From fd96615feced808dbb318038a296d2bc53f96e73 Mon Sep 17 00:00:00 2001
From: Tianhao-Gu <tgu@anl.gov>
Date: Sun, 29 Sep 2024 22:47:07 -0500
Subject: [PATCH 1/6] add favorite feature

---
 Pipfile                                       |    2 +
 Pipfile.lock                                  | 1045 +++++++++--------
 .../custom_docker_spawner.py                  |   51 +-
 3 files changed, 576 insertions(+), 522 deletions(-)

diff --git a/Pipfile b/Pipfile
index fa9da1f..1dd77bb 100644
--- a/Pipfile
+++ b/Pipfile
@@ -8,6 +8,8 @@ jupyterlab= "==4.2.5"
 jupyterhub = "==5.1.0"
 jupyterhub-nativeauthenticator = "==1.2.0"
 dockerspawner = "==13.0.0"
+jupyterlab_favorites = "==3.2.2"
+json5 = "==0.9.25"
 pycurl = "==7.45.3"
 pyspark= "==3.5.2"
 boto3 = "==1.35.16"
diff --git a/Pipfile.lock b/Pipfile.lock
index 5030071..bd87069 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "9476c0072ab3450c75759bc0506d756322fc4e0fbcc3e0f8dd4ba2b106452758"
+            "sha256": "87bce6d131e41cff7c637826a1929b68137d9fbb5641a0f31609041e26702034"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -33,111 +33,111 @@
         },
         "aiohappyeyeballs": {
             "hashes": [
-                "sha256:55a1714f084e63d49639800f95716da97a1f173d46a16dfcfda0016abb93b6b2",
-                "sha256:7ce92076e249169a13c2f49320d1967425eaf1f407522d707d59cac7628d62bd"
+                "sha256:4ca893e6c5c1f5bf3888b04cb5a3bee24995398efef6e0b9f747b5e89d84fd74",
+                "sha256:8522691d9a154ba1145b157d6d5c15e5c692527ce6a53c5e5f9876977f6dab2f"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2.4.0"
+            "version": "==2.4.2"
         },
         "aiohttp": {
             "extras": [
                 "speedups"
             ],
             "hashes": [
-                "sha256:02594361128f780eecc2a29939d9dfc870e17b45178a867bf61a11b2a4367277",
-                "sha256:03f2645adbe17f274444953bdea69f8327e9d278d961d85657cb0d06864814c1",
-                "sha256:074d1bff0163e107e97bd48cad9f928fa5a3eb4b9d33366137ffce08a63e37fe",
-                "sha256:0912b8a8fadeb32ff67a3ed44249448c20148397c1ed905d5dac185b4ca547bb",
-                "sha256:0d277cfb304118079e7044aad0b76685d30ecb86f83a0711fc5fb257ffe832ca",
-                "sha256:0d93400c18596b7dc4794d48a63fb361b01a0d8eb39f28800dc900c8fbdaca91",
-                "sha256:123dd5b16b75b2962d0fff566effb7a065e33cd4538c1692fb31c3bda2bfb972",
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@@ -165,11 +165,11 @@
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@@ -181,11 +181,11 @@
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@@ -255,11 +255,11 @@
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@@ -369,19 +369,19 @@
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@@ -504,11 +504,11 @@
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@@ -1363,19 +1374,19 @@
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@@ -1385,13 +1396,6 @@
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@@ -1478,6 +1482,7 @@
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             "version": "==0.9.25"
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@@ -1509,11 +1514,11 @@
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@@ -1589,6 +1594,15 @@
             "markers": "python_version >= '3.8'",
             "version": "==4.2.5"
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@@ -2476,11 +2490,11 @@
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@@ -2493,19 +2507,19 @@
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@@ -2742,106 +2756,106 @@
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+                "sha256:e3b4293f02129cc2f5068f3687ef294846a79c9d19fabaa9bfdfeeebae11c001",
+                "sha256:e480a12cec58009eeaeee7f48728dc8f629f8e0f280d84957d42c361969d84da",
+                "sha256:e4dddf99a853b3f60f3ce6363fb1ad94606113743cf653f116a38edd839a4461",
+                "sha256:e5462756fb34c884ca9d4875b6d2ec80957a767123151c467c97a9b423617048",
+                "sha256:e557e2681b47a0ecfdfbea44743b3184d94d31d5ce0e4b13ff64ce227a40f86e",
+                "sha256:ebb2236f8098205f59774a28e25a84601a4beb3e974157d418ee6c470d73e0dc",
+                "sha256:f3ef76df654f3547dcb76ba550f9ca59826588eecc6bd7df16937c620df32060",
+                "sha256:f603216d62e9680bfac7fb168ef9673fd98abbb50c43e73d97615dfa1afebf57",
+                "sha256:f997004ff530b5381290e82b212a93bd420fefe5a605872dc16fc7e4a7f4251e",
+                "sha256:fda4404bbb6f91e327827f4483d52fe24f02f92de91217954cf51b1cb9ee9c41",
+                "sha256:fe6946c3cbcfbed67c5e50dae49baff82ad054aaa10ff7a4db8dfac646b7b479"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.11.1"
+            "version": "==1.13.0"
         },
         "zipp": {
             "hashes": [
@@ -4155,11 +4158,11 @@
         },
         "prompt-toolkit": {
             "hashes": [
-                "sha256:0d7bfa67001d5e39d02c224b663abc33687405033a8c422d0d675a5a13361d10",
-                "sha256:1e1b29cb58080b1e69f207c893a1a7bf16d127a5c30c9d17a25a5d77792e5360"
+                "sha256:d6623ab0477a80df74e646bdbc93621143f5caf104206aa29294d53de1a03d90",
+                "sha256:f49a827f90062e411f1ce1f854f2aedb3c23353244f8108b89283587397ac10e"
             ],
             "markers": "python_full_version >= '3.7.0'",
-            "version": "==3.0.47"
+            "version": "==3.0.48"
         },
         "ptyprocess": {
             "hashes": [
diff --git a/src/jupyterhub_config/custom_docker_spawner.py b/src/jupyterhub_config/custom_docker_spawner.py
index 4a5337a..ab4fc83 100644
--- a/src/jupyterhub_config/custom_docker_spawner.py
+++ b/src/jupyterhub_config/custom_docker_spawner.py
@@ -2,6 +2,7 @@
 import venv
 from pathlib import Path
 
+import json5
 from dockerspawner import DockerSpawner
 
 
@@ -32,6 +33,10 @@ def start(self):
         # Ensure the user's volume is correctly mounted in the container
         self._ensure_user_volume()
 
+        # Add the user's home directory to JupyterLab favorites
+        # TODO: include shared group directories in favorites
+        self._add_favorite_dir(user_dir)
+
         return super().start()
 
     def _ensure_user_directory(self, user_dir: Path, username: str):
@@ -167,5 +172,49 @@ def _ensure_user_volume(self):
             access_mode = 'rw' if self._is_rw_minio_user() else 'ro'
             self.volumes.update({
                 f'{mount_base_dir}/{hive_metastore_dir}': {'bind': f'{hive_metastore_dir}', 'mode': access_mode},
-                f'{mount_base_dir}/{user_home_dir}/{self.user.name}': f'{user_home_dir}/{self.user.name}'  # User specific home directory
+                # User specific home directory
+                f'{mount_base_dir}/{user_home_dir}/{self.user.name}': f'{user_home_dir}/{self.user.name}'
             })
+
+    def _add_favorite_dir(self, user_dir: Path, favorites: list[Path] = None):
+        """
+        Configure the JupyterLab favorites for the user.
+        """
+        self.log.info('Configuring JupyterLab favorites for user')
+
+        if not favorites:
+            favorites = [user_dir]
+
+        jupyterlab_favorites_path = user_dir / '.jupyter' / 'lab' / 'user-settings' / '@jlab-enhanced' / 'favorites' / 'favorites.jupyterlab-settings'
+
+        favorites_dir = jupyterlab_favorites_path.parent
+        if not favorites_dir.exists():
+            favorites_dir.mkdir(parents=True, exist_ok=True)
+
+        if jupyterlab_favorites_path.exists():
+            with open(jupyterlab_favorites_path, 'r') as f:
+                exist_favorites = json5.load(f)
+        else:
+            exist_favorites = {"favorites": []}
+
+        existing_fav_set = {(fav["root"], fav["path"]) for fav in exist_favorites.get('favorites', [])}
+
+        for fav in favorites:
+
+            if not fav.is_dir():
+                raise ValueError(f"Favorite {fav} is not a directory or does not exist")
+
+            root_str = str(fav)
+            path_str = ""
+
+            if (root_str, path_str) not in existing_fav_set:
+                exist_favorites["favorites"].append({
+                    "root": root_str,
+                    "path": path_str,
+                    "contentType": "directory",
+                    "iconLabel": "ui-components:folder",
+                    "name": "$HOME" if root_str == str(user_dir) else fav.name,
+                })
+
+        with open(jupyterlab_favorites_path, 'w') as f:
+            json5.dump(exist_favorites, f, indent=4)

From 138ea25f3aedfe9ab040f15a7b670dfd48b836a1 Mon Sep 17 00:00:00 2001
From: Tianhao-Gu <tgu@anl.gov>
Date: Sun, 29 Sep 2024 23:12:34 -0500
Subject: [PATCH 2/6] add some comments

---
 src/jupyterhub_config/custom_docker_spawner.py | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/src/jupyterhub_config/custom_docker_spawner.py b/src/jupyterhub_config/custom_docker_spawner.py
index ab4fc83..f896012 100644
--- a/src/jupyterhub_config/custom_docker_spawner.py
+++ b/src/jupyterhub_config/custom_docker_spawner.py
@@ -185,14 +185,20 @@ def _add_favorite_dir(self, user_dir: Path, favorites: list[Path] = None):
         if not favorites:
             favorites = [user_dir]
 
-        jupyterlab_favorites_path = user_dir / '.jupyter' / 'lab' / 'user-settings' / '@jlab-enhanced' / 'favorites' / 'favorites.jupyterlab-settings'
+        # Ensure the user's home directory is always in the favorites
+        if user_dir not in favorites:
+            favorites.append(user_dir)
 
+        # Path to the JupyterLab favorites configuration file
+        jupyterlab_favorites_path = user_dir / '.jupyter' / 'lab' / 'user-settings' / '@jlab-enhanced' / 'favorites' / 'favorites.jupyterlab-settings'
         favorites_dir = jupyterlab_favorites_path.parent
+
         if not favorites_dir.exists():
             favorites_dir.mkdir(parents=True, exist_ok=True)
 
         if jupyterlab_favorites_path.exists():
             with open(jupyterlab_favorites_path, 'r') as f:
+                # JupyterHub writes JSON comments in the file
                 exist_favorites = json5.load(f)
         else:
             exist_favorites = {"favorites": []}

From 0d597df116e4753dff5b3823814c82ce88d95d1c Mon Sep 17 00:00:00 2001
From: Tianhao-Gu <tgu@anl.gov>
Date: Mon, 30 Sep 2024 13:10:21 -0500
Subject: [PATCH 3/6] address comments

---
 src/jupyterhub_config/custom_docker_spawner.py | 11 +++--------
 1 file changed, 3 insertions(+), 8 deletions(-)

diff --git a/src/jupyterhub_config/custom_docker_spawner.py b/src/jupyterhub_config/custom_docker_spawner.py
index f896012..c4e322a 100644
--- a/src/jupyterhub_config/custom_docker_spawner.py
+++ b/src/jupyterhub_config/custom_docker_spawner.py
@@ -176,25 +176,20 @@ def _ensure_user_volume(self):
                 f'{mount_base_dir}/{user_home_dir}/{self.user.name}': f'{user_home_dir}/{self.user.name}'
             })
 
-    def _add_favorite_dir(self, user_dir: Path, favorites: list[Path] = None):
+    def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
         """
         Configure the JupyterLab favorites for the user.
         """
         self.log.info('Configuring JupyterLab favorites for user')
 
-        if not favorites:
-            favorites = [user_dir]
-
         # Ensure the user's home directory is always in the favorites
-        if user_dir not in favorites:
-            favorites.append(user_dir)
+        favorites = {user_dir} if not favorites else favorites | {user_dir}
 
         # Path to the JupyterLab favorites configuration file
         jupyterlab_favorites_path = user_dir / '.jupyter' / 'lab' / 'user-settings' / '@jlab-enhanced' / 'favorites' / 'favorites.jupyterlab-settings'
         favorites_dir = jupyterlab_favorites_path.parent
 
-        if not favorites_dir.exists():
-            favorites_dir.mkdir(parents=True, exist_ok=True)
+        favorites_dir.mkdir(parents=True, exist_ok=True)
 
         if jupyterlab_favorites_path.exists():
             with open(jupyterlab_favorites_path, 'r') as f:

From 0e6b7b38e2ffed37665aafc345369219c46dfc0a Mon Sep 17 00:00:00 2001
From: Tianhao-Gu <tgu@anl.gov>
Date: Mon, 30 Sep 2024 16:07:35 -0500
Subject: [PATCH 4/6] add lock

---
 .../custom_docker_spawner.py                  | 50 +++++++++++--------
 1 file changed, 28 insertions(+), 22 deletions(-)

diff --git a/src/jupyterhub_config/custom_docker_spawner.py b/src/jupyterhub_config/custom_docker_spawner.py
index c4e322a..ad936c3 100644
--- a/src/jupyterhub_config/custom_docker_spawner.py
+++ b/src/jupyterhub_config/custom_docker_spawner.py
@@ -4,6 +4,7 @@
 
 import json5
 from dockerspawner import DockerSpawner
+from filelock import FileLock
 
 
 class CustomDockerSpawner(DockerSpawner):
@@ -191,31 +192,36 @@ def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
 
         favorites_dir.mkdir(parents=True, exist_ok=True)
 
-        if jupyterlab_favorites_path.exists():
-            with open(jupyterlab_favorites_path, 'r') as f:
-                # JupyterHub writes JSON comments in the file
-                exist_favorites = json5.load(f)
-        else:
-            exist_favorites = {"favorites": []}
+        # Create a file lock to prevent race conditions
+        lock_path = str(jupyterlab_favorites_path) + ".lock"
+        lock = FileLock(lock_path)
+
+        with lock:
+            if jupyterlab_favorites_path.exists():
+                with open(jupyterlab_favorites_path, 'r') as f:
+                    # JupyterHub writes JSON comments in the file
+                    exist_favorites = json5.load(f)
+            else:
+                exist_favorites = {"favorites": []}
 
-        existing_fav_set = {(fav["root"], fav["path"]) for fav in exist_favorites.get('favorites', [])}
+            existing_fav_set = {(fav["root"], fav["path"]) for fav in exist_favorites.get('favorites', [])}
 
-        for fav in favorites:
+            for fav in favorites:
 
-            if not fav.is_dir():
-                raise ValueError(f"Favorite {fav} is not a directory or does not exist")
+                if not fav.is_dir():
+                    raise ValueError(f"Favorite {fav} is not a directory or does not exist")
 
-            root_str = str(fav)
-            path_str = ""
+                root_str = str(fav)
+                path_str = ""
 
-            if (root_str, path_str) not in existing_fav_set:
-                exist_favorites["favorites"].append({
-                    "root": root_str,
-                    "path": path_str,
-                    "contentType": "directory",
-                    "iconLabel": "ui-components:folder",
-                    "name": "$HOME" if root_str == str(user_dir) else fav.name,
-                })
+                if (root_str, path_str) not in existing_fav_set:
+                    exist_favorites["favorites"].append({
+                        "root": root_str,
+                        "path": path_str,
+                        "contentType": "directory",
+                        "iconLabel": "ui-components:folder",
+                        "name": "$HOME" if root_str == str(user_dir) else fav.name,
+                    })
 
-        with open(jupyterlab_favorites_path, 'w') as f:
-            json5.dump(exist_favorites, f, indent=4)
+            with open(jupyterlab_favorites_path, 'w') as f:
+                json5.dump(exist_favorites, f, indent=4)

From 4f70866a24303aed8facafbe055220b6f6421368 Mon Sep 17 00:00:00 2001
From: Tianhao-Gu <tgu@anl.gov>
Date: Tue, 1 Oct 2024 14:33:51 -0500
Subject: [PATCH 5/6] add shared dir to user's favorite list

---
 Dockerfile                                     |  5 +++++
 src/jupyterhub_config/custom_docker_spawner.py | 18 +++++++++++-------
 src/jupyterhub_config/hub_singleuser.py        |  2 +-
 3 files changed, 17 insertions(+), 8 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index c9ded25..3009f22 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -98,6 +98,11 @@ ENV CDM_SHARED_DIR=/cdm_shared_workspace
 RUN mkdir -p ${CDM_SHARED_DIR} && chmod -R 777 ${CDM_SHARED_DIR}
 RUN chown -R spark_user:spark $CDM_SHARED_DIR
 
+# TODO: Config through a config file or DB as the number of groups increases.
+ENV KBASE_GROUP_SHARED_DIR=$CDM_SHARED_DIR/kbase_group_shared
+RUN mkdir -p ${KBASE_GROUP_SHARED_DIR} && chmod -R 777 ${KBASE_GROUP_SHARED_DIR}
+RUN chown -R spark_user:spark $KBASE_GROUP_SHARED_DIR
+
 # Set a directory for hosting Hive metastore files - defined in config/hive-site-template.xml
 ENV HIVE_METASTORE_DIR=$CDM_SHARED_DIR/hive_metastore
 RUN mkdir -p ${HIVE_METASTORE_DIR}
diff --git a/src/jupyterhub_config/custom_docker_spawner.py b/src/jupyterhub_config/custom_docker_spawner.py
index ad936c3..8256bed 100644
--- a/src/jupyterhub_config/custom_docker_spawner.py
+++ b/src/jupyterhub_config/custom_docker_spawner.py
@@ -35,8 +35,7 @@ def start(self):
         self._ensure_user_volume()
 
         # Add the user's home directory to JupyterLab favorites
-        # TODO: include shared group directories in favorites
-        self._add_favorite_dir(user_dir)
+        self._add_favorite_dir(user_dir, favorites={Path(os.environ['KBASE_GROUP_SHARED_DIR'])})
 
         return super().start()
 
@@ -138,7 +137,9 @@ def _configure_notebook_dir(self, username: str, user_dir: Path):
             self.notebook_dir = str('/')
         else:
             self.log.info(f'Non-admin user detected: {username}. Setting up user-specific workspace.')
-            self.notebook_dir = str(user_dir)
+            # TODO: It appears that notebook_dir must be the parent of the favorites directory - investigate if it's possible to set notebook_dir to user_dir
+            # self.notebook_dir = str(user_dir)
+            self.notebook_dir = str('/')
 
     def _is_rw_minio_user(self):
         """
@@ -160,6 +161,7 @@ def _ensure_user_volume(self):
 
         cdm_shared_dir = Path(os.environ['CDM_SHARED_DIR'])  # Legacy data volume from JupyterLab
         hive_metastore_dir = Path(os.environ['HIVE_METASTORE_DIR'])  # within cdm_shared_dir
+        kbase_shared_dir = Path(os.environ['KBASE_GROUP_SHARED_DIR'])  # within cdm_shared_dir
 
         if self.user.admin:
             self.log.info(f'Admin user detected: {self.user.name}. Setting up admin mount points.')
@@ -174,7 +176,8 @@ def _ensure_user_volume(self):
             self.volumes.update({
                 f'{mount_base_dir}/{hive_metastore_dir}': {'bind': f'{hive_metastore_dir}', 'mode': access_mode},
                 # User specific home directory
-                f'{mount_base_dir}/{user_home_dir}/{self.user.name}': f'{user_home_dir}/{self.user.name}'
+                f'{mount_base_dir}/{user_home_dir}/{self.user.name}': f'{user_home_dir}/{self.user.name}',
+                f'{mount_base_dir}/{kbase_shared_dir}': f'{kbase_shared_dir}',
             })
 
     def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
@@ -211,8 +214,9 @@ def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
                 if not fav.is_dir():
                     raise ValueError(f"Favorite {fav} is not a directory or does not exist")
 
-                root_str = str(fav)
-                path_str = ""
+                # same approach used by NERSC JupyterHub
+                root_str = "/"
+                path_str = str(fav.relative_to(root_str))
 
                 if (root_str, path_str) not in existing_fav_set:
                     exist_favorites["favorites"].append({
@@ -220,7 +224,7 @@ def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
                         "path": path_str,
                         "contentType": "directory",
                         "iconLabel": "ui-components:folder",
-                        "name": "$HOME" if root_str == str(user_dir) else fav.name,
+                        "name": "$HOME" if str(fav) == str(user_dir) else fav.name,
                     })
 
             with open(jupyterlab_favorites_path, 'w') as f:
diff --git a/src/jupyterhub_config/hub_singleuser.py b/src/jupyterhub_config/hub_singleuser.py
index 5d97b1c..2f978c5 100644
--- a/src/jupyterhub_config/hub_singleuser.py
+++ b/src/jupyterhub_config/hub_singleuser.py
@@ -15,7 +15,7 @@ class SingleUserEnvManager:
 
     def __init__(self,
                  username,
-                 groupname: str = 'jupyterhub', ):
+                 groupname: str = 'kbase', ):
         """
         Initializes the environment manager for the specified user.
         :param username: The name of the user for whom the environment is set up.

From 30045a09352ecafadeca3111ae3e330ee99a94a2 Mon Sep 17 00:00:00 2001
From: Tianhao-Gu <tgu@anl.gov>
Date: Tue, 1 Oct 2024 14:35:54 -0500
Subject: [PATCH 6/6] forget to merge previous PR

---
 Dockerfile                                     |  5 -----
 src/jupyterhub_config/custom_docker_spawner.py | 18 +++++++-----------
 src/jupyterhub_config/hub_singleuser.py        |  2 +-
 3 files changed, 8 insertions(+), 17 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 3009f22..c9ded25 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -98,11 +98,6 @@ ENV CDM_SHARED_DIR=/cdm_shared_workspace
 RUN mkdir -p ${CDM_SHARED_DIR} && chmod -R 777 ${CDM_SHARED_DIR}
 RUN chown -R spark_user:spark $CDM_SHARED_DIR
 
-# TODO: Config through a config file or DB as the number of groups increases.
-ENV KBASE_GROUP_SHARED_DIR=$CDM_SHARED_DIR/kbase_group_shared
-RUN mkdir -p ${KBASE_GROUP_SHARED_DIR} && chmod -R 777 ${KBASE_GROUP_SHARED_DIR}
-RUN chown -R spark_user:spark $KBASE_GROUP_SHARED_DIR
-
 # Set a directory for hosting Hive metastore files - defined in config/hive-site-template.xml
 ENV HIVE_METASTORE_DIR=$CDM_SHARED_DIR/hive_metastore
 RUN mkdir -p ${HIVE_METASTORE_DIR}
diff --git a/src/jupyterhub_config/custom_docker_spawner.py b/src/jupyterhub_config/custom_docker_spawner.py
index 8256bed..ad936c3 100644
--- a/src/jupyterhub_config/custom_docker_spawner.py
+++ b/src/jupyterhub_config/custom_docker_spawner.py
@@ -35,7 +35,8 @@ def start(self):
         self._ensure_user_volume()
 
         # Add the user's home directory to JupyterLab favorites
-        self._add_favorite_dir(user_dir, favorites={Path(os.environ['KBASE_GROUP_SHARED_DIR'])})
+        # TODO: include shared group directories in favorites
+        self._add_favorite_dir(user_dir)
 
         return super().start()
 
@@ -137,9 +138,7 @@ def _configure_notebook_dir(self, username: str, user_dir: Path):
             self.notebook_dir = str('/')
         else:
             self.log.info(f'Non-admin user detected: {username}. Setting up user-specific workspace.')
-            # TODO: It appears that notebook_dir must be the parent of the favorites directory - investigate if it's possible to set notebook_dir to user_dir
-            # self.notebook_dir = str(user_dir)
-            self.notebook_dir = str('/')
+            self.notebook_dir = str(user_dir)
 
     def _is_rw_minio_user(self):
         """
@@ -161,7 +160,6 @@ def _ensure_user_volume(self):
 
         cdm_shared_dir = Path(os.environ['CDM_SHARED_DIR'])  # Legacy data volume from JupyterLab
         hive_metastore_dir = Path(os.environ['HIVE_METASTORE_DIR'])  # within cdm_shared_dir
-        kbase_shared_dir = Path(os.environ['KBASE_GROUP_SHARED_DIR'])  # within cdm_shared_dir
 
         if self.user.admin:
             self.log.info(f'Admin user detected: {self.user.name}. Setting up admin mount points.')
@@ -176,8 +174,7 @@ def _ensure_user_volume(self):
             self.volumes.update({
                 f'{mount_base_dir}/{hive_metastore_dir}': {'bind': f'{hive_metastore_dir}', 'mode': access_mode},
                 # User specific home directory
-                f'{mount_base_dir}/{user_home_dir}/{self.user.name}': f'{user_home_dir}/{self.user.name}',
-                f'{mount_base_dir}/{kbase_shared_dir}': f'{kbase_shared_dir}',
+                f'{mount_base_dir}/{user_home_dir}/{self.user.name}': f'{user_home_dir}/{self.user.name}'
             })
 
     def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
@@ -214,9 +211,8 @@ def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
                 if not fav.is_dir():
                     raise ValueError(f"Favorite {fav} is not a directory or does not exist")
 
-                # same approach used by NERSC JupyterHub
-                root_str = "/"
-                path_str = str(fav.relative_to(root_str))
+                root_str = str(fav)
+                path_str = ""
 
                 if (root_str, path_str) not in existing_fav_set:
                     exist_favorites["favorites"].append({
@@ -224,7 +220,7 @@ def _add_favorite_dir(self, user_dir: Path, favorites: set[Path] = None):
                         "path": path_str,
                         "contentType": "directory",
                         "iconLabel": "ui-components:folder",
-                        "name": "$HOME" if str(fav) == str(user_dir) else fav.name,
+                        "name": "$HOME" if root_str == str(user_dir) else fav.name,
                     })
 
             with open(jupyterlab_favorites_path, 'w') as f:
diff --git a/src/jupyterhub_config/hub_singleuser.py b/src/jupyterhub_config/hub_singleuser.py
index 2f978c5..5d97b1c 100644
--- a/src/jupyterhub_config/hub_singleuser.py
+++ b/src/jupyterhub_config/hub_singleuser.py
@@ -15,7 +15,7 @@ class SingleUserEnvManager:
 
     def __init__(self,
                  username,
-                 groupname: str = 'kbase', ):
+                 groupname: str = 'jupyterhub', ):
         """
         Initializes the environment manager for the specified user.
         :param username: The name of the user for whom the environment is set up.