diff --git a/Pipfile b/Pipfile
index a248a6a..db0251a 100644
--- a/Pipfile
+++ b/Pipfile
@@ -16,7 +16,6 @@ itables = "==2.1.4"
 PyMySQL = "==1.1.1"
 urllib3 = "==2.2.2"
 jupyterlab-git = "==0.50.1"
-jupyter-collaboration = "==2.1.2"
 cdm-jupyterlab-brand-extension = {file = "https://github.com/kbaseincubator/cdm_jupyterlab_brand_extension/raw/main/dist/cdm_jupyterlab_brand_extension-0.1.0-py3-none-any.whl"}
 plotly = "==5.23.0"
 tqdm = "==4.66.5"
diff --git a/Pipfile.lock b/Pipfile.lock
index e5fac9a..7692b68 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "76c7c39d82ddc8e6759f6241dc83c6251485134f95edd3086f7eb0f53bc40f24"
+            "sha256": "94e837d0fe782fbbde0ba549a34ca84131c044cf32474e9a66c75b4c1b2dd70e"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -133,11 +133,11 @@
         },
         "botocore": {
             "hashes": [
-                "sha256:bce42967d0f03b79cf25b2b6a36221fb2fb15f98e6fa4155b66b672ab192013b",
-                "sha256:e599cef6305e950a212f85adb86c1f4713d4b2678b3c2ec54df6b8e2dbe9ef2f"
+                "sha256:8378c6cfef2dee15eb7b3ebbb55ba9c1de959f231292039b81eb35b72c50ad59",
+                "sha256:93ef31b80b05758db4dd67e010348a05b9ff43f82839629b7ac334f2a454996e"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.35.1"
+            "version": "==1.35.6"
         },
         "cdm-jupyterlab-brand-extension": {
             "file": "https://github.com/kbaseincubator/cdm_jupyterlab_brand_extension/raw/main/dist/cdm_jupyterlab_brand_extension-0.1.0-py3-none-any.whl"
@@ -452,11 +452,11 @@
         },
         "idna": {
             "hashes": [
-                "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc",
-                "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"
+                "sha256:050b4e5baadcd44d760cedbd2b8e639f2ff89bbc7a5730fcc662954303377aac",
+                "sha256:d838c2c0ed6fced7693d5e8ab8e734d5f8fda53a039c0164afb0b82e771e3603"
             ],
-            "markers": "python_version >= '3.5'",
-            "version": "==3.7"
+            "markers": "python_version >= '3.6'",
+            "version": "==3.8"
         },
         "importlib-metadata": {
             "hashes": [
@@ -573,15 +573,6 @@
             "markers": "python_version >= '3.8'",
             "version": "==8.6.2"
         },
-        "jupyter-collaboration": {
-            "hashes": [
-                "sha256:5377afae40e08c3d422f2f400427633ebb0d878fe3e18a3412a4d35e63927380",
-                "sha256:b8b6cd633b336922e753855c683af928171137e5e6fc1e3bd6cf96f6a2626ec9"
-            ],
-            "index": "pypi",
-            "markers": "python_version >= '3.8'",
-            "version": "==2.1.2"
-        },
         "jupyter-core": {
             "hashes": [
                 "sha256:4f7315d2f6b4bcf2e3e7cb6e46772eba760ae459cd1f59d29eb57b0a01bd7409",
@@ -614,14 +605,6 @@
             "markers": "python_version >= '3.8'",
             "version": "==2.14.2"
         },
-        "jupyter-server-fileid": {
-            "hashes": [
-                "sha256:76a2fbcea6950968485dcd509c2d6ac417ca11e61ab1ad447a475f0878ca808f",
-                "sha256:ffb11460ca5f8567644f6120b25613fca8e3f3048b38d14c6e3fe1902f314a9b"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==0.9.2"
-        },
         "jupyter-server-mathjax": {
             "hashes": [
                 "sha256:416389dde2010df46d5fbbb7adb087a5607111070af65a1445391040f2babb5e",
@@ -638,14 +621,6 @@
             "markers": "python_version >= '3.8'",
             "version": "==0.5.3"
         },
-        "jupyter-ydoc": {
-            "hashes": [
-                "sha256:1dcbf13861b3678000d69af4ef38b49e3a12f8081ba851c680393c2e18bc4b84",
-                "sha256:4f0aa4e9624ab9328e6ebcc26df0a0a42017cf790267e52fbe38fb163f96d6b4"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==2.1.1"
-        },
         "jupyterlab": {
             "hashes": [
                 "sha256:343a979fb9582fd08c8511823e320703281cd072a0049bcdafdc7afeda7f2537",
@@ -682,11 +657,11 @@
         },
         "jupyterlab-widgets": {
             "hashes": [
-                "sha256:78287fd86d20744ace330a61625024cf5521e1c012a352ddc0a3cdc2348becd0",
-                "sha256:dd5ac679593c969af29c9bed054c24f26842baa51352114736756bc035deee27"
+                "sha256:a2966d385328c1942b683a8cd96b89b8dd82c8b8f81dda902bb2bc06d46f5bed",
+                "sha256:e3cda2c233ce144192f1e29914ad522b2f4c40e77214b0cc97377ca3d323db54"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==3.0.11"
+            "version": "==3.0.13"
         },
         "markupsafe": {
             "hashes": [
@@ -1088,87 +1063,6 @@
             "markers": "python_version >= '3.8'",
             "version": "==2.22"
         },
-        "pycrdt": {
-            "hashes": [
-                "sha256:00954ab6fb0e1ea31b1753e63f22aab8c6d2aa21e2cd4febd270d160bbfcdb30",
-                "sha256:058d136098d2bb64efee0ef089ad91602fee5ca024778a43f6545519c6c952b2",
-                "sha256:060ac5badb3ee279258247a8094b4949f397a2c7eb97c0641360b9b4bc015922",
-                "sha256:0845112757ec314fbc6280d47cf5080b7cb3cf10295a20f4c20487aefc67eea5",
-                "sha256:1762eab9182bb410554fcd0f7b615fc1d61b3aa5bbf1d38c0344dc8375b68a59",
-                "sha256:19531e3c41a247410693c870f9fffcdadcd72fc2c9143c397cba1c31b5da06f8",
-                "sha256:1a16d42dd0a78a7d0419dfcc3c0b5ad9da6e24ca6a25f5bc12a8701062784071",
-                "sha256:1cf96a6d56d057efe221d75eb1545e88089f296eca7be84b92357370157d5271",
-                "sha256:26254be13c11c0d0e18864e15fd49ec6fa73002762a5fcc02628ae9e7b38eede",
-                "sha256:29da24111959719b2d8d00ac85d9652a7ef95e72d4570b8f975dba21b761308b",
-                "sha256:2be71faf86396eef8300d00ba5c52f4e166d645195335b7aa7c11955f54ffda9",
-                "sha256:2c0335eddfc786b5b53f51f9f552a1171fe36adaa67c9579c616f231bfa9afb7",
-                "sha256:2fa86112b3470e11ec2ad6ffcbeb683e54d5aa476dd13390c97170c3bc6c5261",
-                "sha256:37973b270c439578da83a4ea5dd47a37b492957071f62b12795eb7f8da8c1c1b",
-                "sha256:37b2bbf9d6cec76075a1ee8d181bf5c998f539dc22b34871e56f5d26a6385c68",
-                "sha256:3a1bc9e57be4fb9fe2ef79f553f21ef121fd5b4e0df0fc6752007914ebabefb1",
-                "sha256:3b8c2101639f9bbdb429781b7382d81625ccd974fe52a321a70ecd7738e502f3",
-                "sha256:3bc101be635d534bc6f946bc79a08e258ea676fb74a5e107e44db0b33ffa64c5",
-                "sha256:40ea961dbfe1fd61d81c1760a19fe72629ced5be3ca58e0c8c2667e63b88d021",
-                "sha256:423c39c373b08a7748fd6f64ef45ee19c6b56f1c8f865bb3b23051939c82bf76",
-                "sha256:4952af99424880b27f95690bb4c9ab3322c05d7c9918b090f49ebed446dad89c",
-                "sha256:4e60e759bf64722743a78da9d94310edc2ba91008879b0c5b558de7bb605d8d1",
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-                "sha256:714c3e620587f650aa940476a40e6dd04f0fc8089adb15839e89c68934c42872",
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-                "sha256:7ccf5e9b8cc421f3a46291a2c5a3d411eca3b0ea1b074fa3701f74e8d3218045",
-                "sha256:7d0587f4600d431848f24d732f9ade59f7b00ad6b07a0a24c42221610c0715bc",
-                "sha256:81268c367eab53bfc21ccb0342694ff4e3494f682b12b015f6d615cc2c3ef05a",
-                "sha256:838f3bfe587561410afe53e07495a6a0256954fe42db56cc8432dbdd5687ace9",
-                "sha256:84fa417a98cbe7a0399a28f63b9574c3dd5e4f3fe4a125f09f2e343127e86c5c",
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-                "sha256:8b977e565c9d0e9e1085614d2b32b159f51a0c8cc6272ea230887bd3eb5b3cbb",
-                "sha256:8ca9af6c205519adf97322c2adaf36fa057262114d7e638ef30f65b789090f73",
-                "sha256:9444333ebd2cd919465c1223de1933af1619f7d63d9ada973e76e5143be672dc",
-                "sha256:94a702fa579c1e5b5d988f5bcfaa396dbbaa197f5eecfac1e323c5d9b85cf1f9",
-                "sha256:9852a70cf16bc7be4afd43e5a2d0e162e94d4527ac9f858ecdc62f278f9daa7d",
-                "sha256:998a2f9d590ade40b147fc645ac6388f393613fad9c6a34c7d89df61f7030597",
-                "sha256:9eafe7758c0b72932d86f90ee5c4f0bf84c50c3185c809b4dc1607e0ac9d4693",
-                "sha256:a1491e56b4b0e3ee75da4ed86c7c847e83aba016865b9e8889a633b95b350f07",
-                "sha256:a1c8cc970951a48cea06a6528dbbc43163ed02cef1b502d17581d8fb8e01a285",
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-                "sha256:c5a61d99e57d09f3dca4b747b16eef5e9727837e993f01b8be52fb4681f8bc78",
-                "sha256:c629b3cb41c6114814ea0e1979a957ea222e184b02193510357998fd9778b6e4",
-                "sha256:c7d2b9122f09557805bd783a2cf8f959752c9ad3e51cd90565381d0cfc3abf00",
-                "sha256:cb91185f599e0e9cee527083cfac2b29db6d62805a3755578e59c2b6b1753c56",
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-                "sha256:d0cb1bda14c763a8be23a993108628fb8a2d0b23064ca718b4e12913a8c58791",
-                "sha256:d91adba57e35b6f428375bd16b783c435b23f90a2d95764c06327cc72ec4e97d",
-                "sha256:dc0f6a5b533618833418138b7a6575dd6977e02e04ed013f40d841ac747abec2",
-                "sha256:dd0bde55c9805e133ea500dccd569ed8cb91d3f4a5e67c918f30c03e8103e94b",
-                "sha256:e0b8b4358256832f8801443b9e7cd11aadef37a8b4f538da065f3dfe8f0bbcee",
-                "sha256:e28561d8aa4e0820429ded033003dd6bff6fefb76cc922340efaf3abefa6aa3e",
-                "sha256:e97b3d8a6200860548178ee77cf0de12e7e468a89f4ae6adb71ac9b5a8d97d4b",
-                "sha256:ebd64ae5d43f7924edb5850bbc40ccebe3d0310bcf6d42713f0f6fa7139d5e94",
-                "sha256:f1281fe8e67dd57c3d265a3237b57f532523bc77d6708822ded47a7ffe85b7ac",
-                "sha256:f9091eabdeee918c7414d169f53479b21ecb309d684dbe69c079c5402df28927",
-                "sha256:f9576140724905ed455cdcee2b8f2dbcf00e8992a7d3e9543b96fad4145f2859"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==0.9.8"
-        },
-        "pycrdt-websocket": {
-            "hashes": [
-                "sha256:2e156fb57ca7034b71f946423ec64f256b2b07063914ee1d00984d7d3613ad18",
-                "sha256:383c58e5dddb393ac66246a67eceae5f6e76bffb426dbe02e0360dfc4a61101a"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==0.14.1"
-        },
         "pycryptodome": {
             "hashes": [
                 "sha256:06d6de87c19f967f03b4cf9b34e538ef46e99a337e9a61a77dbe44b2cbcf0690",
@@ -1245,7 +1139,7 @@
                 "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3",
                 "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
             "version": "==2.9.0.post0"
         },
         "python-json-logger": {
@@ -1324,118 +1218,118 @@
         },
         "pyzmq": {
             "hashes": [
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+                "sha256:fc4f7a173a5609631bb0c42c23d12c49df3966f89f496a51d3eb0ec81f4519d6",
+                "sha256:fdb5b3e311d4d4b0eb8b3e8b4d1b0a512713ad7e6a68791d0923d1aec433d919"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==26.1.1"
+            "version": "==26.2.0"
         },
         "referencing": {
             "hashes": [
@@ -1596,18 +1490,18 @@
         },
         "setuptools": {
             "hashes": [
-                "sha256:3c08705fadfc8c7c445cf4d98078f0fafb9225775b2b4e8447e40348f82597c0",
-                "sha256:f2bfcce7ae1784d90b04c57c2802e8649e1976530bb25dc72c2b078d3ecf4864"
+                "sha256:b208925fcb9f7af924ed2dc04708ea89791e24bde0d3020b27df0e116088b34e",
+                "sha256:d59a3e788ab7e012ab2c4baed1b376da6366883ee20d7a5fc426816e3d7b1193"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==73.0.0"
+            "version": "==73.0.1"
         },
         "six": {
             "hashes": [
                 "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
                 "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
             "version": "==1.16.0"
         },
         "smmap": {
@@ -1643,14 +1537,6 @@
             "markers": "python_version >= '3.8'",
             "version": "==3.0.2"
         },
-        "sqlite-anyio": {
-            "hashes": [
-                "sha256:12a8b0ececaa63d70d5cc5f91edbd932fc1eca9da70ebce2b31d3a199767b3d3",
-                "sha256:aa10fa23b7e2ce9c792376630572e1e5837e6f6a9892d90c9ad57419daf4bc01"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==0.2.3"
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         "stack-data": {
             "hashes": [
                 "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9",
@@ -1718,11 +1604,11 @@
         },
         "types-python-dateutil": {
             "hashes": [
-                "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202",
-                "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"
+                "sha256:9649d1dcb6fef1046fb18bebe9ea2aa0028b160918518c34589a46045f6ebd98",
+                "sha256:f5889fcb4e63ed4aaa379b44f93c32593d50b9a94c9a60a0c854d8cc3511cd57"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2.9.0.20240316"
+            "version": "==2.9.0.20240821"
         },
         "typing-extensions": {
             "hashes": [
@@ -1787,19 +1673,19 @@
         },
         "widgetsnbextension": {
             "hashes": [
-                "sha256:55d4d6949d100e0d08b94948a42efc3ed6dfdc0e9468b2c4b128c9a2ce3a7a36",
-                "sha256:8b22a8f1910bfd188e596fe7fc05dcbd87e810c8a4ba010bdb3da86637398474"
+                "sha256:74b2692e8500525cc38c2b877236ba51d34541e6385eeed5aec15a70f88a6c71",
+                "sha256:ffcb67bc9febd10234a362795f643927f4e0c05d9342c727b65d2384f8feacb6"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==4.0.11"
+            "version": "==4.0.13"
         },
         "zipp": {
             "hashes": [
-                "sha256:0145e43d89664cfe1a2e533adc75adafed82fe2da404b4bbb6b026c0157bdb31",
-                "sha256:58da6168be89f0be59beb194da1250516fdaa062ccebd30127ac65d30045e10d"
+                "sha256:9960cd8967c8f85a56f920d5d507274e74f9ff813a0ab8889a5b5be2daf44064",
+                "sha256:c22b14cc4763c5a5b04134207736c107db42e9d3ef2d9779d465f5f1bcba572b"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==3.20.0"
+            "version": "==3.20.1"
         }
     },
     "develop": {
@@ -2024,7 +1910,7 @@
                 "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
                 "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
             "version": "==1.16.0"
         },
         "stack-data": {