From a9812ad188bf65366e9f681187f34fe21b918be2 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Tue, 2 Jul 2024 00:35:08 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0)
- [github.com/mattlqx/pre-commit-sign: v1.1.3 → v1.2.0](https://github.com/mattlqx/pre-commit-sign/compare/v1.1.3...v1.2.0)
- [github.com/asottile/pyupgrade: v3.15.0 → v3.16.0](https://github.com/asottile/pyupgrade/compare/v3.15.0...v3.16.0)
- [github.com/nbQA-dev/nbQA: 1.7.1 → 1.8.5](https://github.com/nbQA-dev/nbQA/compare/1.7.1...1.8.5)
- [github.com/psf/black: 23.12.1 → 24.4.2](https://github.com/psf/black/compare/23.12.1...24.4.2)
---
 .pre-commit-config.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 8f2f5dc..037fd97 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -3,7 +3,7 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
       - id: check-added-large-files
       - id: check-case-conflict
@@ -20,7 +20,7 @@ repos:
       - id: check-ast
 
   - repo: https://github.com/mattlqx/pre-commit-sign
-    rev: v1.1.3
+    rev: v1.2.0
     hooks:
       - id: sign-commit
   - repo: https://github.com/pre-commit/pygrep-hooks
@@ -31,7 +31,7 @@ repos:
       - id: rst-directive-colons
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.15.0
+    rev: v3.16.0
     hooks:
       - id: pyupgrade
         args: [ --py36-plus ]
@@ -43,7 +43,7 @@ repos:
 
   # Notebook formatting
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.1
+    rev: 1.8.5
     hooks:
 
       - id: nbqa-pyupgrade
@@ -57,6 +57,6 @@ repos:
         stages: [ manual ]
 
   - repo: https://github.com/psf/black
-    rev: 23.12.1
+    rev: 24.4.2
     hooks:
       - id: black

From ebfedcc1fb26ecf423199439387da1b03983cc5b Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Tue, 2 Jul 2024 00:35:21 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 .travis.yml                                    | 1 -
 raredecay/analysis/compatibility_tools.py      | 1 -
 raredecay/analysis/ml_analysis.py              | 2 ++
 raredecay/analysis/physical_analysis.py        | 1 -
 raredecay/config.py                            | 1 -
 raredecay/data.py                              | 1 -
 raredecay/globals_.py                          | 1 -
 raredecay/meta_config.py                       | 2 +-
 raredecay/ml.py                                | 1 -
 raredecay/reweight.py                          | 1 -
 raredecay/score.py                             | 1 -
 raredecay/settings.py                          | 1 -
 raredecay/tools/__init__.py                    | 1 +
 raredecay/tools/data_storage.py                | 1 -
 raredecay/tools/data_tools.py                  | 1 -
 raredecay/tools/dev_tool.py                    | 1 -
 raredecay/tools/metrics.py                     | 1 -
 raredecay/tools/output.py                      | 1 -
 requirements.txt                               | 2 +-
 scripts_readyToUse/reweightCV_score_example.py | 1 +
 20 files changed, 6 insertions(+), 17 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 8b13789..e69de29 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -1 +0,0 @@
-
diff --git a/raredecay/analysis/compatibility_tools.py b/raredecay/analysis/compatibility_tools.py
index 5248591..8e92596 100644
--- a/raredecay/analysis/compatibility_tools.py
+++ b/raredecay/analysis/compatibility_tools.py
@@ -8,7 +8,6 @@
 
 """
 
-
 from raredecay.tools import dev_tool
 
 
diff --git a/raredecay/analysis/ml_analysis.py b/raredecay/analysis/ml_analysis.py
index 7ea8d96..e35493c 100644
--- a/raredecay/analysis/ml_analysis.py
+++ b/raredecay/analysis/ml_analysis.py
@@ -20,6 +20,7 @@
 
 The functions serve as basic tools, which do already a lot of the work.
 """
+
 import copy
 import timeit
 import warnings
@@ -1379,6 +1380,7 @@ def mcreweighted_as_real(
 
 # collect all the new weights to get a really cross-validated reweighted dataset
 
+
 # COMPATIBILITY LAYER START
 # OLD FUNCTION, DEPRECEATED
 def reweight_Kfold(
diff --git a/raredecay/analysis/physical_analysis.py b/raredecay/analysis/physical_analysis.py
index 2f58a3b..41b6546 100644
--- a/raredecay/analysis/physical_analysis.py
+++ b/raredecay/analysis/physical_analysis.py
@@ -16,7 +16,6 @@
 values.
 """
 
-
 import copy
 
 import matplotlib.pyplot as plt
diff --git a/raredecay/config.py b/raredecay/config.py
index b88fffe..fd08988 100644
--- a/raredecay/config.py
+++ b/raredecay/config.py
@@ -6,7 +6,6 @@
 @author: Jonas Eschle "Mayou36"
 """
 
-
 __all__ = ["RUN_NAME", "run_message", "OUTPUT_CFG", "save_fig_cfg", "logger_cfg"]
 
 RUN_NAME = "Default run name"
diff --git a/raredecay/data.py b/raredecay/data.py
index 796341f..619deec 100644
--- a/raredecay/data.py
+++ b/raredecay/data.py
@@ -4,7 +4,6 @@
 
 """
 
-
 from raredecay.analysis.physical_analysis import add_branch_to_rootfile
 from raredecay.tools.data_storage import HEPDataStorage
 from raredecay.tools.data_tools import adv_return, make_root_dict, to_list, try_unpickle
diff --git a/raredecay/globals_.py b/raredecay/globals_.py
index 07a7928..8f2dd7c 100644
--- a/raredecay/globals_.py
+++ b/raredecay/globals_.py
@@ -47,7 +47,6 @@
     can be extended if wanted
 """
 
-
 from . import config as cfg
 from . import meta_config as meta_cfg
 from .tools import output
diff --git a/raredecay/meta_config.py b/raredecay/meta_config.py
index f7da107..590b466 100644
--- a/raredecay/meta_config.py
+++ b/raredecay/meta_config.py
@@ -242,7 +242,7 @@ def set_parallel_profile(n_cpu=-1, gpu_in_use=False, stratified_kfolding=True):
 # about but may be happy to have them saved somewhere)
 DEFAULT_EXT_SAVE_FIG = dict(
     file_format=["png", "pdf"],
-    to_pickle=True
+    to_pickle=True,
     # save_cfg=None
 )
 
diff --git a/raredecay/ml.py b/raredecay/ml.py
index c692e82..cb5676e 100644
--- a/raredecay/ml.py
+++ b/raredecay/ml.py
@@ -4,7 +4,6 @@
 
 """
 
-
 try:
     from raredecay.analysis.ml_analysis import (
         backward_feature_elimination,
diff --git a/raredecay/reweight.py b/raredecay/reweight.py
index 03f2755..bcfb8dd 100644
--- a/raredecay/reweight.py
+++ b/raredecay/reweight.py
@@ -4,7 +4,6 @@
 
 """
 
-
 try:
     from raredecay.analysis.reweight import reweight, reweight_kfold
 except Exception as err:
diff --git a/raredecay/score.py b/raredecay/score.py
index a1e72d7..f56a90b 100644
--- a/raredecay/score.py
+++ b/raredecay/score.py
@@ -4,7 +4,6 @@
 
 """
 
-
 try:
     from raredecay.analysis.ml_analysis import mcreweighted_as_real
     from raredecay.tools.ml_scores import mayou_score, train_similar, train_similar_new
diff --git a/raredecay/settings.py b/raredecay/settings.py
index 8f31ba1..ae8637e 100644
--- a/raredecay/settings.py
+++ b/raredecay/settings.py
@@ -4,7 +4,6 @@
 @author: Jonas Eschle "Mayou36"
 """
 
-
 __all__ = [
     "initialize",
     "finalize",
diff --git a/raredecay/tools/__init__.py b/raredecay/tools/__init__.py
index 9d9cf36..6c7bdf8 100644
--- a/raredecay/tools/__init__.py
+++ b/raredecay/tools/__init__.py
@@ -5,4 +5,5 @@
 DEPRECEATED!DEPRECEATED!DEPRECEATED!DEPRECEATED!DEPRECEATED!
 
 """
+
 #
diff --git a/raredecay/tools/data_storage.py b/raredecay/tools/data_storage.py
index 635749c..6df5e13 100644
--- a/raredecay/tools/data_storage.py
+++ b/raredecay/tools/data_storage.py
@@ -12,7 +12,6 @@
 takes data, weights, targets, names and converts automatically, plots and more.
 """
 
-
 import copy
 import math
 import random
diff --git a/raredecay/tools/data_tools.py b/raredecay/tools/data_tools.py
index a9652cb..f7d6ac7 100644
--- a/raredecay/tools/data_tools.py
+++ b/raredecay/tools/data_tools.py
@@ -11,7 +11,6 @@
 Contains several tools to convert, load, save and plot data
 """
 
-
 import copy
 import os
 import pickle
diff --git a/raredecay/tools/dev_tool.py b/raredecay/tools/dev_tool.py
index c73d72d..fa0a303 100644
--- a/raredecay/tools/dev_tool.py
+++ b/raredecay/tools/dev_tool.py
@@ -11,7 +11,6 @@
 Contains several useful tools for all kind of programs
 """
 
-
 import collections
 
 import numpy as np
diff --git a/raredecay/tools/metrics.py b/raredecay/tools/metrics.py
index 288450c..cf163a3 100644
--- a/raredecay/tools/metrics.py
+++ b/raredecay/tools/metrics.py
@@ -9,7 +9,6 @@
 
 """
 
-
 import math as mt
 
 import numpy as np
diff --git a/raredecay/tools/output.py b/raredecay/tools/output.py
index bf9e9f8..7c89813 100644
--- a/raredecay/tools/output.py
+++ b/raredecay/tools/output.py
@@ -9,7 +9,6 @@
 
 """
 
-
 import copy
 import io as StringIO
 import os
diff --git a/requirements.txt b/requirements.txt
index 7ed1e29..ae1ebf6 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -3,9 +3,9 @@ hep_ml>=0.5.0
 matplotlib
 numpy
 pandas
-scipy
 rep @ git+https://github.com/REPlegacy/rep
 scikit-learn~=0.19.0  # otherwise, breaks REP
+scipy
 seaborn
 uproot
 xgboost<1.3  # TODO: negative weights and xgboost don't go well, error in 1.3+
diff --git a/scripts_readyToUse/reweightCV_score_example.py b/scripts_readyToUse/reweightCV_score_example.py
index 4e2a94a..58444ef 100644
--- a/scripts_readyToUse/reweightCV_score_example.py
+++ b/scripts_readyToUse/reweightCV_score_example.py
@@ -8,6 +8,7 @@
 
 The raredecay package is available at https://github.com/mayou36/raredecay
 """
+
 from raredecay import settings
 
 # first of all, it is advised to set some run-configurations like logger-level,