KBase Collections Release Notes

0.1.3

Added BBMap and BUSCO tool to the CDM pipeline.
Included metadata file generation after each tool's execution.
Updated Python library dependencies to the latest versions.
Standardized thread management logic across all tools.
Pass job_id to the tool container and remove node_id.
Converted Data IDs to string format to ensure proper comparison with associated folder names
Fix kbase_id formate for biolog parser script
Added a guide for process from KBase Genome to Collections.
The task generator now asks for confirmation before submitting a job.

0.1.2

Fixed a bug that caused requests with filters to fail for filter keys containing colons.
Adds eggNOG mapper as an experimental tool in the pipeline. It currently does not integrate into the collections pipeline proper.
Pipeline tools now have the number of threads to use for tool invocations in the argument list.
The --create_assembly_only CLI flag was removed from the workspace uploader.

0.1.1

Fixed a bug in the service manager script that would cause it to fail if the service had never been started.
Added functionality to upload Genome objects to the workspace using workspace_uploader.py.

0.1.0

Initial release

0.1.0-prototype1

Initial prototype release