From 9a8169efac3f44f00eb4ff40183cab5116935d00 Mon Sep 17 00:00:00 2001
From: KatherineCox <katherinecox@jhu.edu>
Date: Thu, 10 Aug 2023 11:08:48 -0400
Subject: [PATCH 1/2] add README template for courses (#667)

---
 .github/course_README_template.md     | 24 +++++++++++++++++++++
 .github/workflows/starting-course.yml |  1 +
 README.md                             | 30 ---------------------------
 3 files changed, 25 insertions(+), 30 deletions(-)
 create mode 100644 .github/course_README_template.md

diff --git a/.github/course_README_template.md b/.github/course_README_template.md
new file mode 100644
index 00000000..1c9ccdf7
--- /dev/null
+++ b/.github/course_README_template.md
@@ -0,0 +1,24 @@
+# {Course Name}
+
+This course was created from [this GitHub template](https://github.com/jhudsl/OTTR_Template).
+
+You can see the rendered course material here: {Link to rendered bookdown and/or to the Leanpub.}
+
+If you would like to contribute to this course material, take a look at the [OTTR documentation](https://www.ottrproject.org/).
+
+## About this course
+
+This course introduces {info on what this course introduces}
+
+## Learning Objectives
+
+This course will teach learners to:  
+
+- {You can use https://www.bobpikegroup.com/trainer-blog/5-steps-to-writing-clear-and-measurable-learning-objectives to define some learning objectives here}
+- {More learning objectives}
+
+## Encountering problems?
+
+If you are encountering any problems with this course, please file a GitHub issue or contact us at {Some email or web address with a contact form}.
+
+<a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png" /></a><br />All materials in this course are licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a> unless noted otherwise.
diff --git a/.github/workflows/starting-course.yml b/.github/workflows/starting-course.yml
index d1683f28..5ded0b20 100644
--- a/.github/workflows/starting-course.yml
+++ b/.github/workflows/starting-course.yml
@@ -30,6 +30,7 @@ jobs:
       - name: Cleanup
         run: |
           # Cleanup
+          mv .github/course_README_template.md README.md
           rm -rf \
             .github/workflows/report-maker.yml \
             .github/workflows/send-updates.yml \
diff --git a/README.md b/README.md
index 743969f3..04db84a6 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,3 @@
-<!--Delete this section below upon using the template-->
-
 ## Open-source Tools for Training Resources - OTTR
 
 Go to [ottrproject.org](https://www.ottrproject.org/) to get started! :tada:
@@ -33,31 +31,3 @@ _This template and guide helps you_:
 - Please take a look at the [code of conduct](./code_of_conduct.md).
 - If you encounter any problems or have ideas for improvements to this template repository or this getting started guide, please [file an issue here](https://github.com/jhudsl/OTTR_Template/issues/new/choose)! Your feedback is very much appreciated.
 
-<!--Delete everything above this line upon using the template-->
-
-# {Course Name}
-
-[![Render Bookdown and Coursera](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml/badge.svg)](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml)
-
-This course was created from [this GitHub template](https://github.com/jhudsl/OTTR_Template).
-
-You can see the rendered course material here: {Link to rendered bookdown and/or to the Leanpub.}
-
-If you would like to contribute to this course material, take a look at the [getting started GitHub wiki pages](https://github.com/jhudsl/OTTR_Template/wiki).
-
-## About this course
-
-This course introduces {info on what this course introduces}
-
-## Learning Objectives
-
-This course will teach learners to:  
-
-- {You can use https://www.bobpikegroup.com/trainer-blog/5-steps-to-writing-clear-and-measurable-learning-objectives to define some learning objectives here}
-- {More learning objectives}
-
-## Encountering problems?
-
-If you are encountering any problems with this course, please file a GitHub issue or contact us at {Some email or web address with a contact form}.
-
-<a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png" /></a><br />All materials in this course are licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a> unless noted otherwise.

From 140f60641b75620c6f0bc7fa594e8bf724b5215d Mon Sep 17 00:00:00 2001
From: "Thomas B. Mooney" <mooney@wustl.edu>
Date: Wed, 20 Sep 2023 12:57:13 -0500
Subject: [PATCH 2/2] Update sync.yml (#665)

Add griffithlab/Immuno_workflow_Course
---
 .github/sync.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/sync.yml b/.github/sync.yml
index e4901723..d0f474ca 100755
--- a/.github/sync.yml
+++ b/.github/sync.yml
@@ -56,6 +56,7 @@ group:
       griffithlab/CIVIC_SVI_Course
       PracticalGenomics/cogaps-on-sciserver
       fhdsl/AI_for_software
+      griffithlab/Immuno_Workflow_Course
 
 ###ADD NEW REPO HERE following the format above#