publish.yml

# Workflow for rendering and deploying quarto site to GitHub Pages
# Based on the GitHub example static content deploy action
name: Deploy Quarto site to Pages

on:
  # Runs on pushes targeting the default branch
  push:
    branches: ["doc-ju"]
  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:
  
# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
  contents: write
  pages: write
  id-token: write

# Allow one concurrent deployment
concurrency:
  group: "pages"
  cancel-in-progress: true

jobs:
  # Single deploy job since we're just deploying
  build-deploy:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Set up Quarto
        uses: quarto-dev/quarto-actions/setup@v2

      - name: Render and Publish
        uses: quarto-dev/quarto-actions/publish@v2
        with:
        path: 'Worklow4Metabolomics\ Galaxy\ Documentation/docs'
          target: gh-pages
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}