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creating epoch_encoder.csv file #337

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icarmel opened this issue Feb 28, 2024 · 0 comments
Open

creating epoch_encoder.csv file #337

icarmel opened this issue Feb 28, 2024 · 0 comments

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@icarmel
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icarmel commented Feb 28, 2024

Hi Jeff,
could you please share instructions on how to generate data that would be saved into the 'epoch_encoder_file' csv?
In the metadata file I use, I added the epoch labels in the 'amplitude_discriminators'.
when running this yml in neurotic the epoch-viewer table is empty (as the 'epoch_encoder_file' csv file)

Kindly advise. Thanks, Idit

the yml I'm using:

`12-20-23 R005:
description: '[IG] carbachol patterns'
data_dir: 20.12.22005Export
data_file: 20.12.22005Export.axgx
#epoch_encoder_file: EPOCH-ENCODER_20.12.22_005.csv ### this file contains only the headers. How do I populate it with data from axgx file?

plots:
    - channel: I2
    - channel: RN
    - channel: BN2
    - channel: BN3
    
epoch_encoder_possible_labels:
    - b6/b9 retraction phase
    - B38 activity
    
amplitude_discriminators:

    
    - name: B6/B9
      channel: BN2
      units: uV
      amplitude: [35, 70]
      #epoch: b6/b9 retraction phase
      
    - name: B8
      channel: RN
      units: uV
      amplitude: [15, 60]

    - name: B38
      channel: BN2
      units: uV
      amplitude: [32, 50]
      epoch: B38 activity

    - name: B4/B5
      channel: BN3
      units: uV
      amplitude: [-18, -10]
      
    - name: B3
      channel: BN2
      units: uV
      amplitude: [50, 80]

`

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