Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

SIMD kmers #8

Open
Tracked by #10
jeff-k opened this issue Dec 19, 2024 · 0 comments
Open
Tracked by #10

SIMD kmers #8

jeff-k opened this issue Dec 19, 2024 · 0 comments

Comments

@jeff-k
Copy link
Owner

jeff-k commented Dec 19, 2024

There are stubs in the module here: https://github.com/jeff-k/bio-seq/blob/main/bio-seq/src/kmer/simd.rs and a simd cfg option to enable it.

To make this useful we'll need to work out:

  • What particular operations will be useful to vectorise
  • Does K need to be a multiple of the lane size to get any benefit?
@jeff-k jeff-k mentioned this issue Dec 20, 2024
Open
9 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@jeff-k