From e2609535c5be69bdf137ec2ae893ade063ef842c Mon Sep 17 00:00:00 2001
From: jsaintvanne <julien.saint-vanne@oniris-nantes.fr>
Date: Thu, 4 Jan 2024 09:53:49 +0100
Subject: [PATCH] try new setup

---
 .github/workflows/publish.yml | 25 ++++++++++++-------------
 1 file changed, 12 insertions(+), 13 deletions(-)

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index e5e4055..6b1b905 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -8,33 +8,32 @@ on:
     branches: ["doc-ju"]
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
-  
-# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
-permissions:
-  contents: write
-  pages: write
-  id-token: write
-
-# Allow one concurrent deployment
-concurrency:
-  group: "pages"
-  cancel-in-progress: true
 
 jobs:
   # Single deploy job since we're just deploying
   build-deploy:
     runs-on: ubuntu-latest
+    permissions:
+      contents: write
     steps:
-      - name: Checkout
+      - name: Check out repository
         uses: actions/checkout@v4
 
       - name: Set up Quarto
         uses: quarto-dev/quarto-actions/setup@v2
 
+      - name: Install Python and Dependencies
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+          cache: 'pip'
+      - run: pip install jupyter
+      - run: pip install -r requirements.txt
+
       - name: Render and Publish
         uses: quarto-dev/quarto-actions/publish@v2
         with:
-        path: 'Worklow4Metabolomics\ Galaxy\ Documentation/docs'
+          path: 'Workflow4Metabolomics\ Galaxy\ Documentation/docs'
           target: gh-pages
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
\ No newline at end of file