rosetta3_rc

# Copy this file to $HOME/.rosetta3_rc

#.rosetta3_rc
# Environment variables that will make your life in the Graylab easier.  Brian Weitzner 3/28/2011

export rosetta_root=$HOME/Rosetta
export rosetta_scripts=$rosetta_root/rosetta_scripts/docking

export rosetta_R_scripts=$rosetta_scripts/R_scripts_updated
export ROSETTA3_DB=$rosetta_root/rosetta$suffix/rosetta_database

number_of_threads=`hostinfo | grep "logic" | awk '{ print $1 }'`

alias build_rosetta_for_testing="cd $rosetta_root/rosetta/rosetta_source; ./scons.py -j$number_of_threads && ./scons.py -j$number_of_threads cat=test && ./scons.py -j$number_of_threads mode=release bin"

source $rosetta_root/PyRosetta/SetPyRosettaEnvironment.sh

export PATH=$PATH:$PYROSETTA:$rosetta_scripts

export PYROSETTA_DATABASE=$PYROSETTA/rosetta_database
export PYTHONPATH=$PYTHONPATH:$rosetta_root/rosetta_scripts/docking/pdb_scripts

alias make_fragments="$rosetta_root/fragments/executables/make_fragments.pl"
alias make_funnel_plot="R --file=$rosetta_R_scripts/plot_data.R"