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Documentation

• Data model: General | File formats
• Interface:
  • Global settings
  • Data types
  • Identifiers
  • Construction
  • Low-level queries
  • Searching
  • Haplotype generation
• Benchmarks
• Version history

Public interface

Everything is in namespace gbwt.

• dynamic_gbwt.h: Construction interface
  • Includes gbwt.h
• gbwt.h: Query interface
  • Includes algorithms.h
  • Includes files.h
  • Includes support.h
• algorithms.h: Search algorithms
  • Includes support.h
• variants.h: Support structures for haplotype generation
  • Includes utils.h
• files.h: File formats
  • Includes utils.h
• support.h: Support structures
  • Includes utils.h
• utils.h: Definitions and utility methods