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requirements.txt
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requirements.txt
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aiohttp==3.8.6
aiosignal==1.3.1
appdirs==1.4.4
async-timeout==4.0.3
attrs==23.1.0
beautifulsoup4==4.12.2
biopandas==0.5.1.dev0
biopython==1.81
bioservices==1.11.2
cattrs==23.1.2
certifi==2023.7.22
charset-normalizer==3.3.0
click==8.1.7
colorama==0.4.6
colorlog==6.7.0
contourpy==1.1.1
cycler==0.12.1
deepdiff==6.6.1
easydev==0.12.1
exceptiongroup==1.1.3
filelock==3.12.4
fonttools==4.43.1
frozenlist==1.4.0
fsspec==2023.9.2
gevent==23.9.1
graphein==1.7.3
greenlet==3.0.0
grequests==0.7.0
h5py==3.10.0
idna==3.4
importlib-resources==6.1.0
jaxtyping==0.2.23
Jinja2==3.1.2
joblib==1.3.2
kiwisolver==1.4.5
lightning-utilities==0.9.0
loguru==0.7.2
looseversion==1.1.2
lxml==4.9.3
markdown-it-py==3.0.0
MarkupSafe==2.1.3
matplotlib==3.8.0
mdurl==0.1.2
mmtf-python==1.1.3
mpmath==1.3.0
msgpack==1.0.7
multidict==6.0.4
multipledispatch==1.0.0
networkx==3.2
numpy==1.23.5
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==8.9.2.26
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.18.1
nvidia-nvjitlink-cu12==12.3.52
nvidia-nvtx-cu12==12.1.105
ordered-set==4.1.0
packaging==23.2
pandas==1.5.3
pexpect==4.8.0
-e git+ssh://[email protected]/kamurani/phospholite.git@d7b0befbbda5fcb9814c8ae938c61dfd9785e602#egg=phospholite
-e git+ssh://[email protected]/kamurani/phosphosite.git@9479e074c6d20afb08f50d1ad62d55e2b892afdb#egg=phosphosite
Pillow==10.1.0
platformdirs==3.11.0
plotly==5.17.0
psutil==5.9.6
ptyprocess==0.7.0
pydantic==1.10.13
Pygments==2.16.1
pyparsing==3.1.1
python-dateutil==2.8.2
pytorch-lightning==2.1.0
pytz==2023.3.post1
PyYAML==6.0.1
requests==2.31.0
requests-cache==1.1.0
rich==13.6.0
rich-click==1.7.0
scikit-learn==1.3.1
scipy==1.11.3
seaborn==0.13.0
six==1.16.0
soupsieve==2.5
suds-community==1.1.2
sympy==1.12
tenacity==8.2.3
threadpoolctl==3.2.0
torch==2.1.0
torch_geometric==2.4.0
torchmetrics==1.2.0
tqdm==4.66.1
triton==2.1.0
typeguard==2.13.3
typing_extensions==4.5.0
tzdata==2023.3
url-normalize==1.4.3
urllib3==2.0.7
wget==3.2
wrapt==1.15.0
xarray==2023.10.1
xmltodict==0.13.0
yarl==1.9.2
zipp==3.17.0
zope.event==5.0
zope.interface==6.1