MSA from pdb_seqres.txt?

[LongHung-Pham]

Thank you for your great work in building this tool. I'm following the data processing pipeline and I just have one small question to confirm. At step 5 (Creating the MSA), is the input to ColabFold the pdb_seqres.txt file or is it the clustered files? Are any of the filters (release time before 2021/9/30; resolution <= 9.0; etc.) applied here to the sequences?

Thank you and really much and I hope to hear from you.