installation.txt

Installation Instructions:

To run this you must have python installed on your system. This particular repository is written in Python 2.7

Step 0: Required packages

* sudo apt-get install python python-numpy python-scipy python-setuptools python-matplotlib
* sudo apt-get update -y
* sudo apt-get install -y git python-pip python-dev libzmq3-dev pkg-config libfreetype6-dev libpng3 libopenmpi-dev openmpi-bin libhdf5-dev liblapack-dev llvm-3.6 libedit-dev gfortran
* sudo pip install -U setuptools
* sudo pip install -U pip # fixes AssertionError in Ubuntu pip
* sudo pip install enum34 jupyter markupsafe zmq singledispatch backports_abc certifi jsonschema ipyparallel path.py matplotlib mpi4py==1.3.1 git+https://github.com/badlands-model/triangle pandas plotly
* sudo apt-get install -y libnetcdf-dev python-mpltoolkits.basemap
* sudo pip install Cython==0.20 h5py scipy numpy numba==0.23.1 netcdf4 colorlover cmocean scikit-fuzzy pyevtk
* sudo pip install ez_setup
* git clone https://github.com/awickert/gFlex
  cd gFlex
  sudo python setup.py install

**

Step 1: Clone BayesLands Repository
	git clone https://github.com/badlands-model/BayesLands.git

Step 2: Install BayesLands
	sudo pip install -e BayesLands

Step 3: Run Make File
	cd BayesLands/pyBadlands/libUtils
	sudo make

Step 4: Set export Path in .bashrc file
	cd -
	nano .bashrc
	add following two paths at the end of the file (replace 'your-local-path' with where the repo is installed):
		1) export LD_LIBRARY_PATH="your-local-path/BayesLands/pyBadlands/libUtils:$LD_LIBR$"
		2) export PYTHON_PATH="your-local-path/BayesLands/pyBadlands/libUtils:$PYTHON_PATH"