From a09d1d08639e85db181095f84adcac29f71ab485 Mon Sep 17 00:00:00 2001
From: Ekaterina Kazantseva
 <82141791+katerinakazantseva@users.noreply.github.com>
Date: Fri, 17 May 2024 18:26:07 +0400
Subject: [PATCH] Update python-app.yml

---
 .github/workflows/python-app.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
index 4b9426e..8c2fc08 100644
--- a/.github/workflows/python-app.yml
+++ b/.github/workflows/python-app.yml
@@ -38,5 +38,6 @@ jobs:
         conda env create -f environment.yml -n strainy
     - name: Test strainy
       run: |
+        conda init
         conda activate strainy
         ./strainy.py --gfa test_set/toy.gfa --fastq test_set/toy.fastq.gz --output out_strainy --mode hifi --threads 8