From 985103945cdb84189000d2d99e63b4f632f77ac3 Mon Sep 17 00:00:00 2001
From: jonathan-columbiau <ja3527@cumc.columbia.edu>
Date: Fri, 26 Jan 2024 16:06:57 -0500
Subject: [PATCH] Added basic website functionality so it is hosted on Github
 via Github pages

---
 .Rbuildignore                  |  1 +
 .github/.gitignore             |  1 +
 .github/workflows/pkgdown.yaml | 48 ++++++++++++++++++++++++++++++++++
 DESCRIPTION                    |  2 +-
 _pkgdown.yml                   |  2 +-
 5 files changed, 52 insertions(+), 2 deletions(-)
 create mode 100644 .github/.gitignore
 create mode 100644 .github/workflows/pkgdown.yaml

diff --git a/.Rbuildignore b/.Rbuildignore
index 23d73cb..f05fad3 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -4,3 +4,4 @@
 ^_pkgdown\.yml$
 ^docs$
 ^pkgdown$
+^\.github$
diff --git a/.github/.gitignore b/.github/.gitignore
new file mode 100644
index 0000000..2d19fc7
--- /dev/null
+++ b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
new file mode 100644
index 0000000..ed7650c
--- /dev/null
+++ b/.github/workflows/pkgdown.yaml
@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.4.1
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs
diff --git a/DESCRIPTION b/DESCRIPTION
index 7947ed8..400aeb3 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -33,5 +33,5 @@ Imports:
     tidytree
 Remotes: 
     bnprks/BPCells
-URL: https://github.com/jonathan-columbiau/lionmap
+URL: https://github.com/jonathan-columbiau/lionmap, https://jonathan-columbiau.github.io/lionmap/
 BugReports: https://github.com/jonathan-columbiau/lionmap/issues
diff --git a/_pkgdown.yml b/_pkgdown.yml
index d71acfb..31572bf 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -1,4 +1,4 @@
-url: ~
+url: https://jonathan-columbiau.github.io/lionmap/
 template:
   bootstrap: 5