diff --git a/06-publication/supplemental_figures/Sup_fig_10/._.DS_Store b/06-publication/supplemental_figures/Sup_fig_10/._.DS_Store
deleted file mode 100644
index b0d28a3..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_10/._.DS_Store and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.pdf b/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.pdf
deleted file mode 100644
index b28524a..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.png b/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.png
deleted file mode 100644
index 49322f2..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.png and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.svg b/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.svg
deleted file mode 100644
index 65e2107..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_10/._Sup_fig_10.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_10/._tf_tree_gubbins_masked.pdf b/06-publication/supplemental_figures/Sup_fig_10/._tf_tree_gubbins_masked.pdf
deleted file mode 100644
index 6e0de34..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_10/._tf_tree_gubbins_masked.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_10/._tf_tree_raxml.pdf b/06-publication/supplemental_figures/Sup_fig_10/._tf_tree_raxml.pdf
deleted file mode 100644
index 9eecdef..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_10/._tf_tree_raxml.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.pdf b/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.pdf
deleted file mode 100644
index b92dfb5..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.png b/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.png
deleted file mode 100644
index d1ce4f2..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.png and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.svg b/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.svg
deleted file mode 100644
index 4e79d6f..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_11/._Sup_fig_11.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_11/._abot439_tree_gubbins_nodes.pdf b/06-publication/supplemental_figures/Sup_fig_11/._abot439_tree_gubbins_nodes.pdf
deleted file mode 100644
index 71e7ee6..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_11/._abot439_tree_gubbins_nodes.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_11/._tf_tree_gubbins_nodes.pdf b/06-publication/supplemental_figures/Sup_fig_11/._tf_tree_gubbins_nodes.pdf
deleted file mode 100644
index fa63a50..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_11/._tf_tree_gubbins_nodes.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_12/._.DS_Store b/06-publication/supplemental_figures/Sup_fig_12/._.DS_Store
deleted file mode 100644
index d752a78..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_12/._.DS_Store and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_14/._Figure_14.svg b/06-publication/supplemental_figures/Sup_fig_14/._Figure_14.svg
deleted file mode 100644
index 6e68117..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_14/._Figure_14.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_15/._Sup_fig_15.png b/06-publication/supplemental_figures/Sup_fig_15/._Sup_fig_15.png
deleted file mode 100644
index 5956a31..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_15/._Sup_fig_15.png and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_15/._Sup_fig_15.svg b/06-publication/supplemental_figures/Sup_fig_15/._Sup_fig_15.svg
deleted file mode 100644
index d34148c..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_15/._Sup_fig_15.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_16/._Sup_fig_16.svg b/06-publication/supplemental_figures/Sup_fig_16/._Sup_fig_16.svg
deleted file mode 100644
index c5833bd..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_16/._Sup_fig_16.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_3/._Supp_fig_3.svg b/06-publication/supplemental_figures/Sup_fig_3/._Supp_fig_3.svg
deleted file mode 100644
index a09f9ea..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_3/._Supp_fig_3.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_4/._Sup_fig_S4.svg b/06-publication/supplemental_figures/Sup_fig_4/._Sup_fig_S4.svg
deleted file mode 100644
index 28dec7d..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_4/._Sup_fig_S4.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.pdf b/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.pdf
deleted file mode 100644
index da0dde4..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.png b/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.png
deleted file mode 100644
index 3b22cbd..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.png and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.svg b/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.svg
deleted file mode 100644
index feeb581..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_5/._Supplemental_Figure_S5.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_5/._gc_rl_continent_stats.pdf b/06-publication/supplemental_figures/Sup_fig_5/._gc_rl_continent_stats.pdf
deleted file mode 100644
index 485e444..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_5/._gc_rl_continent_stats.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_5/._gc_stats.pdf b/06-publication/supplemental_figures/Sup_fig_5/._gc_stats.pdf
deleted file mode 100644
index 1ed1209..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_5/._gc_stats.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_5/._raincloud_malt_assignment_stats.pdf b/06-publication/supplemental_figures/Sup_fig_5/._raincloud_malt_assignment_stats.pdf
deleted file mode 100644
index 25bac03..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_5/._raincloud_malt_assignment_stats.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_5/._rl_stats.pdf b/06-publication/supplemental_figures/Sup_fig_5/._rl_stats.pdf
deleted file mode 100644
index aaccc55..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_5/._rl_stats.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_6/._.DS_Store b/06-publication/supplemental_figures/Sup_fig_6/._.DS_Store
deleted file mode 100644
index 22d6724..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_6/._.DS_Store and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.pdf b/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.pdf
deleted file mode 100644
index fdae2b9..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.png b/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.png
deleted file mode 100644
index 3485686..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.png and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.svg b/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.svg
deleted file mode 100644
index 70f5b3a..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_6/._Sup_fig_6.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_6/._gap_cluster_KOs.pdf b/06-publication/supplemental_figures/Sup_fig_6/._gap_cluster_KOs.pdf
deleted file mode 100644
index a832394..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_6/._gap_cluster_KOs.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_6/._gap_cluster_samples.pdf b/06-publication/supplemental_figures/Sup_fig_6/._gap_cluster_samples.pdf
deleted file mode 100644
index fbe9eca..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_6/._gap_cluster_samples.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_7/._KEGG_KO_heatmap.svg b/06-publication/supplemental_figures/Sup_fig_7/._KEGG_KO_heatmap.svg
deleted file mode 100644
index 4f7e46d..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_7/._KEGG_KO_heatmap.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_7/._Sup_fig_7.png b/06-publication/supplemental_figures/Sup_fig_7/._Sup_fig_7.png
deleted file mode 100644
index 84572ae..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_7/._Sup_fig_7.png and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_7/._Sup_fig_7.svg b/06-publication/supplemental_figures/Sup_fig_7/._Sup_fig_7.svg
deleted file mode 100644
index ca36a0f..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_7/._Sup_fig_7.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_8/._Sup_fig_8.svg b/06-publication/supplemental_figures/Sup_fig_8/._Sup_fig_8.svg
deleted file mode 100644
index a4ff58d..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_8/._Sup_fig_8.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_8/._sp_all_continent_no_ott_plot.pdf b/06-publication/supplemental_figures/Sup_fig_8/._sp_all_continent_no_ott_plot.pdf
deleted file mode 100644
index c2324cf..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_8/._sp_all_continent_no_ott_plot.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_8/._species_pca_kegg_clusters.pdf b/06-publication/supplemental_figures/Sup_fig_8/._species_pca_kegg_clusters.pdf
deleted file mode 100644
index 4b15a6f..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_8/._species_pca_kegg_clusters.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_9/._.DS_Store b/06-publication/supplemental_figures/Sup_fig_9/._.DS_Store
deleted file mode 100644
index 27baf82..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_9/._.DS_Store and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.pdf b/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.pdf
deleted file mode 100644
index f411a4e..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.png b/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.png
deleted file mode 100644
index 68caf92..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.png and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.svg b/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.svg
deleted file mode 100644
index a6d60d4..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_9/._Sup_fig_9.svg and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_9/._abot439_gubbins_masked_tree.pdf b/06-publication/supplemental_figures/Sup_fig_9/._abot439_gubbins_masked_tree.pdf
deleted file mode 100644
index baf8b6c..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_9/._abot439_gubbins_masked_tree.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_9/._abot439_raxml_tree.pdf b/06-publication/supplemental_figures/Sup_fig_9/._abot439_raxml_tree.pdf
deleted file mode 100644
index bdf3898..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_9/._abot439_raxml_tree.pdf and /dev/null differ
diff --git a/06-publication/supplemental_figures/Sup_fig_9/._raxml_gubbins_masked_vs_raxml_trees.svg b/06-publication/supplemental_figures/Sup_fig_9/._raxml_gubbins_masked_vs_raxml_trees.svg
deleted file mode 100644
index 75edd6c..0000000
Binary files a/06-publication/supplemental_figures/Sup_fig_9/._raxml_gubbins_masked_vs_raxml_trees.svg and /dev/null differ