publish.yml

# Workflow for rendering and deploying quarto site to GitHub Pages
# Based on the GitHub example static content deploy action
name: 🚀 Deploy Quarto site to Pages

# Allow one concurrent deployment
concurrency:
  group: "pages"
  cancel-in-progress: true

# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
  contents: write
  pages: write
  id-token: write

on:
  workflow_dispatch:
  # Runs on pushes targeting the default branch
  push:
    branches: ["doc-ju"]

jobs:
  # Single deploy job since we're just deploying
  build-deploy:
    runs-on: ubuntu-latest
    steps:
      - name: 📂 Check out repository
        uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: 🚚 Set up Quarto
        uses: quarto-dev/quarto-actions/setup@v2
        
      - name: 🎉 Deploy to GitHub Pages
        uses: quarto-dev/quarto-actions/publish@v2
        with:
          path: 'Workflow4Metabolomics\ Galaxy\ Documentation/docs'
          target: gh-pages
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}