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Prerequisites_BadlandsAug2019.txt
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sudo apt-get update -y
sudo apt-get install -y git python python-numpy python-scipy python-pip python-dev python-setuptools python-matplotlib libzmq3-dev pkg-config libfreetype6-dev libopenmpi-dev openmpi-bin libhdf5-dev liblapack-dev libedit-dev gfortran libnetcdf-dev python-mpltoolkits.basemap
##sudo apt-get install libpng3 llvm-3.6 # Currently causing crashes due to latest upgrade
sudo pip install -U setuptools
sudo pip install -U pip # fixes AssertionError in Ubuntu pip
sudo pip install enum34
sudo pip install jupyter markupsafe zmq singledispatch backports_abc certifi jsonschema ipyparallel path.py matplotlib mpi4py==1.3.1
sudo pip install git+https://github.com/drufat/triangle
sudo pip install Cython==0.20 h5py scipy numpy ez_setup numba
sudo pip install plotly==2.3.0
# sudo pip install gFlex (Had to install using github Link https://github.com/awickert/gFlex) (download and install via the folder setup.py)
sudo pip install netcdf4 colorlover scikit-fuzzy pyevtk cmocean
Step 2:
git clone https://github.com/badlands-model/badlands.git
cd BadLands/pyBadlands/libUtils
sudo make
# Go to parent directory of cloned repo such as home and run
sudo pip install -e paralleltemp_Bayeslands (foldername - or pt-Bayeslands)
Step 3:
cd to home directory /home/
nano .bashrc
#add path at the end replacing 'home/danial' with relevant path of your local repo
export LD_LIBRARY_PATH="/home/danial/BadLands/pyBadlands/libUtils:$LD_LIBR$" (should be your path)
export PYTHON_PATH="/home/danial/BadLands/pyBadlands/libUtils:$PYTHON_PATH" (should be your path)
-------------
attrs 19.3.0
backports-abc 0.5
backports.functools-lru-cache 1.6.1
backports.os 0.1.1
backports.shutil-get-terminal-size 1.0.0
basemap 1.1.0
bleach 3.1.1
certifi 2019.11.28
cftime 1.0.4.2
chardet 3.0.4
cmocean 2.0
colorlover 0.3.0
configobj 5.0.6
configparser 4.0.2
contextlib2 0.6.0.post1
cycler 0.10.0
Cython 0.20
dbfpy 2.3.1
decorator 4.4.1
defusedxml 0.6.0
entrypoints 0.3
enum34 1.1.9
ez-setup 0.9
funcsigs 1.0.2
functools32 3.2.3.post2
future 0.18.2
futures 3.3.0
GDAL 2.4.2
gFlex 1.1.0
h5py 2.10.0
idna 2.9
importlib-metadata 1.5.0
ipaddress 1.0.23
ipykernel 4.10.1
ipyparallel 6.2.4
ipython 5.9.0
ipython-genutils 0.2.0
ipywidgets 7.5.1
Jinja2 2.11.1
jsonschema 3.2.0
jupyter 1.0.0
jupyter-client 5.3.4
jupyter-console 5.2.0
jupyter-core 4.6.3
kiwisolver 1.1.0
llvmlite 0.31.0
MarkupSafe 1.1.1
matplotlib 2.1.1
mistune 0.8.4
mock 2.0.0
mpi4py 1.3.1
nbconvert 5.6.1
nbformat 4.4.0
netCDF4 1.5.3
networkx 2.2
notebook 5.7.8
numba 0.47.0
numpy 1.16.6
pandas 0.24.2
pandocfilters 1.4.2
path.py 11.5.2
pathlib2 2.3.5
pbr 3.1.1
pexpect 4.8.0
pickleshare 0.7.5
Pillow 6.2.2
pip 20.0.2
plotly 2.3.0
prometheus-client 0.7.1
prompt-toolkit 1.0.18
ptyprocess 0.6.0
pyBadlands 0.1 /home/rohit/Dropbox/GitHub/intelligentEarth/Bayeslands-basin-continental
pycairo 1.16.2
pycrypto 2.6.1
pyevtk 1.1.0
Pygments 2.5.2
pygobject 3.26.1
pyparsing 2.4.6
pyproj 1.9.5.1
pyrsistent 0.15.7
pyshp 1.2.12
python-apt 1.6.5+ubuntu0.2
python-dateutil 2.8.1
python-xlib 0.20
pytz 2019.3
pyxdg 0.25
pyzmq 19.0.0
qtconsole 4.6.0
requests 2.23.0
scandir 1.10.0
scikit-fuzzy 0.4.2
scipy 0.19.1
Send2Trash 1.5.0
setproctitle 1.1.10
setuptools 44.0.0
simplegeneric 0.8.1
singledispatch 3.4.0.3
six 1.11.0
subprocess32 3.2.7
terminado 0.8.3
testpath 0.4.4
tornado 5.1.1
traitlets 4.3.3
triangle 20190115.3
urllib3 1.25.8
wcwidth 0.1.8
webencodings 0.5.1
widgetsnbextension 3.5.1