diff --git a/Pipfile b/Pipfile index 1dd77bb..36690de 100644 --- a/Pipfile +++ b/Pipfile @@ -5,29 +5,30 @@ name = "pypi" [packages] jupyterlab= "==4.2.5" -jupyterhub = "==5.1.0" -jupyterhub-nativeauthenticator = "==1.2.0" +jupyterhub = "==5.2.0" +jupyterhub-nativeauthenticator = "==1.3.0" dockerspawner = "==13.0.0" jupyterlab_favorites = "==3.2.2" +sidecar = "==0.7.0" json5 = "==0.9.25" pycurl = "==7.45.3" -pyspark= "==3.5.2" -boto3 = "==1.35.16" -minio = "==7.2.8" +pyspark= "==3.5.3" +boto3 = "==1.35.35" +minio = "==7.2.9" delta-spark = "==3.2.0" # should match JAR version (DELTA_SPARK_VER) specified in the Dockerfile -pandas = "==2.2.2" +pandas = "==2.2.3" pyarrow = "==17.0.0" -itables = "==2.1.5" +itables = "==2.2.2" PyMySQL = "==1.1.1" -urllib3 = "==2.2.2" +urllib3 = "==2.2.3" jupyterlab-git = "==0.50.1" cdm-jupyterlab-brand-extension = {file = "https://github.com/kbaseincubator/cdm_jupyterlab_brand_extension/raw/main/dist/cdm_jupyterlab_brand_extension-0.1.0-py3-none-any.whl"} # Frequently utilized scientific libraries by the science team -plotly = "==5.24.0" +plotly = "==5.24.1" tqdm = "==4.66.5" ipywidgets = "==8.1.5" -pygraphviz = "==1.13" +pygraphviz = "==1.14" catboost = "==1.2.5" scipy = "==1.14.1" scikit-learn = "==1.5.1" @@ -35,18 +36,18 @@ biopython = "==1.84" seaborn = "==0.13.2" geopandas = "==1.0.1" contextily = "==1.6.2" -dill = "==0.3.8" +dill = "==0.3.9" folium = "==0.17.0" geopy = "==2.4.1" -pygeohydro = "==0.17.0" -pynhd = "==0.17.0" -numpy = "==2.1.1" +pygeohydro = "==0.18.0" +pynhd = "==0.18.0" +numpy = "==2.1.2" [dev-packages] pytest = "==8.3.3" coverage = "==7.6.1" pytest-cov = "==5.0.0" -ipython = "==8.27.0" +ipython = "==8.28.0" [requires] python_version = "3.11" diff --git a/Pipfile.lock b/Pipfile.lock index bd87069..367d2ec 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "87bce6d131e41cff7c637826a1929b68137d9fbb5641a0f31609041e26702034" + "sha256": "9b74247baefd0ddeb7a26b20ef15e36b8a9381ccb079313b3db6f00b92bfd977" }, "pipfile-spec": 6, "requires": { @@ -33,119 +33,119 @@ }, "aiohappyeyeballs": { "hashes": [ - "sha256:4ca893e6c5c1f5bf3888b04cb5a3bee24995398efef6e0b9f747b5e89d84fd74", - "sha256:8522691d9a154ba1145b157d6d5c15e5c692527ce6a53c5e5f9876977f6dab2f" + "sha256:75cf88a15106a5002a8eb1dab212525c00d1f4c0fa96e551c9fbe6f09a621586", + "sha256:8a7a83727b2756f394ab2895ea0765a0a8c475e3c71e98d43d76f22b4b435572" ], "markers": "python_version >= '3.8'", - "version": "==2.4.2" + "version": "==2.4.3" }, "aiohttp": { "extras": [ "speedups" ], "hashes": [ - "sha256:02108326574ff60267b7b35b17ac5c0bbd0008ccb942ce4c48b657bb90f0b8aa", - "sha256:029a019627b37fa9eac5c75cc54a6bb722c4ebbf5a54d8c8c0fb4dd8facf2702", - "sha256:03fa40d1450ee5196e843315ddf74a51afc7e83d489dbfc380eecefea74158b1", - "sha256:0749c4d5a08a802dd66ecdf59b2df4d76b900004017468a7bb736c3b5a3dd902", - "sha256:0754690a3a26e819173a34093798c155bafb21c3c640bff13be1afa1e9d421f9", - 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