From ce38bccadd5f488b7b35c159fd72fcc12d4f4181 Mon Sep 17 00:00:00 2001
From: LukasRier <45269525+LukasRier@users.noreply.github.com>
Date: Mon, 12 Dec 2022 11:36:49 +0000
Subject: [PATCH 1/5] Add sandbox option to usage string

add option [-sb] to indicate user is uploading to a zenodo repository in sandbox mode. Positional arguments are not optional and therefore indicated using < >
---
 zenodo_upload.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/zenodo_upload.sh b/zenodo_upload.sh
index 15adfba..2f017d2 100755
--- a/zenodo_upload.sh
+++ b/zenodo_upload.sh
@@ -1,8 +1,8 @@
 #!/bin/bash
 # Upload big files to Zenodo.
 #
-# usage: ./zenodo_upload.sh [deposition id] [filename]
-#
+# usage: ./zenodo_upload.sh [-sb] <deposition id> <filename> 
+# -sb ... upload to zenodo sandbox
 
 set -e
 

From bf3c37f6ded394ddef90a06ad2e8ac211ec30fc9 Mon Sep 17 00:00:00 2001
From: LukasRier <45269525+LukasRier@users.noreply.github.com>
Date: Mon, 12 Dec 2022 12:10:29 +0000
Subject: [PATCH 2/5] Rename sandbox option to s

---
 zenodo_upload.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/zenodo_upload.sh b/zenodo_upload.sh
index 2f017d2..3dd3e6a 100755
--- a/zenodo_upload.sh
+++ b/zenodo_upload.sh
@@ -1,8 +1,8 @@
 #!/bin/bash
 # Upload big files to Zenodo.
 #
-# usage: ./zenodo_upload.sh [-sb] <deposition id> <filename> 
-# -sb ... upload to zenodo sandbox
+# usage: ./zenodo_upload.sh [-s] <deposition id> <filename> 
+# -s ... upload to zenodo sandbox
 
 set -e
 

From 2f3b87905e7528938317a6fd380ca476b11343ec Mon Sep 17 00:00:00 2001
From: LukasRier <45269525+LukasRier@users.noreply.github.com>
Date: Mon, 12 Dec 2022 12:12:11 +0000
Subject: [PATCH 3/5] Option handling

Initialise sandbox string, check for invalid options and reset option index for positional arguments later.
---
 zenodo_upload.sh | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)

diff --git a/zenodo_upload.sh b/zenodo_upload.sh
index 3dd3e6a..8ddce42 100755
--- a/zenodo_upload.sh
+++ b/zenodo_upload.sh
@@ -6,6 +6,22 @@
 
 set -e
 
+SBSTR=""
+
+while getopts "s" opt; do
+    case $opt in
+	    "s") echo "running in sandbox mode" >&2 
+		SBSTR="sandbox."
+		;;
+	     *) echo "Error: invalid option" >&2
+		exit 1
+		;;
+    esac
+done
+# reset option index for positional arguments later
+shift "$(( OPTIND - 1 ))"
+
+
 # strip deposition url prefix if provided; see https://github.com/jhpoelen/zenodo-upload/issues/2#issuecomment-797657717
 DEPOSITION=$( echo $1 | sed 's+^http[s]*://zenodo.org/deposit/++g' )
 FILEPATH="$2"

From f3bb33d82b5b4e0502ae67f2a83f6082addee9cf Mon Sep 17 00:00:00 2001
From: LukasRier <45269525+LukasRier@users.noreply.github.com>
Date: Mon, 12 Dec 2022 12:14:11 +0000
Subject: [PATCH 4/5] Include sandbox string in deposition and bucket

Inlcudes sandbox string (SBSTR) in relevant urls. sandbox.zenodo... if -s is set or leaves the urls unchanged if -s is not set
---
 zenodo_upload.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/zenodo_upload.sh b/zenodo_upload.sh
index 8ddce42..7b3583a 100755
--- a/zenodo_upload.sh
+++ b/zenodo_upload.sh
@@ -23,10 +23,10 @@ shift "$(( OPTIND - 1 ))"
 
 
 # strip deposition url prefix if provided; see https://github.com/jhpoelen/zenodo-upload/issues/2#issuecomment-797657717
-DEPOSITION=$( echo $1 | sed 's+^http[s]*://zenodo.org/deposit/++g' )
+DEPOSITION=$( echo $1 | sed "s+^http[s]*://${SBSTR}zenodo.org/deposit/++g" )
 FILEPATH="$2"
 FILENAME=$(echo $FILEPATH | sed 's+.*/++g')
 
-BUCKET=$(curl https://zenodo.org/api/deposit/depositions/"$DEPOSITION"?access_token="$ZENODO_TOKEN" | jq --raw-output .links.bucket)
+BUCKET=$(curl https://${SBSTR}zenodo.org/api/deposit/depositions/"$DEPOSITION"?access_token="$ZENODO_TOKEN" | jq --raw-output .links.bucket)
 
 curl --progress-bar -o /dev/null --upload-file "$FILEPATH" $BUCKET/"$FILENAME"?access_token="$ZENODO_TOKEN"

From cd4d156506d85adec64a1c67f5de5f85023ef42c Mon Sep 17 00:00:00 2001
From: LukasRier <45269525+LukasRier@users.noreply.github.com>
Date: Mon, 12 Dec 2022 12:37:24 +0000
Subject: [PATCH 5/5] Update to include sandbox option

---
 README.md | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 5e196d1..15371aa 100644
--- a/README.md
+++ b/README.md
@@ -23,8 +23,9 @@ export ZENODO_TOKEN=[Zenodo access token]
 5. in the browser, copy the deposition id (e.g., in ```https://zenodo.org/deposit/12345``` , 12345 is the deposition id)
 6. in terminal and upload a file using
 ```bash
-./zenodo_upload.sh [deposition id] [filename]
+./zenodo_upload.sh [-s] <deposition id> <filename>
 ```
+Including option `-s` will upload the file to ```https://sandbox.zenodo.org/deposit/12346```instead. 
 7. on completion, you should see something like:
 ```shell
 + curl ...