From 70052955e3e24431c2d2610156671df08c54e87f Mon Sep 17 00:00:00 2001 From: Jinseob Kim Date: Thu, 17 Jan 2019 21:27:23 +0900 Subject: [PATCH] 0.6.9 --- .Rbuildignore | 1 + .travis.yml | 32 +- DESCRIPTION | 8 +- NEWS.md | 13 + README.md | 3 +- appveyor.yml | 45 ++ docs/LICENSE-text.html | 359 -------------- docs/authors.html | 165 ------- docs/docsearch.css | 148 ------ docs/docsearch.js | 85 ---- docs/docsearch.json | 94 ---- docs/index.html | 189 ------- docs/link.svg | 12 - docs/news/index.html | 650 ------------------------- docs/pkgdown.css | 236 --------- docs/pkgdown.js | 115 ----- docs/pkgdown.yml | 5 - docs/reference/FilePs.html | 251 ---------- docs/reference/FilePsInput.html | 242 --------- docs/reference/FileRepeated.html | 241 --------- docs/reference/FileRepeatedInput.html | 233 --------- docs/reference/FileSurvey.html | 241 --------- docs/reference/FileSurveyInput.html | 233 --------- docs/reference/GEEModuleLinear.html | 231 --------- docs/reference/GEEModuleLogistic.html | 231 --------- docs/reference/GEEModuleUI.html | 202 -------- docs/reference/coxModule.html | 240 --------- docs/reference/coxUI.html | 202 -------- docs/reference/csvFile.html | 241 --------- docs/reference/csvFileInput.html | 233 --------- docs/reference/ggpairsModule.html | 223 --------- docs/reference/ggpairsModule2.html | 223 --------- docs/reference/ggpairsModuleUI1.html | 202 -------- docs/reference/ggpairsModuleUI2.html | 202 -------- docs/reference/ggplotdownUI.html | 202 -------- docs/reference/index.html | 435 ----------------- docs/reference/jsBasicAddin.html | 198 -------- docs/reference/jsBasicGadget.html | 207 -------- docs/reference/jsPropensityAddin.html | 198 -------- docs/reference/jsPropensityGadget.html | 214 -------- docs/reference/jsRepeatedAddin.html | 198 -------- docs/reference/jsRepeatedGadjet.html | 207 -------- docs/reference/jsSurveyGadget.html | 207 -------- docs/reference/jsSurveydAddin.html | 198 -------- docs/reference/kaplanModule.html | 236 --------- docs/reference/kaplanUI.html | 202 -------- docs/reference/logistic.display2.html | 223 --------- docs/reference/logisticModule.html | 236 --------- docs/reference/logisticModule2.html | 236 --------- docs/reference/mklist.html | 207 -------- docs/reference/mksetdiff.html | 206 -------- docs/reference/regress.display2.html | 223 --------- docs/reference/regressModule.html | 236 --------- docs/reference/regressModule2.html | 236 --------- docs/reference/regressModuleUI.html | 202 -------- docs/reference/tb1module.html | 270 ---------- docs/reference/tb1module2.html | 286 ----------- docs/reference/tb1moduleUI.html | 241 --------- docs/reference/tb1simple.html | 240 --------- docs/reference/tb1simple2.html | 243 --------- docs/reference/tb1simpleUI.html | 202 -------- 61 files changed, 89 insertions(+), 12131 deletions(-) create mode 100644 appveyor.yml delete mode 100644 docs/LICENSE-text.html delete mode 100644 docs/authors.html delete 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docs/reference/logisticModule2.html delete mode 100644 docs/reference/mklist.html delete mode 100644 docs/reference/mksetdiff.html delete mode 100644 docs/reference/regress.display2.html delete mode 100644 docs/reference/regressModule.html delete mode 100644 docs/reference/regressModule2.html delete mode 100644 docs/reference/regressModuleUI.html delete mode 100644 docs/reference/tb1module.html delete mode 100644 docs/reference/tb1module2.html delete mode 100644 docs/reference/tb1moduleUI.html delete mode 100644 docs/reference/tb1simple.html delete mode 100644 docs/reference/tb1simple2.html delete mode 100644 docs/reference/tb1simpleUI.html diff --git a/.Rbuildignore b/.Rbuildignore index 76be535d..2416112a 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -1,3 +1,4 @@ +^appveyor\.yml$ ^docs$ ^_pkgdown\.yml$ ^.*\.Rproj$ diff --git a/.travis.yml b/.travis.yml index 338fdebb..5f0c306f 100644 --- a/.travis.yml +++ b/.travis.yml @@ -4,12 +4,28 @@ cache: packages Imports: stats, data.table, shiny, readxl, DT, jstable, labelled, methods, epiDisplay, GGally, ggplot2, haven, rstudioapi, shinycustomloader, MatchIt, survey, tableone, jskm, survival Remotes: jinseob2kim/jstable, jinseob2kim/jskm -r_packages: - - covr +matrix: + allow_failures: + - r: devel -r_github_packages: - - jinseob2kim/jsmodule - - -after_success: - - Rscript -e 'library(covr); codecov()' + include: + - r: devel + - r: release + r_packages: + - covr + r_github_packages: + - r-lib/pkgdown + after_success: + - Rscript -e 'covr::codecov()' + - Rscript -e 'pkgdown::build_site()' + deploy: + provider: pages + skip-cleanup: true + github-token: $GITHUB_TOKEN + keep-history: true + local-dir: docs + on: + branch: master + - r: release + os: osx + - r: oldrel diff --git a/DESCRIPTION b/DESCRIPTION index dd4020d3..2f00a55e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,11 +1,11 @@ Package: jsmodule -Title: Shiny modules for medical research -Version: 0.6.8 -Date: 2019-01-16 +Title: jsmodule: Rstudio Addins and Shiny Modules for Medical Research +Version: 0.6.9 +Date: 2019-01-17 Authors@R: c(person("Jinseob", "Kim", email = "jinseob2kim@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9403-605X")), person("Anpanman", role = c("cph", "fnd")) ) -Description: Shiny modules for medical research. +Description: Rstudio Addins and Shiny Modules for Medical Research. Depends: R (>= 3.4.0) License: Apache License 2.0 Encoding: UTF-8 diff --git a/NEWS.md b/NEWS.md index 3c7d5d43..7690013d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,16 @@ +# jsmodule 0.6.9 + +## Bug fixes + +* Fix some spell for cran release. + +## Update + +* Update **travis-ci**. + +* Add **appveyor** CI to test **window** environment. + + # jsmodule 0.6.8 ## Update diff --git a/README.md b/README.md index 661be9fb..4046a7bf 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ # jsmodule [![Build Status](https://travis-ci.org/jinseob2kim/jsmodule.svg?branch=master)](https://travis-ci.org/jinseob2kim/jsmodule) +[![AppVeyor build status](https://ci.appveyor.com/api/projects/status/github/jinseob2kim/jsmodule?branch=master&svg=true)](https://ci.appveyor.com/project/jinseob2kim/jsmodule) [![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/jsmodule)](http://cran.r-project.org/package=jsmodule) [![codecov](https://codecov.io/github/jinseob2kim/jsmodule/branch/master/graphs/badge.svg)](https://codecov.io/github/jinseob2kim/jsmodule) [![GitHub issues](https://img.shields.io/github/issues/jinseob2kim/jsmodule.svg)](https://github.com/jinseob2kim/jsmodule/issues) @@ -10,7 +11,7 @@ [![GitHub last commit](https://img.shields.io/github/last-commit/google/skia.svg)](https://github.com/jinseob2kim/jsmodule) [![GitHub contributors](https://img.shields.io/github/contributors/jinseob2kim/jsmodule.svg?maxAge=2592000)](https://github.com/jinseob2kim/jsmodule/graphs/contributors) -Rstudio addins and shiny modules for medical research +Rstudio Addins and Shiny Modules for Medical Research ## Install diff --git a/appveyor.yml b/appveyor.yml new file mode 100644 index 00000000..c6c14384 --- /dev/null +++ b/appveyor.yml @@ -0,0 +1,45 @@ +# DO NOT CHANGE the "init" and "install" sections below + +# Download script file from GitHub +init: + ps: | + $ErrorActionPreference = "Stop" + Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1" + Import-Module '..\appveyor-tool.ps1' + +install: + ps: Bootstrap + +cache: + - C:\RLibrary + +# Adapt as necessary starting from here + +build_script: + - travis-tool.sh install_deps + +test_script: + - travis-tool.sh run_tests + +on_failure: + - 7z a failure.zip *.Rcheck\* + - appveyor PushArtifact failure.zip + +artifacts: + - path: '*.Rcheck\**\*.log' + name: Logs + + - path: '*.Rcheck\**\*.out' + name: Logs + + - path: '*.Rcheck\**\*.fail' + name: Logs + + - path: '*.Rcheck\**\*.Rout' + name: Logs + + - path: '\*_*.tar.gz' + name: Bits + + - path: '\*_*.zip' + name: Bits diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html deleted file mode 100644 index e09a8bda..00000000 --- a/docs/LICENSE-text.html +++ /dev/null @@ -1,359 +0,0 @@ - - - - - - - - -License • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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-} - -.algolia-autocomplete .ds-dropdown-menu .ds-suggestions { - margin-top: 0 -} - -.algolia-autocomplete .algolia-docsearch-suggestion { - padding: 0; - overflow: visible -} - -.algolia-autocomplete .algolia-docsearch-suggestion--category-header { - padding: .125rem 1rem; - margin-top: 0; - font-size: 1.3em; - font-weight: 500; - color: #00008B; - border-bottom: 0 -} - -.algolia-autocomplete .algolia-docsearch-suggestion--wrapper { - float: none; - padding-top: 0 -} - -.algolia-autocomplete .algolia-docsearch-suggestion--subcategory-column { - float: none; - width: auto; - padding: 0; - text-align: left -} - -.algolia-autocomplete .algolia-docsearch-suggestion--content { - float: none; - width: auto; - padding: 0 -} - -.algolia-autocomplete .algolia-docsearch-suggestion--content::before { - display: none -} - -.algolia-autocomplete .ds-suggestion:not(:first-child) .algolia-docsearch-suggestion--category-header { - padding-top: .75rem; - margin-top: .75rem; - border-top: 1px solid rgba(0, 0, 0, .1) -} - -.algolia-autocomplete .ds-suggestion .algolia-docsearch-suggestion--subcategory-column { - display: block; - padding: .1rem 1rem; - margin-bottom: 0.1; - font-size: 1.0em; - font-weight: 400 - /* display: none */ -} - -.algolia-autocomplete .algolia-docsearch-suggestion--title { - display: block; - padding: .25rem 1rem; - margin-bottom: 0; - font-size: 0.9em; - font-weight: 400 -} - -.algolia-autocomplete .algolia-docsearch-suggestion--text { - padding: 0 1rem .5rem; - margin-top: -.25rem; - font-size: 0.8em; - font-weight: 400; - line-height: 1.25 -} - -.algolia-autocomplete .algolia-docsearch-footer { - width: 110px; - height: 20px; - z-index: 3; - margin-top: 10.66667px; - float: right; - font-size: 0; - line-height: 0; -} - -.algolia-autocomplete .algolia-docsearch-footer--logo { - background-image: url("data:image/svg+xml;utf8,"); - background-repeat: no-repeat; - background-position: 50%; - background-size: 100%; - overflow: hidden; - text-indent: -9000px; - width: 100%; - height: 100%; - display: block; - transform: translate(-8px); -} - -.algolia-autocomplete .algolia-docsearch-suggestion--highlight { - color: #FF8C00; - background: rgba(232, 189, 54, 0.1) -} - - -.algolia-autocomplete .algolia-docsearch-suggestion--text .algolia-docsearch-suggestion--highlight { - box-shadow: inset 0 -2px 0 0 rgba(105, 105, 105, .5) -} - -.algolia-autocomplete .ds-suggestion.ds-cursor .algolia-docsearch-suggestion--content { - background-color: rgba(192, 192, 192, .15) -} diff --git a/docs/docsearch.js b/docs/docsearch.js deleted file mode 100644 index b35504cd..00000000 --- a/docs/docsearch.js +++ /dev/null @@ -1,85 +0,0 @@ -$(function() { - - // register a handler to move the focus to the search bar - // upon pressing shift + "/" (i.e. "?") - $(document).on('keydown', function(e) { - if (e.shiftKey && e.keyCode == 191) { - e.preventDefault(); - $("#search-input").focus(); - } - }); - - $(document).ready(function() { - // do keyword highlighting - /* modified from https://jsfiddle.net/julmot/bL6bb5oo/ */ - var mark = function() { - - var referrer = document.URL ; - var paramKey = "q" ; - - if (referrer.indexOf("?") !== -1) { - var qs = referrer.substr(referrer.indexOf('?') + 1); - var qs_noanchor = qs.split('#')[0]; - var qsa = qs_noanchor.split('&'); - var keyword = ""; - - for (var i = 0; i < qsa.length; i++) { - var currentParam = qsa[i].split('='); - - if (currentParam.length !== 2) { - continue; - } - - if (currentParam[0] == paramKey) { - keyword = decodeURIComponent(currentParam[1].replace(/\+/g, "%20")); - } - } - - if (keyword !== "") { - $(".contents").unmark({ - done: function() { - $(".contents").mark(keyword); - } - }); - } - } - }; - - mark(); - }); -}); - -/* Search term highlighting ------------------------------*/ - -function matchedWords(hit) { - var words = []; - - var hierarchy = hit._highlightResult.hierarchy; - // loop to fetch from lvl0, lvl1, etc. - for (var idx in hierarchy) { - words = words.concat(hierarchy[idx].matchedWords); - } - - var content = hit._highlightResult.content; - if (content) { - words = words.concat(content.matchedWords); - } - - // return unique words - var words_uniq = [...new Set(words)]; - return words_uniq; -} - -function updateHitURL(hit) { - - var words = matchedWords(hit); - var url = ""; - - if (hit.anchor) { - url = hit.url_without_anchor + '?q=' + escape(words.join(" ")) + '#' + hit.anchor; - } else { - url = hit.url + '?q=' + escape(words.join(" ")); - } - - return url; -} diff --git a/docs/docsearch.json b/docs/docsearch.json deleted file mode 100644 index 4fac74c9..00000000 --- a/docs/docsearch.json +++ /dev/null @@ -1,94 +0,0 @@ -{ - "index_name": "jinseob2kim_jsmodule", - "start_urls": [ - { - "url": "/index.html", - "selectors_key": "homepage", - "tags": [ - "homepage" - ] - }, - { - "url": "/reference", - "selectors_key": "reference", - "tags": [ - "reference" - ] - }, - { - "url": "/articles", - "selectors_key": "articles", - "tags": [ - "articles" - ] - } - ], - "stop_urls": [ - "/reference/$", - "/reference/index.html", - "/articles/$", - "/articles/index.html" - ], - "sitemap_urls": [ - "/sitemap.xml" - ], - "selectors": { - "homepage": { - "lvl0": { - "selector": ".contents h1", - "default_value": "jsmodule Home page" - }, - "lvl1": { - "selector": ".contents h2" - }, - "lvl2": { - "selector": ".contents h3", - "default_value": "Context" - }, - "lvl3": ".ref-arguments td, .ref-description", - "text": ".contents p, .contents li, .contents .pre" - }, - "reference": { - "lvl0": { - "selector": ".contents h1" - }, - "lvl1": { - "selector": ".contents .name", - "default_value": "Argument" - }, - "lvl2": { - "selector": ".ref-arguments th", - "default_value": "Description" - }, - "lvl3": ".ref-arguments td, .ref-description", - "text": ".contents p, .contents li" - }, - "articles": { - "lvl0": { - "selector": ".contents h1" - }, - "lvl1": { - "selector": ".contents .name" - }, - "lvl2": { - "selector": ".contents h2, .contents h3", - "default_value": "Context" - }, - "text": ".contents p, .contents li, .tempate-article .contents .pre" - } - }, - "selectors_exclude": [ - ".dont-index" - ], - "min_indexed_level": 2, - "custom_settings": { - "separatorsToIndex": "_", - "attributesToRetrieve": [ - "hierarchy", - "content", - "anchor", - "url", - "url_without_anchor" - ] - } -} diff --git a/docs/index.html b/docs/index.html deleted file mode 100644 index 7cf379ab..00000000 --- a/docs/index.html +++ /dev/null @@ -1,189 +0,0 @@ - - - - - - - -Shiny modules for medical research • jsmodule - - - - - - - - - - - -
-
- - - -
-
-
-

-jsmodule

- -

Rstudio addins and shiny modules for medical research

-
-

-Install

-
devtools::install_github(c('jinseob2kim/jstable', 'jinseob2kim/jsmodule'))
-
-
-

-Gadget

-
-

-Basic statistics

- -

-
-
-

-Propensity score analysis

- -

-
-
-

-Repeated measure analysis

- -
-
-

-Survey data analysis

- -
-
-
-
- - -
- - -
- - - - - diff --git a/docs/link.svg b/docs/link.svg deleted file mode 100644 index 88ad8276..00000000 --- a/docs/link.svg +++ /dev/null @@ -1,12 +0,0 @@ - - - - - - diff --git a/docs/news/index.html b/docs/news/index.html deleted file mode 100644 index 0dcf5b0b..00000000 --- a/docs/news/index.html +++ /dev/null @@ -1,650 +0,0 @@ - - - - - - - - -Changelog • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- - - -
- -
-
-
-

Changelog

- Source: NEWS.md -
- -
-

-jsmodule 0.6.8

-
-

-Update

-
    -
  • Warning if there are stongly correlated independent variables in regressModule, jsBasicGadget.
    • -
-
-
-
-

-jsmodule 0.6.7

-
-

-Update

-
    -
  • Show unweighted & weighted table 1 at same tab in jsSurveyGadget -
    • -
-
-
-

-Bug fixes

-
    -
  • Initial cluster variable state in jsSurveyGadget -
    • -
-
-
-
-

-jsmodule 0.6.6

-
-

-Update

-
    -
  • Add unweighted table 1 to jsSurveyGadget -
    • -
-
-
-

-Bug fixes

-
    -

  • Apply list tye independent variables to regressModule, logisticModule, GEEModuleLinear and GEEModuleLogistic

    • -

  • Change sub-group analysis’s reactive methods: regressModule, logisticModule, GEEModuleLinear and GEEModuleLogistic

    • -
-
-
-
-

-jsmodule 0.6.5

-
-

-Update

-
    -

  • Add marginal cox model option to coxModule, kaplanModule and jsRepeatedGadget

    • -

  • Add Overall kaplan-meier plot to kaplanModule

    • -

  • Set default cluster, strata and weights to None in jsSurveyGadget, FileSurveyInput

    • -
-
-
-

-Bug fixes

-
    -

  • Some error comments in coxModule and kaplanModule

    • -

  • Change default candidate dependent variables to categorical variables with 0, 1 in GEEModuleLogistic, jsRepeatedGadget

    • -
-
-
-
-

-jsmodule 0.6.4

-
-

-New module

-
    -

  • Module for Survival analysis: coxUI, coxModule, kaplanUI and kaplanModule

    • -

  • Module for ggplot download UI: ggplotdownUI

    • -
-
-
-

-Update

-
    -
  • Add survival analysis to jsBasicGadget, jsSurveyGadget -
    • -
-
-
-

-Bug fixes

-
    -
  • jsPropensityGadget
    • -
-
-
-
-

-jsmodule 0.6.2

-
    -

  • Bug fixes : Label information in regressModule, logisticModule

    • -

  • Update: default.unires option to regressModule, logisticModule

    • -
-
-
-

-jsmodule 0.6.1

-
    -
  • Update : Apply complex survey design to FileSurvey, regressModule, logisticModule and jsSurveyGadget -
    • -
-
-
-

-jsmodule 0.6.0

-
-

-New Gadget

-
    -
  • Shiny Gadget for survey data analysis: jsSurveyGadget -
    • -
-
-
-

-New module

-
    -
  • Module for survey data analysis: FileSurvey -
    • -
-
-
-

-Update

-
    -
  • Survey analysis option to regressModule, logisticModule and tb1 -
    • -
-
-
-
-

-jsmodule 0.5.7

-
    -
  • Bug fixes: sub-group option in regressModule, logisticModule, jsPropensityGadget, GEEModuleLinear and GEEModuleLogistic -
    • -
-
-
-

-jsmodule 0.5.6

-
    -
  • Add testthat.
    • -
-
-
-

-jsmodule 0.5.5

-
-

-New module

-
    -
  • Modules for repeated measure analysis: FileRepeated, GEEModuleUI, GEEModuleLinear and GEEModuleLogistic -
    • -
-
-
-

-New Gadget

-
    -
  • Shiny Gadget for repeated measure analysis: jsRepeatedGadget -
    • -
-
-
-
-

-jsmodule 0.5.3

-
-

-Update

-
    -
  • New option: nfactor.limit in regressModule, logisticModule, jsBasicGadget, csvFileInput and FilePsInput -
    • -
-
-
-

-Bug fixes

-
    -

  • regressModule, logisticModule, jsPropensityGadget can deal missing data issue.

    • -

  • csvFileInput, FilePSInput change variable class integer64 to double.

    • -
-
-
-
-

-jsmodule 0.5.2

-
    -
  • Update: Upload Stata .dta format.
    • -
-
-
-

-jsmodule 0.5.1

-
    -
  • Modify tb1module, tb1module2, tb1simple ,tb1simple2: compatible with updated jstable -
    • -
-
-
-

-jsmodule 0.5.0

-
-

-Update

-
    -

  • Add sub-group analysis to regressModule, logisticModule and jsPropensityGadget.

    • -

  • Apply the updated cox2.display function in jstable package to jsPropensityGadget.

    • -
-
-
-

-Typo

-
    -
  • Strata variable in ggpairsModule, ggpairsModule2.
    • -
-
-
-
-

-jsmodule 0.4.9

-
-

-Bug fixes

-
    -

  • IPTW table in tb1simple and tb1simple2 modules.

    • -

  • Kaplan-meier UI in jsPropensityGadget

    • -
-
-
-
-

-jsmodude 0.4.8

-
    -
  • -tb1module and tb1module2 can control the maximum factor levels to include.
    • -
-
-
-

-jsmodule 0.4.6

-
    -
  • Bug fixes : Modules for regression exclude NA when selecting binary variables.
    • -
-
-
-

-jsmodule 0.4.5

-
    -
  • Update : csvFile module can remove empty columns.
    • -
-
-
-

-jsmodule 0.4.4

-
    -
  • Change regression table function to glmshow.display in jstable package.
    • -
-
-
-

-jsmodule 0.4.3

-
-

-New gadget

-
    -
  • -jsPropensityGadget : Propensity score analysis
    • -
-
-
-

-Update

-
    -

  • Excluded non-normal variable selection feature from tb1simple module.

    • -

  • Apply original variable names to label information : csvFileInput & FilePsInput functions.

    • -
-
-
-
-

-jsmodule 0.4.0

-
-

-New module

-
    -
  • -tb1simpleUI, tb1simple, tb1simple2 for propensity score analysis
    • -
-
-
-
-

-jsmodule 0.3.7

-
-

-Bug fixes

-
    -
  • factor variable criteria in csvInput, tb1module and tb1module2 -
    • -
-
-
-
-

-jsmodule 0.3.6

-
-

-New module

-
    -
  • -FilePsInput, FilePs are modules of data input for propensity score calculation.
    • -
-
-
-

-Minor update

-
    -
  • Change default data.table & fread check.names option to TRUE -
    • -
-
-
-
-

-jsmodule 0.3.5

-
-

-New gadget

-
    -
  • -jsBasicGadget : Basic statistics
    • -
-
-
-

-Minor update

-
    -
  • -csvFile changes variable name including / to _ and etc.
    • -
-
-
-

-Bug fixes

-
    -
  • Dependency issue with jstable package
    • -
-
-
-
-

-jsmodule 0.3.1

-
-

-Minor update

-
    -
  • Support sav/sas7bdat formats
    • -
-
-
-

-Bug fixes:

-
    -
  • -tbmoduleUI, tbmoduleUI2 : some error
    • -
-
-
-
-

-jsmodule 0.3.0

-
-

-Bug fixes:

-
    -
  • -tbmoduleUI, tbmoduleUI2 : Apply shapiro.test -
    • -
-
-
-

-New module

-
    -

  • regressModuleUI, regressModule, regressModule2

    • -

  • logisticModuleUI, logisticModule, logisticModule2

    • -

  • ggpairsModuleUI1, ggpairsModuleUI2, ggpairsModule

    • -
-
-
-

-New function

-
    -
  • -regress.display2, logistic.display2 : Regression table for reactive data.
    • -
-
-
-
-

-jsmodule 0.2.5

-
-

-Update

-
    -
  • -csvFile : Add n_ to column names that begin with a number.
    • -
-
-
-

-New module

-
    -
  • -tb1moduleUI2 can deal reactive data -
    • -
-
-
-
-

-jsmodule 0.2.0

-
    -
  • New module: tb1moduleUI, tb1module -
    • -
-
-
-

-jsmodule 0.1.0

-
    -
  • Update: csvFile can deal label information
    • -
-
-
-

-jsmodule 0.0.1

-
    -
  • File upload: csvFileInput, csvFile -
    • -
-
-
- - - -
- - -
- - - - - - - - - diff --git a/docs/pkgdown.css b/docs/pkgdown.css deleted file mode 100644 index c03fb08d..00000000 --- a/docs/pkgdown.css +++ /dev/null @@ -1,236 +0,0 @@ -/* Sticky footer */ - -/** - * Basic idea: https://philipwalton.github.io/solved-by-flexbox/demos/sticky-footer/ - * Details: https://github.com/philipwalton/solved-by-flexbox/blob/master/assets/css/components/site.css - * - * .Site -> body > .container - * .Site-content -> body > .container .row - * .footer -> footer - * - * Key idea seems to be to ensure that .container and __all its parents__ - * have height set to 100% - * - */ - -html, body { - height: 100%; -} - -body > .container { - display: flex; - height: 100%; - flex-direction: column; - - padding-top: 60px; -} - -body > .container .row { - flex: 1 0 auto; -} - -footer { - margin-top: 45px; - padding: 35px 0 36px; - border-top: 1px solid #e5e5e5; - color: #666; - display: flex; - flex-shrink: 0; -} -footer p { - margin-bottom: 0; -} -footer div { - flex: 1; -} -footer .pkgdown { - text-align: right; -} -footer p { - margin-bottom: 0; -} - -img.icon { - float: right; -} - -img { - max-width: 100%; -} - -/* Fix bug in bootstrap (only seen in firefox) */ -summary { - display: list-item; -} - -/* Typographic tweaking ---------------------------------*/ - -.contents .page-header { - margin-top: calc(-60px + 1em); -} - -/* Section anchors ---------------------------------*/ - -a.anchor { - margin-left: -30px; - display:inline-block; - width: 30px; - height: 30px; - visibility: hidden; - - background-image: url(./link.svg); - background-repeat: no-repeat; - background-size: 20px 20px; - background-position: center center; -} - -.hasAnchor:hover a.anchor { - visibility: visible; -} - -@media (max-width: 767px) { - .hasAnchor:hover a.anchor { - visibility: hidden; - } -} - - -/* Fixes for fixed navbar --------------------------*/ - -.contents h1, .contents h2, .contents h3, .contents h4 { - padding-top: 60px; - margin-top: -40px; -} - -/* Static header placement on mobile devices */ -@media (max-width: 767px) { - .navbar-fixed-top { - position: absolute; - } - .navbar { - padding: 0; - } -} - - -/* Sidebar --------------------------*/ - -#sidebar { - margin-top: 30px; -} -#sidebar h2 { - font-size: 1.5em; - margin-top: 1em; -} - -#sidebar h2:first-child { - margin-top: 0; -} - -#sidebar .list-unstyled li { - margin-bottom: 0.5em; -} - -.orcid { - height: 16px; - vertical-align: middle; -} - -/* Reference index & topics ----------------------------------------------- */ - -.ref-index th {font-weight: normal;} - -.ref-index td {vertical-align: top;} -.ref-index .icon {width: 40px;} -.ref-index .alias {width: 40%;} -.ref-index-icons .alias {width: calc(40% - 40px);} -.ref-index .title {width: 60%;} - -.ref-arguments th {text-align: right; padding-right: 10px;} -.ref-arguments th, .ref-arguments td {vertical-align: top;} -.ref-arguments .name {width: 20%;} -.ref-arguments .desc {width: 80%;} - -/* Nice scrolling for wide elements --------------------------------------- */ - -table { - display: block; - overflow: auto; -} - -/* Syntax highlighting ---------------------------------------------------- */ - -pre { - word-wrap: normal; - word-break: normal; - border: 1px solid #eee; -} - -pre, code { - background-color: #f8f8f8; - color: #333; -} - -pre code { - overflow: auto; - word-wrap: normal; - white-space: pre; -} - -pre .img { - margin: 5px 0; -} - -pre .img img { - background-color: #fff; - display: block; - height: auto; -} - -code a, pre a { - color: #375f84; -} - -a.sourceLine:hover { - text-decoration: none; -} - -.fl {color: #1514b5;} -.fu {color: #000000;} /* function */ -.ch,.st {color: #036a07;} /* string */ -.kw {color: #264D66;} /* keyword */ -.co {color: #888888;} /* comment */ - -.message { color: black; font-weight: bolder;} -.error { color: orange; font-weight: bolder;} -.warning { color: #6A0366; font-weight: bolder;} - -/* Clipboard --------------------------*/ - -.hasCopyButton { - position: relative; -} - -.btn-copy-ex { - position: absolute; - right: 0; - top: 0; - visibility: hidden; -} - -.hasCopyButton:hover button.btn-copy-ex { - visibility: visible; -} - -/* mark.js ----------------------------*/ - -mark { - background-color: rgba(255, 255, 51, 0.5); - border-bottom: 2px solid rgba(255, 153, 51, 0.3); - padding: 1px; -} - -/* vertical spacing after htmlwidgets */ -.html-widget { - margin-bottom: 10px; -} diff --git a/docs/pkgdown.js b/docs/pkgdown.js deleted file mode 100644 index eb7e83d2..00000000 --- a/docs/pkgdown.js +++ /dev/null @@ -1,115 +0,0 @@ -/* http://gregfranko.com/blog/jquery-best-practices/ */ -(function($) { - $(function() { - - $("#sidebar") - .stick_in_parent({offset_top: 40}) - .on('sticky_kit:bottom', function(e) { - $(this).parent().css('position', 'static'); - }) - .on('sticky_kit:unbottom', function(e) { - $(this).parent().css('position', 'relative'); - }); - - $('body').scrollspy({ - target: '#sidebar', - offset: 60 - }); - - $('[data-toggle="tooltip"]').tooltip(); - - var cur_path = paths(location.pathname); - var links = $("#navbar ul li a"); - var max_length = -1; - var pos = -1; - for (var i = 0; i < links.length; i++) { - if (links[i].getAttribute("href") === "#") - continue; - // Ignore external links - if (links[i].host !== location.host) - continue; - - var nav_path = paths(links[i].pathname); - - var length = prefix_length(nav_path, cur_path); - if (length > max_length) { - max_length = length; - pos = i; - } - } - - // Add class to parent
  • , and enclosing
  • if in dropdown - if (pos >= 0) { - var menu_anchor = $(links[pos]); - menu_anchor.parent().addClass("active"); - menu_anchor.closest("li.dropdown").addClass("active"); - } - }); - - function paths(pathname) { - var pieces = pathname.split("/"); - pieces.shift(); // always starts with / - - var end = pieces[pieces.length - 1]; - if (end === "index.html" || end === "") - pieces.pop(); - return(pieces); - } - - // Returns -1 if not found - function prefix_length(needle, haystack) { - if (needle.length > haystack.length) - return(-1); - - // Special case for length-0 haystack, since for loop won't run - if (haystack.length === 0) { - return(needle.length === 0 ? 0 : -1); - } - - for (var i = 0; i < haystack.length; i++) { - if (needle[i] != haystack[i]) - return(i); - } - - return(haystack.length); - } - - /* Clipboard --------------------------*/ - - function changeTooltipMessage(element, msg) { - var tooltipOriginalTitle=element.getAttribute('data-original-title'); - element.setAttribute('data-original-title', msg); - $(element).tooltip('show'); - element.setAttribute('data-original-title', tooltipOriginalTitle); - } - - if(ClipboardJS.isSupported()) { - $(document).ready(function() { - var copyButton = ""; - - $(".examples, div.sourceCode").addClass("hasCopyButton"); - - // Insert copy buttons: - $(copyButton).prependTo(".hasCopyButton"); - - // Initialize tooltips: - $('.btn-copy-ex').tooltip({container: 'body'}); - - // Initialize clipboard: - var clipboardBtnCopies = new ClipboardJS('[data-clipboard-copy]', { - text: function(trigger) { - return trigger.parentNode.textContent; - } - }); - - clipboardBtnCopies.on('success', function(e) { - changeTooltipMessage(e.trigger, 'Copied!'); - e.clearSelection(); - }); - - clipboardBtnCopies.on('error', function() { - changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy'); - }); - }); - } -})(window.jQuery || window.$) diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml deleted file mode 100644 index 1dc6ec16..00000000 --- a/docs/pkgdown.yml +++ /dev/null @@ -1,5 +0,0 @@ -pandoc: 2.2.1 -pkgdown: 1.3.0 -pkgdown_sha: ~ -articles: [] - diff --git a/docs/reference/FilePs.html b/docs/reference/FilePs.html deleted file mode 100644 index 06cb2b79..00000000 --- a/docs/reference/FilePs.html +++ /dev/null @@ -1,251 +0,0 @@ - - - - - - - - -FilePs: Shiny module Server for file upload for propensity score matching. — FilePs • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    FilePs: Shiny module Server for file upload for propensity score matching.

    - Source: R/FilePsInput.R - -
    - -
    - -

    Shiny module Server for file upload for propensity score matching.

    - -
    - - 
    FilePs(input, output, session, nfactor.limit = 20)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    nfactor.limit

    nfactor limit to include, Default: 20

    - -

    Value

    - -

    server

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable);library(haven)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       FilePsInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-           tabPanel("Data", withLoader(DTOutput("data"), type="html", loader="loader6")),
-           tabPanel("Matching data", withLoader(DTOutput("matdata"), type="html", loader="loader6")),
-           tabPanel("Label", withLoader(DTOutput("data_label", width = "100%"), type="html", loader="loader6"))
-       ),
-       htmlOutput("naomit")
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   mat.info <- callModule(FilePs, "datafile")
-
-   output$data <- renderDT({
-     mat.info()$data
-   })
-
-   output$matdata <- renderDT({
-     mat.info()$matdata
-   })
-
-   output$label <- renderDT({
-     mat.info()$data.label
-   })
-
-   output$naomit <- renderText({
-     mat.info()$naomit
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/FilePsInput.html b/docs/reference/FilePsInput.html deleted file mode 100644 index fae64848..00000000 --- a/docs/reference/FilePsInput.html +++ /dev/null @@ -1,242 +0,0 @@ - - - - - - - - -FilePsInput: Shiny module UI for file upload for propensity score matching. — FilePsInput • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    FilePsInput: Shiny module UI for file upload for propensity score matching.

    - Source: R/FilePsInput.R - -
    - -
    - -

    Shiny module UI for file upload for propensity score matching.

    - -
    - - 
    FilePsInput(id, label = "Upload data (csv/xlsx/sav/sas7bdat/dta)")
    - -

    Arguments

    - - - - - - - - - - -
    id

    id

    label

    label, Default: 'csv/xlsx/sav/sas7bdat file'

    - -

    Value

    - -

    Shiny UI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable);library(haven)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       FilePsInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-           tabPanel("Data", withLoader(DTOutput("data"), type="html", loader="loader6")),
-           tabPanel("Matching data", withLoader(DTOutput("matdata"), type="html", loader="loader6")),
-           tabPanel("Label", withLoader(DTOutput("data_label", width = "100%"), type="html", loader="loader6"))
-       ),
-       htmlOutput("naomit")
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   mat.info <- callModule(FilePs, "datafile")
-
-   output$data <- renderDT({
-     mat.info()$data
-   })
-
-   output$matdata <- renderDT({
-     mat.info()$matdata
-   })
-
-   output$label <- renderDT({
-     mat.info()$data.label
-   })
-   output$naomit <- renderText({
-     mat.info()$naomit
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/FileRepeated.html b/docs/reference/FileRepeated.html deleted file mode 100644 index aa711398..00000000 --- a/docs/reference/FileRepeated.html +++ /dev/null @@ -1,241 +0,0 @@ - - - - - - - - -FileRepeated: File upload server module for repeated measure analysis. — FileRepeated • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    FileRepeated: File upload server module for repeated measure analysis.

    - Source: R/FileRepeatedInput.R - -
    - -
    - -

    File upload server module for repeated measure analysis.

    - -
    - - 
    FileRepeated(input, output, session, nfactor.limit = 20)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    nfactor.limit

    nfactor limit to include, Default: 20

    - -

    Value

    - -

    server

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       FileRepeatedInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-                   tabPanel("Data", DTOutput("data")),
-                   tabPanel("Label", DTOutput("data_label", width = "100%"))
-                   )
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   data <- callModule(FileRepeated, "datafile")
-
-   output$data <- renderDT({
-     data()$data
-   })
-
-   output$label <- renderDT({
-     data()$label
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/FileRepeatedInput.html b/docs/reference/FileRepeatedInput.html deleted file mode 100644 index 8c4af13e..00000000 --- a/docs/reference/FileRepeatedInput.html +++ /dev/null @@ -1,233 +0,0 @@ - - - - - - - - -FileRepeatedInput: File upload UI for repeated measure analysis. — FileRepeatedInput • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    FileRepeatedInput: File upload UI for repeated measure analysis.

    - Source: R/FileRepeatedInput.R - -
    - -
    - -

    File upload UI for repeated measure analysis.

    - -
    - - 
    FileRepeatedInput(id, label = "Upload data (csv/xlsx/sav/sas7bdat/dta)")
    - -

    Arguments

    - - - - - - - - - - -
    id

    id

    label

    label, Default: 'csv/xlsx/sav/sas7bdat/dta file'

    - -

    Value

    - -

    Shiny UI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       FileRepeatedInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-                   tabPanel("Data", DTOutput("data")),
-                   tabPanel("Label", DTOutput("data_label", width = "100%"))
-                   )
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   data <- callModule(FileRepeated, "datafile")
-
-   output$data <- renderDT({
-     data()$data
-   })
-
-   output$label <- renderDT({
-     data()$label
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/FileSurvey.html b/docs/reference/FileSurvey.html deleted file mode 100644 index 9dbfcf02..00000000 --- a/docs/reference/FileSurvey.html +++ /dev/null @@ -1,241 +0,0 @@ - - - - - - - - -FileSurvey: File upload server module for survey data analysis. — FileSurvey • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    FileSurvey: File upload server module for survey data analysis.

    - Source: R/FileSurveyInput.R - -
    - -
    - -

    File upload server module for survey data analysis.

    - -
    - - 
    FileSurvey(input, output, session, nfactor.limit = 20)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    nfactor.limit

    nfactor limit to include, Default: 20

    - -

    Value

    - -

    server

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       FileSurveyInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-                   tabPanel("Data", DTOutput("data")),
-                   tabPanel("Label", DTOutput("data_label", width = "100%"))
-                   )
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   data <- callModule(FileSurvey, "datafile")
-
-   output$data <- renderDT({
-     data()$data
-   })
-
-   output$label <- renderDT({
-     data()$label
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/FileSurveyInput.html b/docs/reference/FileSurveyInput.html deleted file mode 100644 index 429d8db4..00000000 --- a/docs/reference/FileSurveyInput.html +++ /dev/null @@ -1,233 +0,0 @@ - - - - - - - - -FileSurveyInput: File upload UI for survey data analysis. — FileSurveyInput • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    FileSurveyInput: File upload UI for survey data analysis.

    - Source: R/FileSurveyInput.R - -
    - -
    - -

    File upload UI for survey data analysis.

    - -
    - - 
    FileSurveyInput(id, label = "Upload data (csv/xlsx/sav/sas7bdat/dta)")
    - -

    Arguments

    - - - - - - - - - - -
    id

    id

    label

    label, Default: 'csv/xlsx/sav/sas7bdat/dta file'

    - -

    Value

    - -

    Shiny UI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       FileSurveyInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-                   tabPanel("Data", DTOutput("data")),
-                   tabPanel("Label", DTOutput("data_label", width = "100%"))
-                   )
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   data <- callModule(FileSurvey, "datafile")
-
-   output$data <- renderDT({
-     data()$data
-   })
-
-   output$label <- renderDT({
-     data()$label
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/GEEModuleLinear.html b/docs/reference/GEEModuleLinear.html deleted file mode 100644 index b42567c7..00000000 --- a/docs/reference/GEEModuleLinear.html +++ /dev/null @@ -1,231 +0,0 @@ - - - - - - - - -GEEModuleLinear: Module for linear GEE using reactive data — GEEModuleLinear • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    GEEModuleLinear: Module for linear GEE using reactive data

    - Source: R/gee.R - -
    - -
    - -

    Module for linear GEE using reactive data

    - -
    - - 
    GEEModuleLinear(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, id.gee)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data, ordered by id.

    data_label

    reactive data_label

    data_varStruct

    data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    id.gee

    reactive repeated measure variable

    - -

    Value

    - -

    GEEModuleLinear

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/GEEModuleLogistic.html b/docs/reference/GEEModuleLogistic.html deleted file mode 100644 index 3fb63592..00000000 --- a/docs/reference/GEEModuleLogistic.html +++ /dev/null @@ -1,231 +0,0 @@ - - - - - - - - -GEEModuleLogistic: Module for logistic GEE using reactive data — GEEModuleLogistic • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    GEEModuleLogistic: Module for logistic GEE using reactive data

    - Source: R/gee.R - -
    - -
    - -

    Module for logistic GEE using reactive data

    - -
    - - 
    GEEModuleLogistic(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, id.gee)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data, ordered by id.

    data_label

    reactive data_label

    data_varStruct

    data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    id.gee

    reactive repeated measure variable

    - -

    Value

    - -

    GEEModuleLogistic

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/GEEModuleUI.html b/docs/reference/GEEModuleUI.html deleted file mode 100644 index 61bb1896..00000000 --- a/docs/reference/GEEModuleUI.html +++ /dev/null @@ -1,202 +0,0 @@ - - - - - - - - -GEEModuleUI: ModuleUI for GEE — GEEModuleUI • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    GEEModuleUI: ModuleUI for GEE

    - Source: R/gee.R - -
    - -
    - -

    ModuleUI for GEE

    - -
    - - 
    GEEModuleUI(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    GEEModuleUI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/coxModule.html b/docs/reference/coxModule.html deleted file mode 100644 index 2fd6fd19..00000000 --- a/docs/reference/coxModule.html +++ /dev/null @@ -1,240 +0,0 @@ - - - - - - - - -coxModule: Module for cox model — coxModule • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    coxModule: Module for cox model

    - Source: R/coxph.R - -
    - -
    - -

    Module for cox model

    - -
    - - 
    coxModule(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL,
-  default.unires = T, id.cluster = NULL)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data

    data_label

    reactuve data_label

    data_varStruct

    reactive data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    design.survey

    reactive survey data. default: NULL

    default.unires

    Set default independent variables using univariate analysis.

    id.cluster

    reactive cluster variable if marginal cox model, Default: NULL

    - -

    Value

    - -

    regressModule

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/coxUI.html b/docs/reference/coxUI.html deleted file mode 100644 index 78d5e44b..00000000 --- a/docs/reference/coxUI.html +++ /dev/null @@ -1,202 +0,0 @@ - - - - - - - - -coxUI: ModuleUI for cox model — coxUI • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    coxUI: ModuleUI for cox model

    - Source: R/coxph.R - -
    - -
    - -

    ModuleUI for cox model

    - -
    - - 
    coxUI(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    coxUI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/csvFile.html b/docs/reference/csvFile.html deleted file mode 100644 index 38ff602d..00000000 --- a/docs/reference/csvFile.html +++ /dev/null @@ -1,241 +0,0 @@ - - - - - - - - -csvFile: Shiny module Server for file upload. — csvFile • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    csvFile: Shiny module Server for file upload.

    - Source: R/csvFileInput.R - -
    - -
    - -

    Shiny module Server for file(csv or xlsx) upload.

    - -
    - - 
    csvFile(input, output, session, nfactor.limit = 20)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    nfactor.limit

    nfactor limit to include, Default: 20

    - -

    Value

    - -

    server

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       csvFileInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-                   tabPanel("Data", DTOutput("data")),
-                   tabPanel("Label", DTOutput("data_label", width = "100%"))
-                   )
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   data <- callModule(csvFile, "datafile")
-
-   output$data <- renderDT({
-     data()$data
-   })
-
-   output$label <- renderDT({
-     data()$label
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/csvFileInput.html b/docs/reference/csvFileInput.html deleted file mode 100644 index 05ec82cd..00000000 --- a/docs/reference/csvFileInput.html +++ /dev/null @@ -1,233 +0,0 @@ - - - - - - - - -csvFileInput: Shiny module UI for file upload. — csvFileInput • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    csvFileInput: Shiny module UI for file upload.

    - Source: R/csvFileInput.R - -
    - -
    - -

    Shiny module UI for file(csv or xlsx) upload.

    - -
    - - 
    csvFileInput(id, label = "Upload data (csv/xlsx/sav/sas7bdat/dta)")
    - -

    Arguments

    - - - - - - - - - - -
    id

    id

    label

    label, Default: 'csv/xlsx/sav/sas7bdat/dta file'

    - -

    Value

    - -

    Shiny UI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(DT);library(data.table);library(readxl);library(jstable)
- ui <- fluidPage(
-   sidebarLayout(
-     sidebarPanel(
-       csvFileInput("datafile")
-     ),
-     mainPanel(
-       tabsetPanel(type = "pills",
-                   tabPanel("Data", DTOutput("data")),
-                   tabPanel("Label", DTOutput("data_label", width = "100%"))
-                   )
-     )
-   )
- )
-
- server <- function(input, output, session) {
-   data <- callModule(csvFile, "datafile")
-
-   output$data <- renderDT({
-     data()$data
-   })
-
-   output$label <- renderDT({
-     data()$label
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/ggpairsModule.html b/docs/reference/ggpairsModule.html deleted file mode 100644 index df65c77a..00000000 --- a/docs/reference/ggpairsModule.html +++ /dev/null @@ -1,223 +0,0 @@ - - - - - - - - -ggpairsModule: ggpairs module — ggpairsModule • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    ggpairsModule: ggpairs module

    - Source: R/ggpairs.R - -
    - -
    - -

    ggpairs module

    - -
    - - 
    ggpairsModule(input, output, session, data, data_label,
-  data_varStruct = NULL)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    data

    data_label

    data_label

    data_varStruct

    data_varStruct, Default: NULL

    - -

    Value

    - -

    ggpairsModule

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/ggpairsModule2.html b/docs/reference/ggpairsModule2.html deleted file mode 100644 index 30210d26..00000000 --- a/docs/reference/ggpairsModule2.html +++ /dev/null @@ -1,223 +0,0 @@ - - - - - - - - -ggpairsModule2: ggpairs module for reactive data — ggpairsModule2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    ggpairsModule2: ggpairs module for reactive data

    - Source: R/ggpairs.R - -
    - -
    - -

    ggpairs module for reactive data

    - -
    - - 
    ggpairsModule2(input, output, session, data, data_label,
-  data_varStruct = NULL)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data

    data_label

    reactive data_label

    data_varStruct

    data_varStruct, Default: NULL

    - -

    Value

    - -

    ggpairsModule2

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/ggpairsModuleUI1.html b/docs/reference/ggpairsModuleUI1.html deleted file mode 100644 index 33c78b76..00000000 --- a/docs/reference/ggpairsModuleUI1.html +++ /dev/null @@ -1,202 +0,0 @@ - - - - - - - - -ggpairsModuleUI1: Variable selection module UI for ggpairs — ggpairsModuleUI1 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    ggpairsModuleUI1: Variable selection module UI for ggpairs

    - Source: R/ggpairs.R - -
    - -
    - -

    Variable selection module UI for ggpairs

    - -
    - - 
    ggpairsModuleUI1(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    ggpairsModuleUI1

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/ggpairsModuleUI2.html b/docs/reference/ggpairsModuleUI2.html deleted file mode 100644 index 3e7fe8dd..00000000 --- a/docs/reference/ggpairsModuleUI2.html +++ /dev/null @@ -1,202 +0,0 @@ - - - - - - - - -ggpairsModuleUI2: Option & download module UI for ggpairs — ggpairsModuleUI2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    ggpairsModuleUI2: Option & download module UI for ggpairs

    - Source: R/ggpairs.R - -
    - -
    - -

    Option & download module UI for ggpairs

    - -
    - - 
    ggpairsModuleUI2(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    ggpairsModuleUI2

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/ggplotdownUI.html b/docs/reference/ggplotdownUI.html deleted file mode 100644 index c9412dd8..00000000 --- a/docs/reference/ggplotdownUI.html +++ /dev/null @@ -1,202 +0,0 @@ - - - - - - - - -ggplotdownUI: Option & download module UI for ggplot — ggplotdownUI • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    ggplotdownUI: Option & download module UI for ggplot

    - Source: R/kaplan.R - -
    - -
    - -

    Option & download module UI for ggplot

    - -
    - - 
    ggplotdownUI(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    ggplotdownUI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/index.html b/docs/reference/index.html deleted file mode 100644 index b542ca5c..00000000 --- a/docs/reference/index.html +++ /dev/null @@ -1,435 +0,0 @@ - - - - - - - - -Function reference • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    Reference

    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -

    All functions

    -

    -
    -

    FilePs()

    -

    FilePs: Shiny module Server for file upload for propensity score matching.

    -

    FilePsInput()

    -

    FilePsInput: Shiny module UI for file upload for propensity score matching.

    -

    FileRepeated()

    -

    FileRepeated: File upload server module for repeated measure analysis.

    -

    FileRepeatedInput()

    -

    FileRepeatedInput: File upload UI for repeated measure analysis.

    -

    FileSurvey()

    -

    FileSurvey: File upload server module for survey data analysis.

    -

    FileSurveyInput()

    -

    FileSurveyInput: File upload UI for survey data analysis.

    -

    GEEModuleLinear()

    -

    GEEModuleLinear: Module for linear GEE using reactive data

    -

    GEEModuleLogistic()

    -

    GEEModuleLogistic: Module for logistic GEE using reactive data

    -

    GEEModuleUI()

    -

    GEEModuleUI: ModuleUI for GEE

    -

    coxModule()

    -

    coxModule: Module for cox model

    -

    coxUI()

    -

    coxUI: ModuleUI for cox model

    -

    csvFile()

    -

    csvFile: Shiny module Server for file upload.

    -

    csvFileInput()

    -

    csvFileInput: Shiny module UI for file upload.

    -

    ggpairsModule()

    -

    ggpairsModule: ggpairs module

    -

    ggpairsModule2()

    -

    ggpairsModule2: ggpairs module for reactive data

    -

    ggpairsModuleUI1()

    -

    ggpairsModuleUI1: Variable selection module UI for ggpairs

    -

    ggpairsModuleUI2()

    -

    ggpairsModuleUI2: Option & download module UI for ggpairs

    -

    ggplotdownUI()

    -

    ggplotdownUI: Option & download module UI for ggplot

    -

    jsBasicAddin()

    -

    jsBasicAddin: Rstudio addin of jsBasicGadget

    -

    jsBasicGadget()

    -

    jsBasicGadget: Shiny Gadget of Basic Statistics in Medical Research.

    -

    jsPropensityAddin()

    -

    jsPropensityAddin: Rstudio addin of jsPropensityGadget

    -

    jsPropensityGadget()

    -

    jsPropensityGadget: Shiny Gadget for propensity score analysis.

    -

    jsRepeatedAddin()

    -

    jsRepeatedAddin: Rstudio addin of jsRepeatedGadjet

    -

    jsRepeatedGadjet()

    -

    jsRepeatedGadjet: Shiny Gadget of Repeated measure analysis.

    -

    jsSurveyGadget()

    -

    jsSurveyGadget: Shiny Gadget of survey data analysis.

    -

    jsSurveydAddin()

    -

    jsSurveydAddin: Rstudio addin of jsSurveyGadget

    -

    kaplanModule()

    -

    kaplanModule: Module for kaplan-meier plot

    -

    kaplanUI()

    -

    kaplanUI: ModuleUI for kaplan-meier plot

    -

    logistic.display2()

    -

    logistic.display2: Modified epiDisplay's logistic.display function.

    -

    logisticModule()

    -

    logisticModule: Module for logistic regression

    -

    logisticModule2()

    -

    logisticModule2: Module for logistic regression using reactive data

    -

    mklist()

    -

    mklist: make intersect varlist

    -

    mksetdiff()

    -

    mksetdiff: make setdiff varlist

    -

    regress.display2()

    -

    regress.display2: modified epiDisplay's regress.display function

    -

    regressModule()

    -

    regressModule: Module for linear regression

    -

    regressModule2()

    -

    regressModule2: Module for linear regression using reactive data

    -

    regressModuleUI()

    -

    regressModuleUI: ModuleUI for regression

    -

    tb1module()

    -

    tb1module: Shiny module Server for Table 1.

    -

    tb1module2()

    -

    tb1module2: Shiny module Server for Table 1 using reactive data.

    -

    tb1moduleUI()

    -

    tb1moduleUI: Shiny module UI for Table 1.

    -

    tb1simple()

    -

    tb1simple: tb1 module for propensity score analysis

    -

    tb1simple2()

    -

    tb1simple2: tb1 module for propensity score analysis for reactive data

    -

    tb1simpleUI()

    -

    tb1simpleUI : tb1 module UI for propensity score analysis

    -
    - - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsBasicAddin.html b/docs/reference/jsBasicAddin.html deleted file mode 100644 index 339b6acc..00000000 --- a/docs/reference/jsBasicAddin.html +++ /dev/null @@ -1,198 +0,0 @@ - - - - - - - - -jsBasicAddin: Rstudio addin of jsBasicGadget — jsBasicAddin • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsBasicAddin: Rstudio addin of jsBasicGadget

    - Source: R/jsBasicGadget.R - -
    - -
    - -

    Rstudio addin of jsBasicGadget

    - -
    - - 
    jsBasicAddin()
    - -

    Value

    - -

    Rstudio addin of jsBasicGadget

    - -

    Details

    - -

    DETAILS

    - -

    See also

    - -

    rstudio-editors

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsBasicGadget.html b/docs/reference/jsBasicGadget.html deleted file mode 100644 index 145fe921..00000000 --- a/docs/reference/jsBasicGadget.html +++ /dev/null @@ -1,207 +0,0 @@ - - - - - - - - -jsBasicGadget: Shiny Gadget of Basic Statistics in Medical Research. — jsBasicGadget • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsBasicGadget: Shiny Gadget of Basic Statistics in Medical Research.

    - Source: R/jsBasicGadget.R - -
    - -
    - -

    Shiny Gadget including Data, Label info, Table 1, Regression(linear, logistic), Basic plot

    - -
    - - 
    jsBasicGadget(data, nfactor.limit = 20)
    - -

    Arguments

    - - - - - - - - - - -
    data

    data

    nfactor.limit

    nlevels limit for categorical variables

    - -

    Value

    - -

    Shiny Gadget including Data, Label info, Table 1, Regression(linear, logistic), Basic plot

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(survival)
- jsBasicGadget(lung)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsPropensityAddin.html b/docs/reference/jsPropensityAddin.html deleted file mode 100644 index df3cf124..00000000 --- a/docs/reference/jsPropensityAddin.html +++ /dev/null @@ -1,198 +0,0 @@ - - - - - - - - -jsPropensityAddin: Rstudio addin of jsPropensityGadget — jsPropensityAddin • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsPropensityAddin: Rstudio addin of jsPropensityGadget

    - Source: R/jsPropensityGadget.R - -
    - -
    - -

    Rstudio addin of jsPropensityGadget

    - -
    - - 
    jsPropensityAddin()
    - -

    Value

    - -

    Rstudio addin of jsPropensityGadget

    - -

    Details

    - -

    DETAILS

    - -

    See also

    - -

    rstudio-editors

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsPropensityGadget.html b/docs/reference/jsPropensityGadget.html deleted file mode 100644 index 3e8c8db6..00000000 --- a/docs/reference/jsPropensityGadget.html +++ /dev/null @@ -1,214 +0,0 @@ - - - - - - - - -jsPropensityGadget: Shiny Gadget for propensity score analysis. — jsPropensityGadget • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsPropensityGadget: Shiny Gadget for propensity score analysis.

    - Source: R/jsPropensityGadget.R - -
    - -
    - -

    Shiny Gadget for propensity score analysis.

    - -
    - - 
    jsPropensityGadget(data)
    - -

    Arguments

    - - - - - - -
    data

    data

    - -

    Value

    - -

    Gadget

    - -

    Details

    - -

    DETAILS

    - -

    See also

    - -

    data.table - matchit,match.data - cox2.display,svycox.display - survfit,coxph,Surv - jskm,svyjskm - ggsave - svykm

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- jsPropensityGadget(mtcars)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsRepeatedAddin.html b/docs/reference/jsRepeatedAddin.html deleted file mode 100644 index c1a8eb11..00000000 --- a/docs/reference/jsRepeatedAddin.html +++ /dev/null @@ -1,198 +0,0 @@ - - - - - - - - -jsRepeatedAddin: Rstudio addin of jsRepeatedGadjet — jsRepeatedAddin • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsRepeatedAddin: Rstudio addin of jsRepeatedGadjet

    - Source: R/jsRepeatedGadget.R - -
    - -
    - -

    Rstudio addin of jsRepeatedGadjet

    - -
    - - 
    jsRepeatedAddin()
    - -

    Value

    - -

    Rstudio addin of jsRepeatedGadjet

    - -

    Details

    - -

    DETAILS

    - -

    See also

    - -

    rstudio-editors

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsRepeatedGadjet.html b/docs/reference/jsRepeatedGadjet.html deleted file mode 100644 index add18319..00000000 --- a/docs/reference/jsRepeatedGadjet.html +++ /dev/null @@ -1,207 +0,0 @@ - - - - - - - - -jsRepeatedGadjet: Shiny Gadget of Repeated measure analysis. — jsRepeatedGadjet • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsRepeatedGadjet: Shiny Gadget of Repeated measure analysis.

    - Source: R/jsRepeatedGadget.R - -
    - -
    - -

    Shiny Gadget including Data, Label info, Table 1, GEE(linear, logistic), Basic plot

    - -
    - - 
    jsRepeatedGadjet(data, nfactor.limit = 20)
    - -

    Arguments

    - - - - - - - - - - -
    data

    data

    nfactor.limit

    nlevels limit for categorical variables

    - -

    Value

    - -

    Shiny Gadget including Data, Label info, Table 1, GEE(linear, logistic), Basic plot

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(survival)
- jsRepeatedGadjet(lung)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsSurveyGadget.html b/docs/reference/jsSurveyGadget.html deleted file mode 100644 index 0426f25e..00000000 --- a/docs/reference/jsSurveyGadget.html +++ /dev/null @@ -1,207 +0,0 @@ - - - - - - - - -jsSurveyGadget: Shiny Gadget of survey data analysis. — jsSurveyGadget • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsSurveyGadget: Shiny Gadget of survey data analysis.

    - Source: R/jsSurveyGadget.R - -
    - -
    - -

    Shiny Gadget including Data, Label info, Table 1, svyglm, Basic plot

    - -
    - - 
    jsSurveyGadget(data, nfactor.limit = 20)
    - -

    Arguments

    - - - - - - - - - - -
    data

    data

    nfactor.limit

    nlevels limit for categorical variables

    - -

    Value

    - -

    Shiny Gadget including Data, Label info, Table 1, svyglm, Basic plot

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(survival)
- jsSurveyGadget(lung)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/jsSurveydAddin.html b/docs/reference/jsSurveydAddin.html deleted file mode 100644 index 94a80e33..00000000 --- a/docs/reference/jsSurveydAddin.html +++ /dev/null @@ -1,198 +0,0 @@ - - - - - - - - -jsSurveydAddin: Rstudio addin of jsSurveyGadget — jsSurveydAddin • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    jsSurveydAddin: Rstudio addin of jsSurveyGadget

    - Source: R/jsSurveyGadget.R - -
    - -
    - -

    Rstudio addin of jsSurveyGadget

    - -
    - - 
    jsSurveydAddin()
    - -

    Value

    - -

    Rstudio addin of jsSurveyGadget

    - -

    Details

    - -

    DETAILS

    - -

    See also

    - -

    rstudio-editors

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/kaplanModule.html b/docs/reference/kaplanModule.html deleted file mode 100644 index 23070cf5..00000000 --- a/docs/reference/kaplanModule.html +++ /dev/null @@ -1,236 +0,0 @@ - - - - - - - - -kaplanModule: Module for kaplan-meier plot — kaplanModule • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    kaplanModule: Module for kaplan-meier plot

    - Source: R/kaplan.R - -
    - -
    - -

    Module for kaplan-meier plot

    - -
    - - 
    kaplanModule(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL,
-  id.cluster = NULL)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data

    data_label

    reactuve data_label

    data_varStruct

    reactive data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    design.survey

    reactive survey data. default: NULL

    id.cluster

    reactive cluster variable if marginal model, Default: NULL

    - -

    Value

    - -

    kaplanModule

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/kaplanUI.html b/docs/reference/kaplanUI.html deleted file mode 100644 index c93afb24..00000000 --- a/docs/reference/kaplanUI.html +++ /dev/null @@ -1,202 +0,0 @@ - - - - - - - - -kaplanUI: ModuleUI for kaplan-meier plot — kaplanUI • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    kaplanUI: ModuleUI for kaplan-meier plot

    - Source: R/kaplan.R - -
    - -
    - -

    ModuleUI for kaplan-meier plot

    - -
    - - 
    kaplanUI(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    kaplanUI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/logistic.display2.html b/docs/reference/logistic.display2.html deleted file mode 100644 index 696be91b..00000000 --- a/docs/reference/logistic.display2.html +++ /dev/null @@ -1,223 +0,0 @@ - - - - - - - - -logistic.display2: Modified epiDisplay's logistic.display function. — logistic.display2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    logistic.display2: Modified epiDisplay's logistic.display function.

    - Source: R/display2.R - -
    - -
    - -

    Modified epiDisplay's logistic.display function for reactive data.

    - -
    - - 
    logistic.display2(logistic.model, alpha = 0.05, crude = TRUE,
-  crude.p.value = FALSE, decimal = 2, simplified = FALSE)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - -
    logistic.model

    glm object(binomial)

    alpha

    alpha, Default: 0.05

    crude

    crude, Default: TRUE

    crude.p.value

    crude.p.value, Default: FALSE

    decimal

    decimal, Default: 2

    simplified

    simplified, Default: FALSE

    - -

    Value

    - -

    logistic table

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/logisticModule.html b/docs/reference/logisticModule.html deleted file mode 100644 index 8b9c8516..00000000 --- a/docs/reference/logisticModule.html +++ /dev/null @@ -1,236 +0,0 @@ - - - - - - - - -logisticModule: Module for logistic regression — logisticModule • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    logisticModule: Module for logistic regression

    - Source: R/regress.R - -
    - -
    - -

    Module for logistic regression

    - -
    - - 
    logisticModule(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL,
-  default.unires = T)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    data

    data_label

    data_label

    data_varStruct

    data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    design.survey

    survey data. default: NULL

    default.unires

    Set default independent variables using univariate analysis.

    - -

    Value

    - -

    logisticModule

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/logisticModule2.html b/docs/reference/logisticModule2.html deleted file mode 100644 index fa61568e..00000000 --- a/docs/reference/logisticModule2.html +++ /dev/null @@ -1,236 +0,0 @@ - - - - - - - - -logisticModule2: Module for logistic regression using reactive data — logisticModule2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    logisticModule2: Module for logistic regression using reactive data

    - Source: R/regress.R - -
    - -
    - -

    Module for logistic regression using reactive data

    - -
    - - 
    logisticModule2(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL,
-  default.unires = T)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data

    data_label

    reactive data_label

    data_varStruct

    data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    design.survey

    survey data. default: NULL

    default.unires

    Set default independent variables using univariate analysis.

    - -

    Value

    - -

    logisticModule2

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/mklist.html b/docs/reference/mklist.html deleted file mode 100644 index e4781ec6..00000000 --- a/docs/reference/mklist.html +++ /dev/null @@ -1,207 +0,0 @@ - - - - - - - - -mklist: make intersect varlist — mklist • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    mklist: make intersect varlist

    - Source: R/regress.R - -
    - -
    - -

    make intersect varlist

    - -
    - - 
    mklist(varlist, vars)
    - -

    Arguments

    - - - - - - - - - - -
    varlist

    varlist

    vars

    vars

    - -

    Value

    - -

    Intersect varlist

    - -

    Details

    - -

    Internal function

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- data_varStruct = list(variable = names(data))
- conti_list <- mklist(data_varStruct, conti_vars)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/mksetdiff.html b/docs/reference/mksetdiff.html deleted file mode 100644 index 764e5c8d..00000000 --- a/docs/reference/mksetdiff.html +++ /dev/null @@ -1,206 +0,0 @@ - - - - - - - - -mksetdiff: make setdiff varlist — mksetdiff • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    mksetdiff: make setdiff varlist

    - Source: R/regress.R - -
    - -
    - -

    make setdiff varlist

    - -
    - - 
    mksetdiff(varlist, vars)
    - -

    Arguments

    - - - - - - - - - - -
    varlist

    varlist

    vars

    vars

    - -

    Value

    - -

    Setdiff varlist

    - -

    Details

    - -

    Internal function

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- # exam
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/regress.display2.html b/docs/reference/regress.display2.html deleted file mode 100644 index 0653bd83..00000000 --- a/docs/reference/regress.display2.html +++ /dev/null @@ -1,223 +0,0 @@ - - - - - - - - -regress.display2: modified epiDisplay's regress.display function — regress.display2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    regress.display2: modified epiDisplay's regress.display function

    - Source: R/display2.R - -
    - -
    - -

    regress.display function for reactive data

    - -
    - - 
    regress.display2(regress.model, alpha = 0.05, crude = FALSE,
-  crude.p.value = FALSE, decimal = 2, simplified = FALSE)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - -
    regress.model

    lm object

    alpha

    alpha, Default: 0.05

    crude

    crude, Default: FALSE

    crude.p.value

    crude.p.value, Default: FALSE

    decimal

    decimal, Default: 2

    simplified

    simplified, Default: FALSE

    - -

    Value

    - -

    regress table

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/regressModule.html b/docs/reference/regressModule.html deleted file mode 100644 index 236233ff..00000000 --- a/docs/reference/regressModule.html +++ /dev/null @@ -1,236 +0,0 @@ - - - - - - - - -regressModule: Module for linear regression — regressModule • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    regressModule: Module for linear regression

    - Source: R/regress.R - -
    - -
    - -

    Module for linear regression

    - -
    - - 
    regressModule(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL,
-  default.unires = T)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    data

    data_label

    data_label

    data_varStruct

    data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    design.survey

    survey data. default: NULL

    default.unires

    Set default independent variables using univariate analysis.

    - -

    Value

    - -

    regressModule

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/regressModule2.html b/docs/reference/regressModule2.html deleted file mode 100644 index 6966cb2a..00000000 --- a/docs/reference/regressModule2.html +++ /dev/null @@ -1,236 +0,0 @@ - - - - - - - - -regressModule2: Module for linear regression using reactive data — regressModule2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    regressModule2: Module for linear regression using reactive data

    - Source: R/regress.R - -
    - -
    - -

    Module for linear regression using reactive data

    - -
    - - 
    regressModule2(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL,
-  default.unires = T)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data

    data_label

    reactive data_label

    data_varStruct

    data_varStruct, Default: NULL

    nfactor.limit

    nlevels limit in factor variable, Default: 10

    design.survey

    survey data. default: NULL

    default.unires

    Set default independent variables using univariate analysis.

    - -

    Value

    - -

    regressModule2

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/regressModuleUI.html b/docs/reference/regressModuleUI.html deleted file mode 100644 index 9e3e43f9..00000000 --- a/docs/reference/regressModuleUI.html +++ /dev/null @@ -1,202 +0,0 @@ - - - - - - - - -regressModuleUI: ModuleUI for regression — regressModuleUI • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    regressModuleUI: ModuleUI for regression

    - Source: R/regress.R - -
    - -
    - -

    ModuleUI for regression

    - -
    - - 
    regressModuleUI(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    regressModuleUI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/tb1module.html b/docs/reference/tb1module.html deleted file mode 100644 index dcc7b0a7..00000000 --- a/docs/reference/tb1module.html +++ /dev/null @@ -1,270 +0,0 @@ - - - - - - - - -tb1module: Shiny module Server for Table 1. — tb1module • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    tb1module: Shiny module Server for Table 1.

    - Source: R/tb1.R - -
    - -
    - -

    Shiny module Server for Table 1.

    - -
    - - 
    tb1module(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    data

    data_label

    data label

    data_varStruct

    Variable structure list of data, Default: NULL

    nfactor.limit

    maximum factor levels to include, Default: 10

    design.survey

    survey data. default: NULL

    - -

    Value

    - -

    Shiny module

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(data.table);library(DT)
- library(jstable);library(shinycustomloader);library(tableone);library(labelled)
- data = data.table(mtcars)
- data$vs = as.factor(data$vs)
- data$am = as.factor(data$am)
- data$cyl = as.factor(data$cyl)
- data.label = mk.lev(data)
-
- ui <- fluidPage(
- sidebarLayout(
-   sidebarPanel(
-     tb1moduleUI("tb1")
-   ),
-   mainPanel(
-     withLoader(DTOutput("table1"), type="html", loader="loader6"),
-   )
- )
- )
-
- server <- function(input, output, session) {
-   out_tb1 <- callModule(tb1module, "tb1",
-                         data = data, data_label = data.label, data_varStruct = NULL)
-   output$table1 <- renderDT({
-     tb = out_tb1()$table
-     cap = out_tb1()$caption
-     out.tb1 = datatable(tb, rownames = T, extension= "Buttons", caption = cap,
-                         options = c(opt.tb1("tb1"),
-                                     list(columnDefs = list(list(visible=FALSE, targets= which(colnames(tb) %in% c("test","sig"))))
-                                     ),
-                                     list(scrollX = TRUE)
-                         )
-     )
-     if ("sig" %in% colnames(tb)){
-       out.tb1 = out.tb1 %>% formatStyle("sig", target = 'row' ,backgroundColor = styleEqual("**", 'yellow'))
-     }
-     return(out.tb1)
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/tb1module2.html b/docs/reference/tb1module2.html deleted file mode 100644 index 7a7046ca..00000000 --- a/docs/reference/tb1module2.html +++ /dev/null @@ -1,286 +0,0 @@ - - - - - - - - -tb1module2: Shiny module Server for Table 1 using reactive data. — tb1module2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    tb1module2: Shiny module Server for Table 1 using reactive data.

    - Source: R/tb1.R - -
    - -
    - -

    Shiny module Server for Table 1 using reactive data.

    - -
    - - 
    tb1module2(input, output, session, data, data_label,
-  data_varStruct = NULL, nfactor.limit = 10, design.survey = NULL)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    reactive data

    data_label

    reactive data label(reactive)

    data_varStruct

    Variable structure list of data, Default: NULL

    nfactor.limit

    maximum factor levels to include, Default: 10

    design.survey

    Survey data. default: NULL

    - -

    Value

    - -

    Shiny module

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(data.table);library(DT)
- library(jstable);library(shinycustomloader);library(tableone);library(labelled)
-
- ui <- navbarPage("Basic statistics",
- tabPanel("Data",
-          sidebarLayout(
-            sidebarPanel(
-              csvFileInput("datafile")
-            ),
-            mainPanel(
-              tabsetPanel(type = "pills",
-                          tabPanel("Data", withLoader(DTOutput("data"), type="html", loader="loader6")),
-                          tabPanel("Label", withLoader(DTOutput("data_label", width = "100%"), type="html", loader="loader6"))
-              )
-            )
-          )
- ),
- tabPanel("Table 1",
-          sidebarLayout(
-            sidebarPanel(
-              tb1moduleUI("tb1")
-            ),
-            mainPanel(
-              withLoader(DTOutput("table1"), type="html", loader="loader6"),
-              wellPanel(
-                h5("Normal continuous variables  are summarized with Mean (SD) and t-test(2 groups) or ANOVA(> 2 groups)"),
-                h5("Non-normal continuous variables are summarized with median [IQR] and kruskal-wallis test"),
-                h5("Categorical variables  are summarized with table")
-              )
-            )
-          )
-
- )
- )
-
- server <- function(input, output, session) {
-   out_tb1 <- callModule(tb1module2, "tb1",
-                         data = data, data_label = data.label, data_varStruct = NULL)
-   output$table1 <- renderDT({
-     tb = out_tb1()$table
-     cap = out_tb1()$caption
-     out.tb1 = datatable(tb, rownames = T, extension= "Buttons", caption = cap,
-                         options = c(opt.tb1("tb1"),
-                                     list(columnDefs = list(list(visible=FALSE, targets= which(colnames(tb) %in% c("test","sig"))))
-                                     ),
-                                     list(scrollX = TRUE)
-                         )
-     )
-     if ("sig" %in% colnames(tb)){
-       out.tb1 = out.tb1 %>% formatStyle("sig", target = 'row' ,backgroundColor = styleEqual("**", 'yellow'))
-     }
-     return(out.tb1)
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/tb1moduleUI.html b/docs/reference/tb1moduleUI.html deleted file mode 100644 index 93a92458..00000000 --- a/docs/reference/tb1moduleUI.html +++ /dev/null @@ -1,241 +0,0 @@ - - - - - - - - -tb1moduleUI: Shiny module UI for Table 1. — tb1moduleUI • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    tb1moduleUI: Shiny module UI for Table 1.

    - Source: R/tb1.R - -
    - -
    - -

    Shiny module UI for Table 1.

    - -
    - - 
    tb1moduleUI(id)
    - -

    Arguments

    - - - - - - -
    id

    id

    - -

    Value

    - -

    Shiny UI

    - -

    Details

    - -

    DETAILS

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- library(shiny);library(data.table);library(DT)
- library(jstable);library(shinycustomloader);library(tableone);library(labelled)
- data = data.table(mtcars)
- data$vs = as.factor(data$vs)
- data$am = as.factor(data$am)
- data$cyl = as.factor(data$cyl)
- data.label = mk.lev(data)
-
- ui <- fluidPage(
- sidebarLayout(
-   sidebarPanel(
-     tb1moduleUI("tb1")
-   ),
-   mainPanel(
-     withLoader(DTOutput("table1"), type="html", loader="loader6"),
-   )
- )
- )
-
- server <- function(input, output, session) {
-   out_tb1 <- callModule(tb1module, "tb1", data = data,
-                         data_label = data.label, data_varStruct = NULL)
-   output$table1 <- renderDT({
-     tb = out_tb1()$table
-     cap = out_tb1()$caption
-     out.tb1 = datatable(tb, rownames = T, extension= "Buttons", caption = cap,
-                         options = c(opt.tb1("tb1"),
-                                     list(columnDefs = list(list(visible=FALSE, targets= which(colnames(tb) %in% c("test","sig"))))
-                                     ),
-                                     list(scrollX = TRUE)
-                         )
-     )
-     if ("sig" %in% colnames(tb)){
-       out.tb1 = out.tb1 %>% formatStyle("sig", target = 'row' ,backgroundColor = styleEqual("**", 'yellow'))
-     }
-     return(out.tb1)
-   })
- }
-
- shinyApp(ui, server)
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/tb1simple.html b/docs/reference/tb1simple.html deleted file mode 100644 index 5be05506..00000000 --- a/docs/reference/tb1simple.html +++ /dev/null @@ -1,240 +0,0 @@ - - - - - - - - -tb1simple: tb1 module for propensity score analysis — tb1simple • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    -
    - - - -
    - -
    -
    -
    -

    tb1simple: tb1 module for propensity score analysis

    - Source: R/tb1simple.R - -
    - -
    - -

    tb1 module for propensity score analysis

    - -
    - - 
    tb1simple(input, output, session, data, matdata, data_label,
-  data_varStruct = NULL, group_var)
    - -

    Arguments

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    input

    input

    output

    output

    session

    session

    data

    data

    matdata

    matdata

    data_label

    data_label

    data_varStruct

    data_varStruct, Default: NULL

    group_var

    group_var

    - -

    Value

    - -

    OUTPUT_DESCRIPTION

    - -

    Details

    - -

    DETAILS

    - -

    See also

    - -

    var_label - CreateTableOneJS - svydesign - svyCreateTableOne

    - - -

    Examples

    - 
    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
    -
    - -
    - - -
    - - - - - - - - - diff --git a/docs/reference/tb1simple2.html b/docs/reference/tb1simple2.html deleted file mode 100644 index 8c59071f..00000000 --- a/docs/reference/tb1simple2.html +++ /dev/null @@ -1,243 +0,0 @@ - - - - - - - - -tb1simple2: tb1 module for propensity score analysis for reactive data — tb1simple2 • jsmodule - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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    tb1simple2: tb1 module for propensity score analysis for reactive data

    - Source: R/tb1simple.R - -
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    tb1 module for propensity score analysis

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    tb1simple2(input, output, session, data, matdata, data_label,
-  data_varStruct = NULL, vlist, group_var)
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    Arguments

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    input

    input

    output

    output

    session

    session

    data

    reactive data

    matdata

    reactive matdata

    data_label

    reactive data_label

    data_varStruct

    data_varStruct, Default: NULL

    vlist

    variable lists

    group_var

    reactive group_var

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    Value

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    OUTPUT_DESCRIPTION

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    Details

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    DETAILS

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    See also

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    CreateTableOneJS - svydesign - svyCreateTableOne

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    Examples

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    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
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    tb1simpleUI : tb1 module UI for propensity score analysis

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    tb1 module UI for propensity score analysis

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    tb1simpleUI(id)
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    Arguments

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    id

    id

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    Value

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    UI

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    Details

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    DETAILS

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    Examples

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    # NOT RUN {
-if(interactive()){
- #EXAMPLE1
- }
-# }
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