From 7f048e713ccf23e4dc949de16fe0f8c44546b7b0 Mon Sep 17 00:00:00 2001 From: Matt Burridge Date: Mon, 23 Sep 2024 14:44:45 +0100 Subject: [PATCH] updated to v0.3.0 --- .github/workflows/cli.yml | 38 -- Cargo.toml | 2 +- cli/Cargo.toml | 2 +- python/Cargo.lock | 1054 +------------------------------------ python/Cargo.toml | 2 +- python/pycrate.pyi | 124 ++++- python/pyproject.toml | 8 +- 7 files changed, 151 insertions(+), 1079 deletions(-) delete mode 100644 .github/workflows/cli.yml diff --git a/.github/workflows/cli.yml b/.github/workflows/cli.yml deleted file mode 100644 index e067bad..0000000 --- a/.github/workflows/cli.yml +++ /dev/null @@ -1,38 +0,0 @@ -name: Create Release - -on: - push: - branches: - - main - -jobs: - create-release: - runs-on: ubuntu-latest - # Use a container with GLIBC 2.17 - container: quay.io/pypa/manylinux2014_x86_64 - steps: - - name: Show GLIBC - run: ldd --version - - name: Checkout sources - uses: actions/checkout@v4 - - - name: Install stable toolchain - uses: actions-rs/toolchain@v1 - with: - profile: minimal - toolchain: stable - override: true - - - uses: Swatinem/rust-cache@v1 - - - name: Build - uses: actions-rs/cargo@v1 - with: - command: build - args: --release --manifest-path cli/Cargo.toml - - - name: Upload binary - uses: actions/upload-artifact@v4 - with: - name: cli-tool - path: cli diff --git a/Cargo.toml b/Cargo.toml index 0b2e1a6..a65c51f 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "ro-crate-rs" -version = "0.1.0" +version = "0.3.0" edition = "2021" repository = "https://github.com/intbio-ncl/ro-crate-rs" authors = ["Matt Burridge "] diff --git a/cli/Cargo.toml b/cli/Cargo.toml index f20862b..452dae7 100644 --- a/cli/Cargo.toml +++ b/cli/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "rocraters" -version = "0.1.0" +version = "0.3.0" edition = "2021" # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html diff --git a/python/Cargo.lock b/python/Cargo.lock index 90c842d..df1ad30 100644 --- a/python/Cargo.lock +++ b/python/Cargo.lock @@ -28,15 +28,6 @@ dependencies = [ "cpufeatures", ] -[[package]] -name = "aho-corasick" -version = "1.1.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916" -dependencies = [ - "memchr", -] - [[package]] name = "android-tzdata" version = "0.1.1" @@ -52,83 +43,6 @@ dependencies = [ "libc", ] -[[package]] -name = "anstream" -version = "0.6.14" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "418c75fa768af9c03be99d17643f93f79bbba589895012a80e3452a19ddda15b" -dependencies = [ - "anstyle", - "anstyle-parse", - "anstyle-query", - "anstyle-wincon", - "colorchoice", - "is_terminal_polyfill", - "utf8parse", -] - -[[package]] -name = "anstyle" -version = "1.0.7" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "038dfcf04a5feb68e9c60b21c9625a54c2c0616e79b72b0fd87075a056ae1d1b" - -[[package]] -name = "anstyle-parse" -version = "0.2.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c03a11a9034d92058ceb6ee011ce58af4a9bf61491aa7e1e59ecd24bd40d22d4" -dependencies = [ - "utf8parse", -] - -[[package]] -name = "anstyle-query" -version = "1.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad186efb764318d35165f1758e7dcef3b10628e26d41a44bc5550652e6804391" -dependencies = [ - "windows-sys 0.52.0", -] - -[[package]] -name = "anstyle-wincon" -version = "3.0.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "61a38449feb7068f52bb06c12759005cf459ee52bb4adc1d5a7c4322d716fb19" -dependencies = [ - "anstyle", - "windows-sys 0.52.0", -] - -[[package]] -name = "async-recursion" -version = "1.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3b43422f69d8ff38f95f1b2bb76517c91589a924d1559a0e935d7c8ce0274c11" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.58", -] - -[[package]] -name = "async-trait" -version = "0.1.80" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c6fa2087f2753a7da8cc1c0dbfcf89579dd57458e36769de5ac750b4671737ca" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.58", -] - -[[package]] -name = "atomic-waker" -version = "1.1.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1505bd5d3d116872e7271a6d4e16d81d0c8570876c8de68093a09ac269d8aac0" - [[package]] name = "autocfg" version = "1.2.0" @@ -156,12 +70,6 @@ version = "0.21.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9d297deb1925b89f2ccc13d7635fa0714f12c87adce1c75356b39ca9b7178567" -[[package]] -name = "base64" -version = "0.22.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72b3254f16251a8381aa12e40e3c4d2f0199f8c6508fbecb9d91f575e0fbb8c6" - [[package]] name = "base64ct" version = "1.6.0" @@ -174,12 +82,6 @@ version = "1.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" -[[package]] -name = "bitflags" -version = "2.6.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b048fb63fd8b5923fc5aa7b340d8e156aec7ec02f0c78fa8a6ddc2613f6f71de" - [[package]] name = "block-buffer" version = "0.10.4" @@ -269,12 +171,6 @@ dependencies = [ "inout", ] -[[package]] -name = "colorchoice" -version = "1.0.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0b6a852b24ab71dffc585bcb46eaf7959d175cb865a7152e35b348d1b2960422" - [[package]] name = "constant_time_eq" version = "0.1.5" @@ -306,21 +202,6 @@ dependencies = [ "libc", ] -[[package]] -name = "crc" -version = "3.2.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "69e6e4d7b33a94f0991c26729976b10ebde1d34c3ee82408fb536164fa10d636" -dependencies = [ - "crc-catalog", -] - -[[package]] -name = "crc-catalog" -version = "2.4.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "19d374276b40fb8bbdee95aef7c7fa6b5316ec764510eb64b8dd0e2ed0d7e7f5" - [[package]] name = "crc32fast" version = "1.4.0" @@ -346,19 +227,6 @@ dependencies = [ "typenum", ] -[[package]] -name = "dashmap" -version = "5.5.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "978747c1d849a7d2ee5e8adc0159961c48fb7e5db2f06af6723b80123bb53856" -dependencies = [ - "cfg-if", - "hashbrown", - "lock_api", - "once_cell", - "parking_lot_core", -] - [[package]] name = "deranged" version = "0.3.11" @@ -368,17 +236,6 @@ dependencies = [ "powerfmt", ] -[[package]] -name = "derivative" -version = "2.2.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fcc3dd5e9e9c0b295d6e1e4d811fb6f157d5ffd784b8d202fc62eac8035a770b" -dependencies = [ - "proc-macro2", - "quote", - "syn 1.0.109", -] - [[package]] name = "digest" version = "0.10.7" @@ -399,51 +256,12 @@ dependencies = [ "cfg-if", ] -[[package]] -name = "env_filter" -version = "0.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a009aa4810eb158359dda09d0c87378e4bbb89b5a801f016885a4707ba24f7ea" -dependencies = [ - "log", - "regex", -] - -[[package]] -name = "env_logger" -version = "0.11.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38b35839ba51819680ba087cd351788c9a3c476841207e0b8cee0b04722343b9" -dependencies = [ - "anstream", - "anstyle", - "env_filter", - "humantime", - "log", -] - [[package]] name = "equivalent" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5443807d6dff69373d433ab9ef5378ad8df50ca6298caf15de6e52e24aaf54d5" -[[package]] -name = "errno" -version = "0.3.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "534c5cf6194dfab3db3242765c03bbe257cf92f22b38f6bc0c58d59108a820ba" -dependencies = [ - "libc", - "windows-sys 0.52.0", -] - -[[package]] -name = "fastrand" -version = "2.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9fc0510504f03c51ada170672ac806f1f105a88aa97a5281117e1ddc3368e51a" - [[package]] name = "flate2" version = "1.0.28" @@ -460,21 +278,6 @@ version = "1.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1" -[[package]] -name = "foreign-types" -version = "0.3.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f6f339eb8adc052cd2ca78910fda869aefa38d22d5cb648e6485e4d3fc06f3b1" -dependencies = [ - "foreign-types-shared", -] - -[[package]] -name = "foreign-types-shared" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "00b0228411908ca8685dba7fc2cdd70ec9990a6e753e89b6ac91a84c40fbaf4b" - [[package]] name = "form_urlencoded" version = "1.2.1" @@ -491,7 +294,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "eac8f7d7865dcb88bd4373ab671c8cf4508703796caa2b1985a9ca867b3fcb78" dependencies = [ "futures-core", - "futures-sink", ] [[package]] @@ -506,17 +308,6 @@ version = "0.3.30" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a44623e20b9681a318efdd71c299b6b222ed6f231972bfe2f224ebad6311f0c1" -[[package]] -name = "futures-macro" -version = "0.3.30" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "87750cf4b7a4c0625b1529e4c543c2182106e4dedc60a2a6455e00d212c489ac" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.58", -] - [[package]] name = "futures-sink" version = "0.3.30" @@ -537,8 +328,6 @@ checksum = "3d6401deb83407ab3da39eba7e33987a73c3df0c82b4bb5813ee871c19c41d48" dependencies = [ "futures-core", "futures-io", - "futures-macro", - "futures-sink", "futures-task", "memchr", "pin-project-lite", @@ -584,26 +373,7 @@ dependencies = [ "futures-core", "futures-sink", "futures-util", - "http 0.2.12", - "indexmap", - "slab", - "tokio", - "tokio-util", - "tracing", -] - -[[package]] -name = "h2" -version = "0.4.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fa82e28a107a8cc405f0839610bdc9b15f1e25ec7d696aa5cf173edbcb1486ab" -dependencies = [ - "atomic-waker", - "bytes", - "fnv", - "futures-core", - "futures-sink", - "http 1.1.0", + "http", "indexmap", "slab", "tokio", @@ -623,18 +393,6 @@ version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" -[[package]] -name = "hermit-abi" -version = "0.3.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d231dfb89cfffdbc30e7fc41579ed6066ad03abda9e567ccafae602b97ec5024" - -[[package]] -name = "hex" -version = "0.4.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7f24254aa9a54b5c858eaee2f5bccdb46aaf0e486a595ed5fd8f86ba55232a70" - [[package]] name = "hmac" version = "0.12.1" @@ -644,15 +402,6 @@ dependencies = [ "digest", ] -[[package]] -name = "home" -version = "0.5.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e3d1354bf6b7235cb4a0576c2619fd4ed18183f689b12b006a0ee7329eeff9a5" -dependencies = [ - "windows-sys 0.52.0", -] - [[package]] name = "http" version = "0.2.12" @@ -664,17 +413,6 @@ dependencies = [ "itoa", ] -[[package]] -name = "http" -version = "1.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "21b9ddb458710bc376481b842f5da65cdf31522de232c1ca8146abce2a358258" -dependencies = [ - "bytes", - "fnv", - "itoa", -] - [[package]] name = "http-body" version = "0.4.6" @@ -682,30 +420,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7ceab25649e9960c0311ea418d17bee82c0dcec1bd053b5f9a66e265a693bed2" dependencies = [ "bytes", - "http 0.2.12", - "pin-project-lite", -] - -[[package]] -name = "http-body" -version = "1.0.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cac85db508abc24a2e48553ba12a996e87244a0395ce011e62b37158745d643" -dependencies = [ - "bytes", - "http 1.1.0", -] - -[[package]] -name = "http-body-util" -version = "0.1.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "793429d76616a256bcb62c2a2ec2bed781c8307e797e2598c50010f2bee2544f" -dependencies = [ - "bytes", - "futures-util", - "http 1.1.0", - "http-body 1.0.0", + "http", "pin-project-lite", ] @@ -721,12 +436,6 @@ version = "1.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "df3b46402a9d5adb4c86a0cf463f42e19994e3ee891101b1841f30a545cb49a9" -[[package]] -name = "humantime" -version = "2.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4" - [[package]] name = "hyper" version = "0.14.28" @@ -737,9 +446,9 @@ dependencies = [ "futures-channel", "futures-core", "futures-util", - "h2 0.3.26", - "http 0.2.12", - "http-body 0.4.6", + "h2", + "http", + "http-body", "httparse", "httpdate", "itoa", @@ -751,81 +460,6 @@ dependencies = [ "want", ] -[[package]] -name = "hyper" -version = "1.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fe575dd17d0862a9a33781c8c4696a55c320909004a67a00fb286ba8b1bc496d" -dependencies = [ - "bytes", - "futures-channel", - "futures-util", - "h2 0.4.5", - "http 1.1.0", - "http-body 1.0.0", - "httparse", - "httpdate", - "itoa", - "pin-project-lite", - "smallvec", - "tokio", - "want", -] - -[[package]] -name = "hyper-rustls" -version = "0.27.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5ee4be2c948921a1a5320b629c4193916ed787a7f7f293fd3f7f5a6c9de74155" -dependencies = [ - "futures-util", - "http 1.1.0", - "hyper 1.3.1", - "hyper-util", - "rustls", - "rustls-pki-types", - "tokio", - "tokio-rustls", - "tower-service", - "webpki-roots", -] - -[[package]] -name = "hyper-tls" -version = "0.6.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "70206fc6890eaca9fde8a0bf71caa2ddfc9fe045ac9e5c70df101a7dbde866e0" -dependencies = [ - "bytes", - "http-body-util", - "hyper 1.3.1", - "hyper-util", - "native-tls", - "tokio", - "tokio-native-tls", - "tower-service", -] - -[[package]] -name = "hyper-util" -version = "0.1.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7b875924a60b96e5d7b9ae7b066540b1dd1cbd90d1828f54c92e02a283351c56" -dependencies = [ - "bytes", - "futures-channel", - "futures-util", - "http 1.1.0", - "http-body 1.0.0", - "hyper 1.3.1", - "pin-project-lite", - "socket2", - "tokio", - "tower", - "tower-service", - "tracing", -] - [[package]] name = "iana-time-zone" version = "0.1.60" @@ -890,12 +524,6 @@ version = "2.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8f518f335dce6725a761382244631d86cf0ccb2863413590b31338feb467f9c3" -[[package]] -name = "is_terminal_polyfill" -version = "1.70.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f8478577c03552c21db0e2724ffb8986a5ce7af88107e6be5d2ee6e158c12800" - [[package]] name = "itoa" version = "1.0.11" @@ -920,24 +548,12 @@ dependencies = [ "wasm-bindgen", ] -[[package]] -name = "lazy_static" -version = "1.5.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe" - [[package]] name = "libc" version = "0.2.153" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9c198f91728a82281a64e1f4f9eeb25d82cb32a5de251c6bd1b5154d63a8e7bd" -[[package]] -name = "linux-raw-sys" -version = "0.4.14" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "78b3ae25bc7c8c38cec158d1f2757ee79e9b3740fbc7ccf0e59e4b08d793fa89" - [[package]] name = "lock_api" version = "0.4.11" @@ -954,12 +570,6 @@ version = "0.4.21" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "90ed8c1e510134f979dbc4f070f87d4313098b704861a105fe34231c70a3901c" -[[package]] -name = "md5" -version = "0.7.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "490cc448043f947bae3cbee9c203358d62dbee0db12107a74be5c30ccfd09771" - [[package]] name = "memchr" version = "2.7.2" @@ -981,46 +591,6 @@ version = "0.3.17" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6877bb514081ee2a7ff5ef9de3281f14a4dd4bceac4c09388074a6b5df8a139a" -[[package]] -name = "minio" -version = "0.2.0-alpha" -source = "git+https://github.com/minio/minio-rs.git#b19513c90fa44724c4bd0ce328a0509c91652fae" -dependencies = [ - "async-recursion", - "async-trait", - "base64 0.22.1", - "byteorder", - "bytes", - "chrono", - "crc", - "dashmap", - "derivative", - "env_logger", - "futures-util", - "hex", - "hmac", - "home", - "http 1.1.0", - "hyper 1.3.1", - "lazy_static", - "log", - "md5", - "multimap", - "os_info", - "percent-encoding", - "rand", - "regex", - "reqwest 0.12.5", - "serde", - "serde_json", - "sha2", - "tokio", - "tokio-stream", - "tokio-util", - "urlencoding", - "xmltree", -] - [[package]] name = "miniz_oxide" version = "0.7.2" @@ -1041,32 +611,6 @@ dependencies = [ "windows-sys 0.48.0", ] -[[package]] -name = "multimap" -version = "0.10.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "defc4c55412d89136f966bbb339008b474350e5e6e78d2714439c386b3137a03" -dependencies = [ - "serde", -] - -[[package]] -name = "native-tls" -version = "0.2.12" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8614eb2c83d59d1c8cc974dd3f920198647674a0a035e1af1fa58707e317466" -dependencies = [ - "libc", - "log", - "openssl", - "openssl-probe", - "openssl-sys", - "schannel", - "security-framework", - "security-framework-sys", - "tempfile", -] - [[package]] name = "num-conv" version = "0.1.0" @@ -1082,16 +626,6 @@ dependencies = [ "autocfg", ] -[[package]] -name = "num_cpus" -version = "1.16.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4161fcb6d602d4d2081af7c3a45852d875a03dd337a6bfdd6e06407b61342a43" -dependencies = [ - "hermit-abi", - "libc", -] - [[package]] name = "object" version = "0.32.2" @@ -1107,61 +641,6 @@ version = "1.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3fdb12b2476b595f9358c5161aa467c2438859caa136dec86c26fdd2efe17b92" -[[package]] -name = "openssl" -version = "0.10.64" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "95a0481286a310808298130d22dd1fef0fa571e05a8f44ec801801e84b216b1f" -dependencies = [ - "bitflags 2.6.0", - "cfg-if", - "foreign-types", - "libc", - "once_cell", - "openssl-macros", - "openssl-sys", -] - -[[package]] -name = "openssl-macros" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a948666b637a0f465e8564c73e89d4dde00d72d4d473cc972f390fc3dcee7d9c" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.58", -] - -[[package]] -name = "openssl-probe" -version = "0.1.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf" - -[[package]] -name = "openssl-sys" -version = "0.9.102" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c597637d56fbc83893a35eb0dd04b2b8e7a50c91e64e9493e398b5df4fb45fa2" -dependencies = [ - "cc", - "libc", - "pkg-config", - "vcpkg", -] - -[[package]] -name = "os_info" -version = "3.8.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ae99c7fa6dd38c7cafe1ec085e804f8f555a2f8659b0dbe03f1f9963a9b51092" -dependencies = [ - "log", - "serde", - "windows-sys 0.52.0", -] - [[package]] name = "parking_lot" version = "0.12.1" @@ -1214,26 +693,6 @@ version = "2.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e3148f5046208a5d56bcfc03053e3ca6334e51da8dfb19b6cdc8b306fae3283e" -[[package]] -name = "pin-project" -version = "1.1.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b6bf43b791c5b9e34c3d182969b4abb522f9343702850a2e57f460d00d09b4b3" -dependencies = [ - "pin-project-internal", -] - 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"native-tls", "once_cell", "percent-encoding", "pin-project-lite", - "quinn", - "rustls", - "rustls-pemfile", - "rustls-pki-types", "serde", "serde_json", "serde_urlencoded", - "sync_wrapper 1.0.1", + "sync_wrapper", "system-configuration", "tokio", - "tokio-native-tls", - "tokio-rustls", - "tokio-util", "tower-service", "url", "wasm-bindgen", "wasm-bindgen-futures", - "wasm-streams", "web-sys", - "webpki-roots", - "winreg 0.52.0", -] - -[[package]] -name = "ring" -version = "0.17.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c17fa4cb658e3583423e915b9f3acc01cceaee1860e33d59ebae66adc3a2dc0d" -dependencies = [ - "cc", - "cfg-if", - "getrandom", - "libc", - "spin", - "untrusted", - "windows-sys 0.52.0", + "winreg", ] [[package]] @@ -1573,12 +890,10 @@ name = "ro-crate-rs" version = "0.1.0" dependencies = [ "chrono", - "minio", "rand", - "reqwest 0.11.27", + "reqwest", "serde", "serde_json", - "tokio", "url", "uuid", "walkdir", @@ -1601,66 +916,6 @@ version = "0.1.23" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d626bb9dae77e28219937af045c257c28bfd3f69333c512553507f5f9798cb76" -[[package]] -name = "rustc-hash" -version = "1.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2" - -[[package]] -name = "rustix" -version = "0.38.34" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "70dc5ec042f7a43c4a73241207cecc9873a06d45debb38b329f8541d85c2730f" -dependencies = [ - "bitflags 2.6.0", - "errno", - "libc", - "linux-raw-sys", - "windows-sys 0.52.0", -] - -[[package]] -name = "rustls" -version = "0.23.10" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "05cff451f60db80f490f3c182b77c35260baace73209e9cdbbe526bfe3a4d402" -dependencies = [ - "once_cell", - "ring", - "rustls-pki-types", - "rustls-webpki", - "subtle", - "zeroize", -] - -[[package]] -name = "rustls-pemfile" -version = "2.1.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "29993a25686778eb88d4189742cd713c9bce943bc54251a33509dc63cbacf73d" -dependencies = [ - "base64 0.22.1", - "rustls-pki-types", -] - -[[package]] -name = "rustls-pki-types" -version = "1.7.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "976295e77ce332211c0d24d92c0e83e50f5c5f046d11082cea19f3df13a3562d" - -[[package]] -name = "rustls-webpki" -version = "0.102.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ff448f7e92e913c4b7d4c6d8e4540a1724b319b4152b8aef6d4cf8339712b33e" -dependencies = [ - "ring", - "rustls-pki-types", - "untrusted", -] - [[package]] name = "ryu" version = "1.0.17" @@ -1676,44 +931,12 @@ dependencies = [ "winapi-util", ] -[[package]] -name = "schannel" -version = "0.1.23" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fbc91545643bcf3a0bbb6569265615222618bdf33ce4ffbbd13c4bbd4c093534" -dependencies = [ - "windows-sys 0.52.0", -] - [[package]] name = "scopeguard" version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49" -[[package]] -name = "security-framework" -version = "2.11.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c627723fd09706bacdb5cf41499e95098555af3c3c29d014dc3c458ef6be11c0" -dependencies = [ - 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[[package]] name = "subtle" version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "81cdd64d312baedb58e21336b31bc043b77e01cc99033ce76ef539f78e965ebc" -[[package]] -name = "syn" -version = "1.0.109" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237" -dependencies = [ - "proc-macro2", - "quote", - "unicode-ident", -] - [[package]] name = "syn" version = "2.0.58" @@ -1853,19 +1050,13 @@ version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2047c6ded9c721764247e62cd3b03c09ffc529b2ba5b10ec482ae507a4a70160" -[[package]] -name = "sync_wrapper" -version = "1.0.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a7065abeca94b6a8a577f9bd45aa0867a2238b74e8eb67cf10d492bc39351394" - [[package]] name = "system-configuration" version = "0.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ba3a3adc5c275d719af8cb4272ea1c4a6d668a777f37e115f6d11ddbc1c8e0e7" dependencies = [ - "bitflags 1.3.2", + "bitflags", "core-foundation", "system-configuration-sys", ] @@ -1886,38 +1077,6 @@ version = "0.12.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e1fc403891a21bcfb7c37834ba66a547a8f402146eba7265b5a6d88059c9ff2f" -[[package]] -name = "tempfile" -version = "3.10.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "85b77fafb263dd9d05cbeac119526425676db3784113aa9295c88498cbf8bff1" -dependencies = [ - "cfg-if", - "fastrand", - "rustix", - "windows-sys 0.52.0", -] - -[[package]] -name = "thiserror" -version = "1.0.61" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c546c80d6be4bc6a00c0f01730c08df82eaa7a7a61f11d656526506112cc1709" -dependencies = [ - "thiserror-impl", -] - -[[package]] -name = "thiserror-impl" -version = "1.0.61" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "46c3384250002a6d5af4d114f2845d37b57521033f30d5c3f46c4d70e1197533" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.58", -] - [[package]] name = "time" version = "0.3.36" @@ -1962,58 +1121,11 @@ dependencies = [ "bytes", "libc", "mio", - "num_cpus", - "parking_lot", "pin-project-lite", - "signal-hook-registry", "socket2", - "tokio-macros", "windows-sys 0.48.0", ] -[[package]] -name = "tokio-macros" -version = "2.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5f5ae998a069d4b5aba8ee9dad856af7d520c3699e6159b185c2acd48155d39a" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.58", -] - -[[package]] -name = "tokio-native-tls" -version = "0.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bbae76ab933c85776efabc971569dd6119c580d8f5d448769dec1764bf796ef2" -dependencies = [ - "native-tls", - "tokio", -] - -[[package]] -name = "tokio-rustls" -version = "0.26.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c7bc40d0e5a97695bb96e27995cd3a08538541b0a846f65bba7a359f36700d4" -dependencies = [ - "rustls", - "rustls-pki-types", - "tokio", -] - -[[package]] -name = "tokio-stream" -version = "0.1.15" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "267ac89e0bec6e691e5813911606935d77c476ff49024f98abcea3e7b15e37af" -dependencies = [ - "futures-core", - "pin-project-lite", - "tokio", -] - [[package]] name = "tokio-util" version = "0.7.10" @@ -2028,27 +1140,6 @@ dependencies = [ "tracing", ] -[[package]] -name = "tower" -version = "0.4.13" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b8fa9be0de6cf49e536ce1851f987bd21a43b771b09473c3549a6c853db37c1c" -dependencies = [ - "futures-core", - "futures-util", - "pin-project", - "pin-project-lite", - "tokio", - "tower-layer", - "tower-service", -] - -[[package]] -name = "tower-layer" -version = "0.3.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c20c8dbed6283a09604c3e69b4b7eeb54e298b8a600d4d5ecb5ad39de609f1d0" - [[package]] name = "tower-service" version = "0.3.2" @@ -2062,21 +1153,9 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c3523ab5a71916ccf420eebdf5521fcef02141234bbc0b8a49f2fdc4544364ef" dependencies = [ "pin-project-lite", - "tracing-attributes", "tracing-core", ] -[[package]] -name = "tracing-attributes" -version = "0.1.27" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "34704c8d6ebcbc939824180af020566b01a7c01f80641264eba0999f6c2b6be7" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.58", -] - [[package]] name = "tracing-core" version = "0.1.32" @@ -2125,12 +1204,6 @@ version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c7de7d73e1754487cb58364ee906a499937a0dfabd86bcb980fa99ec8c8fa2ce" -[[package]] -name = "untrusted" -version = "0.9.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ecb6da28b8a351d773b68d5825ac39017e680750f980f3a1a85cd8dd28a47c1" - [[package]] name = "url" version = "2.5.0" @@ -2142,18 +1215,6 @@ dependencies = [ "percent-encoding", ] -[[package]] -name = "urlencoding" -version = "2.1.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "daf8dba3b7eb870caf1ddeed7bc9d2a049f3cfdfae7cb521b087cc33ae4c49da" - -[[package]] -name = "utf8parse" -version = "0.2.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821" - [[package]] name = "uuid" version = "1.8.0" @@ -2163,12 +1224,6 @@ dependencies = [ "getrandom", ] -[[package]] -name = "vcpkg" -version = "0.2.15" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426" - [[package]] name = "version_check" version = "0.9.4" @@ -2221,7 +1276,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.58", + "syn", "wasm-bindgen-shared", ] @@ -2255,7 +1310,7 @@ checksum = "e94f17b526d0a461a191c78ea52bbce64071ed5c04c9ffe424dcb38f74171bb7" dependencies = [ "proc-macro2", "quote", - "syn 2.0.58", + "syn", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -2266,19 +1321,6 @@ version = "0.2.92" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "af190c94f2773fdb3729c55b007a722abb5384da03bc0986df4c289bf5567e96" -[[package]] -name = "wasm-streams" -version = "0.4.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b65dc4c90b63b118468cf747d8bf3566c1913ef60be765b5730ead9e0a3ba129" -dependencies = [ - "futures-util", - "js-sys", - "wasm-bindgen", - "wasm-bindgen-futures", - "web-sys", -] - [[package]] name = "web-sys" version = "0.3.69" @@ -2289,15 +1331,6 @@ dependencies = [ "wasm-bindgen", ] -[[package]] -name = "webpki-roots" -version = "0.26.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bd7c23921eeb1713a4e851530e9b9756e4fb0e89978582942612524cf09f01cd" -dependencies = [ - "rustls-pki-types", -] - [[package]] name = "winapi" version = "0.3.9" @@ -2480,37 +1513,6 @@ dependencies = [ "windows-sys 0.48.0", ] -[[package]] -name = "winreg" -version = "0.52.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a277a57398d4bfa075df44f501a17cfdf8542d224f0d36095a2adc7aee4ef0a5" -dependencies = [ - "cfg-if", - "windows-sys 0.48.0", -] - -[[package]] -name = "xml-rs" -version = "0.8.20" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "791978798f0597cfc70478424c2b4fdc2b7a8024aaff78497ef00f24ef674193" - -[[package]] -name = "xmltree" -version = "0.10.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d7d8a75eaf6557bb84a65ace8609883db44a29951042ada9b393151532e41fcb" -dependencies = [ - "xml-rs", -] - -[[package]] -name = "zeroize" -version = "1.8.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ced3678a2879b30306d323f4542626697a464a97c0a07c9aebf7ebca65cd4dde" - [[package]] name = "zip" version = "0.6.6" diff --git a/python/Cargo.toml b/python/Cargo.toml index 17f6656..84b8878 100644 --- a/python/Cargo.toml +++ b/python/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "rocraters-python" -version = "0.1.0" +version = "0.3.0" edition = "2021" authors = ["Matt Burridge "] description = "Lightweight Python library for RO-Crate manipulation implemented in Rust" diff --git a/python/pycrate.pyi b/python/pycrate.pyi index ea2cac9..e07cc16 100644 --- a/python/pycrate.pyi +++ b/python/pycrate.pyi @@ -1,8 +1,7 @@ class PyRoCrateContext: - """ A class representing the context of the RoCrate. It is initialised as empty""" + """A class representing the context of the RoCrate. It is initialised as empty""" def __init__(self) -> None: ... - - def from_string(self, context: str) -> 'PyRoCrateContext': + def from_string(self, context: str) -> "PyRoCrateContext": """ Creates a RoCrate context using a single string. This is useful for default RoCrate context creation @@ -10,12 +9,123 @@ class PyRoCrateContext: :param context: String of context to be created e.g.\ https://w3id.org/ro/crate/1.1/context """ - - def from_list(self, context: list) -> 'PyRoCrateContext': + + def from_list(self, context: list) -> "PyRoCrateContext": """ - Crates a complex RoCrate context using a list of contexts. This can be + Crates a complex RoCrate context using a list of contexts. This can be used for creating both extended and embedded contexts. - + :param context: List of contexts to be crated """ +class PyRoCrate: + """ + A class representing the RoCrate Graph. It is initialised as empty with + a known context + """ + def __init__(self, context: PyRoCrateContext) -> None: ... + def new_default(self) -> "PyRoCrate": + """ + Creates a default RoCrate object with MUST/SHOULD defaults. + """ + + def get_entity(self, id: str) -> dict: + """ + Gets a crate entity based upon ID and returns as a dict + + :param id: ID to search + """ + + def update_data(self, py_obj: dict) -> None: + """ + Update a data entity with new data + + Lazy update of data entity, finds id and overwrites the index. + Strongly recommended to extract index data, modify, then rewrite the + modified index data as the update. + + :param py_obj: dictionary to overwrite/add + """ + def update_contextual(self, py_obj: dict) -> None: + """ + Update a contextual entity with new data + + Lazy update of contextual entity, finds id and overwrites the index. + Strongly recommended to extract index data, modify, then rewrite the + modified index data as the update. + + :param py_obj: dictionary to overwrite/add + """ + def update_root(self, py_obj: dict) -> None: + """ + Update a root entity with new data + + Lazy update of root entity, finds id and overwrites the index. + Strongly recommended to extract index data, modify, then rewrite the + modified index data as the update. + + :param py_obj: dictionary to overwrite/add + """ + def update_descriptor(self, py_obj: dict) -> None: + """ + Update the metadata decriptor with new data + + Lazy update of the metadata descriptor, finds id and overwrites the index. + Strongly recommended to extract index data, modify, then rewrite the + modified index data as the update. + + :param py_obj: dictionary to overwrite/add + """ + + def replace_id(self, id_old: str, id_new: str) -> None: + """ + Overwrites an ID with a new ID + + Overwrites an ID with a new ID, and recursively changes every instance + of the old ID within the RO-Crate + + :param id_old: Old ID to search + :param new_id: New ID to replace old + """ + + def delete_entity(self, id: str, recursive: bool) -> None: + """ + Deletes target id entity. Can select recursive deletion + + :param id: ID of entity to delete + :param recursive: Boolean True if you want to delete all mentions of entity + """ + + def write(self, file_path: str) -> None: + """ + Writes the RO-Crate back to a ro-crate-metdata.json file + + :param file_path: File path to RO-Crate, if None default is current dir + """ + +def read(relative_path: str, validity: bool) -> "PyRoCrate": + """ + Reads in a Ro-Crate to memory allowing manipulation + + :param relative_path: Path to RO-Crate + :param validity: True if crate validation needed + """ + +def read_ob(obj: str, validity: bool) -> "PyRoCrate": + """ + Reads in a json object of a crate into memory allowing manipulation + + Useful for browsers/ applications + + :param obj: String of full RO-Crate + :param validity: True if crate validation needed + """ + +def zip(crate_path: str, external: bool) -> None: + """ + Targets an RO-Crate and zip directory contents. If external is True, pulls + all externally referenced (none relative) data entities into zip + + :param crate_path: Path to target crate + :param external: Boolean, if True pulls in external data to zip + """ diff --git a/python/pyproject.toml b/python/pyproject.toml index c362cfb..22d589e 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -7,18 +7,16 @@ name = "rocraters" description = "Lightweight Python library for RO-Crate manipulation implemented in Rust" readme = "README_py.md" keywords = ["ro-crate", "rocrate", "research object", "rocraters"] -requires-python = ">=3.7" +requires-python = ">=3.10" classifiers = [ "Programming Language :: Rust", "Programming Language :: Python :: Implementation :: CPython", "Programming Language :: Python :: Implementation :: PyPy", "Development Status :: 2 - Pre-Alpha", - "Programming Language :: Python :: 3.7", - "Programming Language :: Python :: 3.8", - "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", - "Programming Language :: Python :: 3.12" + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13" ] dynamic = ["version"]