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2024-12-06 03:30:14 INFO tasks.py:409 All input files found: running task
2024-12-06 03:30:14 INFO tasks.py:242 Setup value is: True
2024-12-06 03:30:14 ERROR tasks.py:269 Traceback (most recent call last):
File "/home/ibladmin/Documents/PYTHON/SPIKE_SORTING/ibl-sorter/.venv/lib/python3.11/site-packages/ibllib/pipes/tasks.py", line 259, in run
outputs = self._run(**kwargs)
^^^^^^^^^^^^^^^^^^^
File "/home/ibladmin/Documents/PYTHON/SPIKE_SORTING/ibl-sorter/.venv/lib/python3.11/site-packages/ibllib/pipes/ephys_tasks.py", line 772, in _run
sorter_dir = self._run_iblsort(ap_file) # runs the sorter, skips if it already ran
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ibladmin/Documents/PYTHON/SPIKE_SORTING/ibl-sorter/.venv/lib/python3.11/site-packages/ibllib/pipes/ephys_tasks.py", line 718, in _run_iblsort
run_version = self._fetch_iblsorter_run_version(log_file)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ibladmin/Documents/PYTHON/SPIKE_SORTING/ibl-sorter/.venv/lib/python3.11/site-packages/ibllib/pipes/ephys_tasks.py", line 703, in _fetch_iblsorter_run_version
version = re.sub(r'\x1B(?:[@-Z\\-_]|\[[0-?]*[ -/]*[@-~])', '', version.group(1))
^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'group'
2024-12-06 03:30:14 INFO tasks.py:270 Job <class 'ibllib.pipes.ephys_tasks.SpikeSorting'> errored
2024-12-06 03:30:14 INFO tasks.py:284 N outputs: 0
2024-12-06 03:30:14 INFO tasks.py:285 --- 0.2926473617553711 seconds run-time ---
(.venv) (base) ibladmin@iblserver:/mnt/s0/spikesorting$ ls
Sometimes the version number can't be read correctly from the log file. Should there be a marker file ? At the very least there should be some error management here.
The text was updated successfully, but these errors were encountered:
Sometimes the version number can't be read correctly from the log file. Should there be a marker file ? At the very least there should be some error management here.
The text was updated successfully, but these errors were encountered: