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ChangeLog
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21/05/17 -*- Version 1.5.3 -*-
* New conditional group randomization procedure (R script)
* Compatibility update with Bio++ 2.3.0
18/09/16 -*- Version 1.5.2 -*-
05/03/15 Julien Dutheil
* Added norm values in output info files.
09/10/14 -*- Version 1.5.1 -*-
12/06/14 Julien Dutheil
* Several bug fixed. Simplified interface with more default values.
19/04/11 Julien Dutheil
* New mapping options. Super fast multiple (weighted) substitution mapping!
29/03/11 -*- Version 1.4.1 -*-
21/07/11 Julien Dutheil
* Bug fixed in candidates groups analysis.
29/03/11 -*- Version 1.4.0 -*-
24/11/10 Julien Dutheil
* Debugged Z-score p-value computation.
* Added example directory with simple cases.
* TODO: add built-in p-value computation for CoMap pair test.
19/11/10 Julien Dutheil
* Added new Program Mica, and started to implement efficient pvalue computation.
24/11/09 Julien Dutheil
* Added new MI statistic
* New substitution mapping procedure, base on the probability of observing at
least one jump.
17/09/09 Julien Dutheil
* Switched to CMake building system.
* Compat update with Bio++ devel version.
* A few warnings removed.
07/07/09 Julien Dutheil
* New sign in Grantham distance, so that it makes more sense to use it with
the compensation method.
22/04/09 Julien Dutheil
* Code and output file format updated + new pairwise analysis.
21/01/08 -*- Version 1.3.0 -*-
18/01/08 Julien Dutheil
* Bug fixed: sites not analysable now have a statistic and p-value of NA
in the 'candidate' method.
10/01/08 Julien Dutheil
* Compatibility update with Bio++ (future 1.5 release).
* Added support for non-homogeneous models.
07/11/07 Julien Dutheil
* Compatibility update with Bio++.
* Start implementation of new test when candidate positions are available.
05/08/07 Julien Dutheil
* New R scripts: type II test removed, new FDR computation.
* More detailled simulation files for FR computation.
* Possibility to limit the size of the groups in simulation file: faster and
output file smaller.
19/03/07 -*- Version 1.2.0 -*-
* Compatibility update with Bio++ 1.4.
19/03/07 -*- Version 1.1.0 -*-
* Need the latest CVS version of Bio++
* Update for compatibility with Bio++ 1.3.
* Weighted substitution mapping: possibility to use a weight from AAIndex 1
and 2.
* Compensation test.
* New p-value computation procedure.
29/08/06 -*- Version 1.0.1 -*-
25/08/06 Julien Dutheil
* Update for compatibility with PhylLib 1.2.
* Removed garbage output when simulating.
* New method for detecting compensatory mutations (beta).
26/07/06 Julien Dutheil
* Version 1.0.0 (first public release).