDuimSEDbhlb/KqPKC3fs1HbuQUA==",
+            "version": "1.0.30001642",
+            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001642.tgz",
+            "integrity": "sha512-3XQ0DoRgLijXJErLSl+bLnJ+Et4KqV1PY6JJBGAFlsNsz31zeAIncyeZfLCabHK/jtSh+671RM9YMldxjUPZtA==",
             "dev": true,
             "funding": [
                 {
@@ -3460,8 +3460,7 @@
                     "type": "github",
                     "url": "https://github.com/sponsors/ai"
                 }
-            ],
-            "license": "CC-BY-4.0"
+            ]
         },
         "node_modules/chalk": {
             "version": "2.4.2",
diff --git a/src/config.json b/src/config.json
index 55e10da422..8c78983859 100644
--- a/src/config.json
+++ b/src/config.json
@@ -6,7 +6,6 @@
         "catalog": "https://appdev.kbase.us/services/catalog",
         "cdn": "https://appdev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://appdev.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://appdev.kbase.us/services/ee2",
         "fba": "https://appdev.kbase.us/services/KBaseFBAModeling/",
@@ -60,7 +59,6 @@
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://ci.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://ci.kbase.us/services/ee2",
         "fba": "https://ci.kbase.us/services/KBaseFBAModeling/",
@@ -126,7 +124,6 @@
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://ci.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://ci.kbase.us/services/ee2",
         "fba": "https://ci.kbase.us/services/KBaseFBAModeling/",
@@ -182,7 +179,6 @@
         "catalog": "https://next.kbase.us/services/catalog",
         "cdn": "https://next.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://next.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://next.kbase.us/services/ee2",
         "fba": "https://next.kbase.us/services/KBaseFBAModeling/",
@@ -234,7 +230,6 @@
         "catalog": "https://kbase.us/services/catalog",
         "cdn": "https://kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://kbase.us/services/ee2-nr",
         "fba": "https://kbase.us/services/KBaseFBAModeling/",
@@ -288,7 +283,6 @@
         "catalog": "https://narrative-dev.kbase.us/services/catalog",
         "cdn": "https://narrative-dev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://narrative-dev.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://narrative-dev.kbase.us/services/ee2",
         "fba": "https://narrative-dev.kbase.us/services/KBaseFBAModeling/",
@@ -341,7 +335,6 @@
         "catalog": "https://narrative-refactor.kbase.us/services/catalog",
         "cdn": "https://narrative-refactor.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://narrative-refactor.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://narrative-refactor.kbase.us/services/ee2-nr",
         "fba": "https://narrative-refactor.kbase.us/services/KBaseFBAModeling/",
diff --git a/src/config.json.templ b/src/config.json.templ
index 99d0017e29..37fc87adc0 100644
--- a/src/config.json.templ
+++ b/src/config.json.templ
@@ -6,7 +6,6 @@
         "catalog": "https://appdev.kbase.us/services/catalog",
         "cdn": "https://appdev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://appdev.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://appdev.kbase.us/services/ee2",
         "fba": "https://appdev.kbase.us/services/KBaseFBAModeling/",
@@ -60,7 +59,6 @@
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://ci.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://ci.kbase.us/services/ee2",
         "fba": "https://ci.kbase.us/services/KBaseFBAModeling/",
@@ -126,7 +124,6 @@
         "catalog": "https://ci.kbase.us/services/catalog",
         "cdn": "https://ci.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://ci.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://ci.kbase.us/services/ee2",
         "fba": "https://ci.kbase.us/services/KBaseFBAModeling/",
@@ -182,7 +179,6 @@
         "catalog": "https://next.kbase.us/services/catalog",
         "cdn": "https://next.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://next.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://next.kbase.us/services/ee2",
         "fba": "https://next.kbase.us/services/KBaseFBAModeling/",
@@ -234,7 +230,6 @@
         "catalog": "https://kbase.us/services/catalog",
         "cdn": "https://kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://kbase.us/services/ee2",
         "fba": "https://kbase.us/services/KBaseFBAModeling/",
@@ -288,7 +283,6 @@
         "catalog": "https://narrative-dev.kbase.us/services/catalog",
         "cdn": "https://narrative-dev.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://narrative-dev.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://narrative-dev.kbase.us/services/ee2",
         "fba": "https://narrative-dev.kbase.us/services/KBaseFBAModeling/",
@@ -341,7 +335,6 @@
         "catalog": "https://narrative-refactor.kbase.us/services/catalog",
         "cdn": "https://narrative-refactor.kbase.us/cdn/files",
         "compound_img_url": "http://minedatabase.mcs.anl.gov/compound_images/ModelSEED/",
-        "data_import_export": "https://narrative-refactor.kbase.us/services/data_import_export",
         "data_panel_sources": "/data_source_config.json",
         "execution_engine2": "https://narrative-refactor.kbase.us/services/ee2-nr",
         "fba": "https://narrative-refactor.kbase.us/services/KBaseFBAModeling/",

From 88b3a7d7f619a9fc0790876c970b1e70ab0facb9 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Wed, 17 Jul 2024 10:45:15 -0400
Subject: [PATCH 21/24] fix bug with displaying wildcard in data type input in
 app cell info tab

---
 .../js/common/cellComponents/tabs/infoTab.js  | 20 +++++++-------
 .../cellComponents/tabs/infoTab-Spec.js       | 26 ++++++++++++++++---
 2 files changed, 33 insertions(+), 13 deletions(-)

diff --git a/kbase-extension/static/kbase/js/common/cellComponents/tabs/infoTab.js b/kbase-extension/static/kbase/js/common/cellComponents/tabs/infoTab.js
index e9bf90ec7b..1e7d7e55b2 100644
--- a/kbase-extension/static/kbase/js/common/cellComponents/tabs/infoTab.js
+++ b/kbase-extension/static/kbase/js/common/cellComponents/tabs/infoTab.js
@@ -4,8 +4,6 @@ define(['domPurify', 'common/format', 'common/html', 'util/string'], (
     html,
     string
 ) => {
-    'use strict';
-
     // Note - would destructure in the arguments, but that would require a change to eslint rules.
     const { sanitize } = DOMPurify;
 
@@ -29,7 +27,11 @@ define(['domPurify', 'common/format', 'common/html', 'util/string'], (
         const parameterArray = appSpec.parameters.map((param) => {
             const textOptions = param.text_options;
             let types = null;
-            if (textOptions && Array.isArray(textOptions.valid_ws_types)) {
+            if (
+                textOptions &&
+                Array.isArray(textOptions.valid_ws_types) &&
+                textOptions.valid_ws_types.indexOf('*') === -1
+            ) {
                 const typesArray = textOptions.valid_ws_types.map((type) => {
                     return a(
                         {
@@ -220,12 +222,12 @@ define(['domPurify', 'common/format', 'common/html', 'util/string'], (
                             ),
                             appTag
                                 ? span(
-                                    {
-                                        class: `${cssBaseClass}__tag label label-primary`,
-                                        title: `${appTag} version of the app`,
-                                    },
-                                    appTag
-                                )
+                                      {
+                                          class: `${cssBaseClass}__tag label label-primary`,
+                                          title: `${appTag} version of the app`,
+                                      },
+                                      appTag
+                                  )
                                 : '',
                         ]
                     ),
diff --git a/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js b/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js
index 27e282fed6..91d9292c4c 100644
--- a/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js
+++ b/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js
@@ -3,9 +3,7 @@ define(['common/cellComponents/tabs/infoTab', 'common/props', 'testUtil'], (
     Props,
     TestUtil
 ) => {
-    'use strict';
-
-    describe('The App Info Tab module', () => {
+    fdescribe('The App Info Tab module', () => {
         it('loads', () => {
             expect(InfoTab).not.toBe(null);
         });
@@ -16,7 +14,7 @@ define(['common/cellComponents/tabs/infoTab', 'common/props', 'testUtil'], (
         });
     });
 
-    describe('The App Info Tab instance', () => {
+    fdescribe('The App Info Tab instance', () => {
         afterEach(() => {
             TestUtil.clearRuntime();
         });
@@ -86,6 +84,13 @@ define(['common/cellComponents/tabs/infoTab', 'common/props', 'testUtil'], (
                             ui_name: 'Adapters',
                             id: 'adapters',
                         },
+                        {
+                            text_options: {
+                                valid_ws_types: ['*', 'SomeModule.SomeType'],
+                            },
+                            ui_name: 'Any old object',
+                            id: 'any_old_object',
+                        },
                     ],
                 },
                 tag: APP.ONE.TAG,
@@ -305,6 +310,19 @@ define(['common/cellComponents/tabs/infoTab', 'common/props', 'testUtil'], (
                     ).toBe(appData[APP.ONE.ID].app.spec.parameters[1].ui_name);
                 });
 
+                it('renders no links for a parameter than can be a wildcard type', () => {
+                    const paramThree = container.querySelectorAll(
+                        `.${cssBaseClass}__list_item--params`
+                    )[2];
+                    expect(
+                        paramThree.querySelector(`.${cssBaseClass}__param--id`).textContent
+                    ).toBe(appData[APP.ONE.ID].app.spec.parameters[2].id);
+                    expect(
+                        paramThree.querySelector(`.${cssBaseClass}__param--ui-name`).textContent
+                    ).toBe(appData[APP.ONE.ID].app.spec.parameters[2].ui_name);
+                    expect(paramThree.querySelectorAll('a').length).toBe(0);
+                });
+
                 it('renders run stats correctly', () => {
                     if (isMulti) {
                         // no run stats in the multi-app version

From 75e5ddfe7fd3a2a66dc4ec27e2dba795dc541cff Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Wed, 17 Jul 2024 12:19:37 -0400
Subject: [PATCH 22/24] fdescribe -> describe. oops.

---
 test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js b/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js
index 91d9292c4c..3c316e5a55 100644
--- a/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js
+++ b/test/unit/spec/common/cellComponents/tabs/infoTab-Spec.js
@@ -3,7 +3,7 @@ define(['common/cellComponents/tabs/infoTab', 'common/props', 'testUtil'], (
     Props,
     TestUtil
 ) => {
-    fdescribe('The App Info Tab module', () => {
+    describe('The App Info Tab module', () => {
         it('loads', () => {
             expect(InfoTab).not.toBe(null);
         });
@@ -14,7 +14,7 @@ define(['common/cellComponents/tabs/infoTab', 'common/props', 'testUtil'], (
         });
     });
 
-    fdescribe('The App Info Tab instance', () => {
+    describe('The App Info Tab instance', () => {
         afterEach(() => {
             TestUtil.clearRuntime();
         });

From cdb813f37f3a85003fccc14c733120d8b6c367c7 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Thu, 25 Jul 2024 12:01:39 -0400
Subject: [PATCH 23/24] fix tests and BEM stuff

---
 .../kbaseNarrativeDownloadPanel.js            | 26 +++++++++++--------
 .../kbaseNarrativeDownloadPanel-spec.js       | 19 +++++++-------
 2 files changed, 25 insertions(+), 20 deletions(-)

diff --git a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
index 182c01d6e1..a406ffa9b1 100644
--- a/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
+++ b/kbase-extension/static/kbase/js/widgets/narrative_core/kbaseNarrativeDownloadPanel.js
@@ -15,6 +15,7 @@ define([
 ], (Promise, KBWidget, $, Config, APIUtil, kbase_client_api, GenericClient, Jupyter) => {
     const STAGING_EXPORT_APP = 'kb_staging_exporter/export_to_staging';
     const JSON_EXPORT_APP = 'kb_staging_exporter/export_json_to_staging';
+    const CSS_BASE = 'kb-download-panel';
 
     return KBWidget({
         name: 'kbaseNarrativeDownloadPanel',
@@ -92,19 +93,19 @@ define([
         },
 
         renderStructure: function () {
-            const $container = $('<div>').addClass('kb-download-panel');
-            const $label = $('<div>').addClass('kb-download-panel__label').append('Export as:');
-            const $buttons = $('<div>').addClass('kb-download-panel__buttons');
+            const $container = $('<div>').addClass(CSS_BASE);
+            const $label = $('<div>').addClass(`${CSS_BASE}__label`).append('Export as:');
+            const $buttons = $('<div>').addClass(`${CSS_BASE}__buttons`);
             $container.append($label).append($buttons);
 
             this.$elem.append($container);
-            this.$statusDiv = $('<div>').addClass('kb-download-panel__status');
+            this.$statusDiv = $('<div>').addClass(`${CSS_BASE}__status`);
             this.$elem.append(this.$statusDiv.hide());
         },
 
         renderDownloadButtons: function () {
             const downloaders = this.prepareDownloaders(this.type);
-            const $btnPanel = this.$elem.find('.kb-download-panel__buttons');
+            const $btnPanel = this.$elem.find(`.${CSS_BASE}__buttons`);
             downloaders.forEach((dlInfo) => {
                 if (dlInfo.name.toLocaleLowerCase() === 'staging') {
                     $btnPanel.append(
@@ -259,7 +260,7 @@ define([
         },
 
         showMessage: function (msg) {
-            this.$statusDiv.empty().append(msg);
+            this.$statusDiv.empty().append(msg).show();
         },
 
         showError: function (error) {
@@ -272,11 +273,14 @@ define([
             }
             // error is final state, so reactivate!
             this.$elem.find('.kb-data-list-btn').prop('disabled', false);
-            this.$statusDiv.empty().append(
-                $('<span>')
-                    .addClass('kb-download-panel__status_error')
-                    .append('Error: ' + error)
-            );
+            this.$statusDiv
+                .empty()
+                .append(
+                    $('<span>')
+                        .addClass(`${CSS_BASE}__status_error`)
+                        .append('Error: ' + error)
+                )
+                .show();
         },
 
         stopTimer: function () {
diff --git a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
index cc97690f65..8c0f1f7bd6 100644
--- a/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
+++ b/test/unit/spec/narrative_core/kbaseNarrativeDownloadPanel-spec.js
@@ -8,6 +8,7 @@ define([
 ], ($, kbaseNarrativeDownloadPanel, Jupyter, Mocks, TestUtil, Config) => {
     const JSON_EXPORT_APP = 'kb_staging_exporter/export_json_to_staging';
     const STAGING_EXPORT_APP = 'kb_staging_exporter/export_to_staging';
+    const CSS_BASE = 'kb-download-panel';
 
     describe('The kbaseNarrativeDownloadPanel widget', () => {
         let $div = null;
@@ -124,7 +125,7 @@ define([
             });
 
             await initDownloadPanel(null, {});
-            const $status = $div.find('.kb-download-status');
+            const $status = $div.find(`.${CSS_BASE}__status`);
             expect($status.text()).toContain('Error: an error happened');
         });
 
@@ -236,14 +237,14 @@ define([
             await TestUtil.waitForElementState(
                 $div[0],
                 () => {
-                    const text = $div[0].querySelector('.kb-download-status').textContent || '';
+                    const text = $div[0].querySelector(`.${CSS_BASE}__status`).textContent || '';
                     return text.endsWith(errorMsg);
                 },
                 () => {
                     exportBtns[0].click();
                 }
             );
-            expect($div[0].querySelector('.kb-download-status').textContent).toContain(errorMsg);
+            expect($div[0].querySelector(`.${CSS_BASE}__status`).textContent).toContain(errorMsg);
             expect(widget.timer).toBeNull();
         });
 
@@ -323,22 +324,22 @@ define([
             await TestUtil.waitForElementState(
                 $div[0],
                 () => {
-                    const text = $div[0].querySelector('.kb-download-status').textContent || '';
+                    const text = $div[0].querySelector(`.${CSS_BASE}__status`).textContent || '';
                     return text.endsWith('some log');
                 },
                 () => {
                     exportBtns[0].click();
                 }
             );
-            expect($div[0].querySelector('.kb-download-status').textContent).toContain('some log');
+            expect($div[0].querySelector(`.${CSS_BASE}__status`).textContent).toContain('some log');
             expect(widget.timer).not.toBeNull();
 
             await TestUtil.waitForElementState($div[0], () => {
-                const text = $div[0].querySelector('.kb-download-status').textContent;
+                const text = $div[0].querySelector(`.${CSS_BASE}__status`).textContent;
                 return text === '';
             });
 
-            expect($div[0].querySelector('.kb-download-status').textContent).toBe('');
+            expect($div[0].querySelector(`.${CSS_BASE}__status`).textContent).toBe('');
             expect(widget.timer).toBeNull();
         });
 
@@ -383,14 +384,14 @@ define([
             await TestUtil.waitForElementState(
                 $div[0],
                 () => {
-                    const text = $div[0].querySelector('.kb-download-status').textContent || '';
+                    const text = $div[0].querySelector(`.${CSS_BASE}__status`).textContent || '';
                     return text.endsWith(errorMsg);
                 },
                 () => {
                     exportBtns[0].click();
                 }
             );
-            expect($div[0].querySelector('.kb-download-status').textContent).toContain(errorMsg);
+            expect($div[0].querySelector(`.${CSS_BASE}__status`).textContent).toContain(errorMsg);
             expect(widget.timer).toBeNull();
         });
 

From 5bbd4d7645c5b1e2c6fba82b74ddfbef67143cd9 Mon Sep 17 00:00:00 2001
From: Bill Riehl <wjriehl@lbl.gov>
Date: Thu, 25 Jul 2024 12:33:41 -0400
Subject: [PATCH 24/24] bump version to 5.4.0

---
 RELEASE_NOTES.md                   |  9 +++++++++
 package-lock.json                  | 10 +++++-----
 package.json                       |  2 +-
 src/biokbase/narrative/__init__.py |  2 +-
 src/config.json                    |  2 +-
 src/config.json.templ              |  2 +-
 6 files changed, 18 insertions(+), 9 deletions(-)

diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md
index e99c409af0..390e900ccf 100644
--- a/RELEASE_NOTES.md
+++ b/RELEASE_NOTES.md
@@ -4,6 +4,15 @@ The Narrative Interface allows users to craft KBase Narratives using a combinati
 
 This is built on the Jupyter Notebook v6.5.6 and IPython 8.25.0 (more notes will follow).
 
+## Version 5.4.0
+-   UIP-43
+    -   Change Narrative JSON downloads to use a download-to-staging app.
+    -   Add an optional "wildcard" field to app cells that can be used to allow any data object as an app input.
+    -   Add a text-only output field for app cells to optionally use.
+-   UIP-44 - Convert data object transform-and-download URLs to use the Blobstore endpoint instead of the Data Import Export service
+-   UIP-45 - Convert the report object viewer to use the Blobstore endpoint instead of the Data Import Export service
+-   Remove last references to the Data Import Export service so we can lay it to rest in KBase.
+
 ## Version 5.3.0
 
 -   PTV-1845 - kbaseTabs now shows another tab after a closable tab is closed;
diff --git a/package-lock.json b/package-lock.json
index f4f975d0a0..ee36c24f21 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -1,12 +1,12 @@
 {
     "name": "kbase-narrative-core",
-    "version": "5.3.0",
+    "version": "5.4.0",
     "lockfileVersion": 3,
     "requires": true,
     "packages": {
         "": {
             "name": "kbase-narrative-core",
-            "version": "5.3.0",
+            "version": "5.4.0",
             "dependencies": {
                 "bluebird": "3.7.2",
                 "bootstrap": "3.4.1",
@@ -3443,9 +3443,9 @@
             }
         },
         "node_modules/caniuse-lite": {
-            "version": "1.0.30001642",
-            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001642.tgz",
-            "integrity": "sha512-3XQ0DoRgLijXJErLSl+bLnJ+Et4KqV1PY6JJBGAFlsNsz31zeAIncyeZfLCabHK/jtSh+671RM9YMldxjUPZtA==",
+            "version": "1.0.30001643",
+            "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001643.tgz",
+            "integrity": "sha512-ERgWGNleEilSrHM6iUz/zJNSQTP8Mr21wDWpdgvRwcTXGAq6jMtOUPP4dqFPTdKqZ2wKTdtB+uucZ3MRpAUSmg==",
             "dev": true,
             "funding": [
                 {
diff --git a/package.json b/package.json
index cfacb4f11c..dab50166f6 100644
--- a/package.json
+++ b/package.json
@@ -1,7 +1,7 @@
 {
     "name": "kbase-narrative-core",
     "description": "Core components for the KBase Narrative Interface",
-    "version": "5.3.0",
+    "version": "5.4.0",
     "private": true,
     "repository": "github.com/kbase/narrative",
     "engines": {
diff --git a/src/biokbase/narrative/__init__.py b/src/biokbase/narrative/__init__.py
index 0f87cf3e88..0655b4df1a 100644
--- a/src/biokbase/narrative/__init__.py
+++ b/src/biokbase/narrative/__init__.py
@@ -1,5 +1,5 @@
 __all__ = ["magics", "common", "handlers", "contents", "services", "widgetmanager"]
-__version__ = "5.3.0"
+__version__ = "5.4.0"
 
 
 def version():
diff --git a/src/config.json b/src/config.json
index 8c78983859..11f7c9173b 100644
--- a/src/config.json
+++ b/src/config.json
@@ -391,5 +391,5 @@
         "globus_upload_url": "https://app.globus.org/file-manager?destination_id=c3c0a65f-5827-4834-b6c9-388b0b19953a"
     },
     "use_local_widgets": true,
-    "version": "5.3.0"
+    "version": "5.4.0"
 }
diff --git a/src/config.json.templ b/src/config.json.templ
index 37fc87adc0..d8aa3181e9 100644
--- a/src/config.json.templ
+++ b/src/config.json.templ
@@ -391,5 +391,5 @@
         "globus_upload_url": "https://app.globus.org/file-manager?destination_id=c3c0a65f-5827-4834-b6c9-388b0b19953a"
     },
     "use_local_widgets": true,
-    "version": "5.3.0"
+    "version": "5.4.0"
 }