pyproject.toml

[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"
# read more about configuring hatch at:
# https://hatch.pypa.io/latest/config/build/

[tool.hatch.version]
source = "vcs"

[tool.hatch.build.targets.wheel]
only-include = ["EmbedSeg"]
sources = ["EmbedSeg"]

# https://peps.python.org/pep-0621/
[project]
name = "EmbedSeg"
dynamic = ["version"]
description = "EmbedSeg provides automatic detection and segmentation of objects in microscopy images"
readme = "README.md"
requires-python = ">=3.8"
license = { text = "BSD-3-Clause" }
authors = [
    { name = 'Manan Lalit', email = 'lalitm@janelia.hhmi.org' },
    { name = 'Pavel Tomancak' },
    { name = 'Florian Jug' },
]
classifiers = [
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "License :: OSI Approved :: BSD License",
]
dependencies = [
    "matplotlib",
    "numpy",
    "scipy",
    "tifffile",
    "numba",
    "tqdm",
    "jupyter",
    "pandas",
    "seaborn",
    "scikit-image",
    "colorspacious",
    "pycocotools",
]

[project.optional-dependencies]
# development dependencies and tooling
test = ["pytest", "pytest-cov"]

# https://docs.pytest.org/en/6.2.x/customize.html
[tool.pytest.ini_options]
minversion = "6.0"
testpaths = ["EmbedSeg/_tests"]

[project.urls]
homepage = "https://github.com/juglab/EmbedSeg/"
repository = "https://github.com/juglab/EmbedSeg/"