diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index ff02d81473..bf47198a4c 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -27,9 +27,10 @@ jobs:
secrets:
REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
with:
+ install-deps-from-package-repositories: "R-universe=https://pharmaverse.r-universe.dev/,CRAN=https://cloud.r-project.org/"
package-subdirectory: package
additional-env-vars: |
- _R_CHECK_CRAN_INCOMING_REMOTE_=false
+ NOT_CRAN=true
QUARTO_PROFILE=development
concurrency-group: development
r-cmd-stable:
@@ -42,8 +43,8 @@ jobs:
install-deps-from-package-repositories: "R-universe=https://insightsengineering.r-universe.dev/,CRAN=https://cloud.r-project.org/"
package-subdirectory: package
additional-env-vars: |
- _R_CHECK_CRAN_INCOMING_REMOTE_=false
- QUARTO_PROFILE=stable
+ NOT_CRAN=true
+ QUARTO_PROFILE=stable
concurrency-group: stable
linter:
if: github.event_name != 'push'
@@ -53,6 +54,8 @@ jobs:
if: github.event_name != 'push'
name: Check URLs 🌐
uses: insightsengineering/r.pkg.template/.github/workflows/links.yaml@main
+ with:
+ package-subdirectory: package
vbump:
name: Version Bump 🤜🤛
if: github.event_name == 'push'
diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v1.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v1.svg
deleted file mode 100644
index c4afd9cba9..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v1.svg
+++ /dev/null
@@ -1,147 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v2.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v2.svg
deleted file mode 100644
index 79bde9f5bc..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v2.svg
+++ /dev/null
@@ -1,147 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v3.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v3.svg
deleted file mode 100644
index 16f53a1124..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v3.svg
+++ /dev/null
@@ -1,101 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v4.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v4.svg
deleted file mode 100644
index 15be3fe809..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v4.svg
+++ /dev/null
@@ -1,147 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v5.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v5.svg
deleted file mode 100644
index 4d35581773..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg01/fstg01-plot_v5.svg
+++ /dev/null
@@ -1,147 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v1.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v1.svg
deleted file mode 100644
index e6f1c6624a..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v1.svg
+++ /dev/null
@@ -1,133 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v2.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v2.svg
deleted file mode 100644
index 9f2b20f1d8..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v2.svg
+++ /dev/null
@@ -1,133 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v3.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v3.svg
deleted file mode 100644
index 483d60c71c..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v3.svg
+++ /dev/null
@@ -1,101 +0,0 @@
-
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v4.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v4.svg
deleted file mode 100644
index 8e20690b95..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-fstg02/fstg02-plot_v4.svg
+++ /dev/null
@@ -1,133 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v1.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v1.svg
deleted file mode 100644
index 951bace2e0..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v1.svg
+++ /dev/null
@@ -1,612 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v2.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v2.svg
deleted file mode 100644
index 92d3aea2af..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v2.svg
+++ /dev/null
@@ -1,612 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v3.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v3.svg
deleted file mode 100644
index 482aae1b0b..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v3.svg
+++ /dev/null
@@ -1,590 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v4.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v4.svg
deleted file mode 100644
index 311143968d..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v4.svg
+++ /dev/null
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deleted file mode 100644
index 67143fb21d..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v5.svg
+++ /dev/null
@@ -1,396 +0,0 @@
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deleted file mode 100644
index 226a647255..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-kmg01/kmg01-plot_v6.svg
+++ /dev/null
@@ -1,612 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v1.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v1.svg
deleted file mode 100644
index 73104aabd5..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v1.svg
+++ /dev/null
@@ -1,166 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v2.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v2.svg
deleted file mode 100644
index e36bc07157..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v2.svg
+++ /dev/null
@@ -1,172 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v3.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v3.svg
deleted file mode 100644
index 21094b6aad..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v3.svg
+++ /dev/null
@@ -1,332 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v4.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v4.svg
deleted file mode 100644
index 63aaf983f7..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v4.svg
+++ /dev/null
@@ -1,137 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v5.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v5.svg
deleted file mode 100644
index 0200efaede..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v5.svg
+++ /dev/null
@@ -1,2740 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v6.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg01/mmrmg01-plot_v6.svg
deleted file mode 100644
index c1dbba5a11..0000000000
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+++ /dev/null
@@ -1,2686 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg02/mmrmg02-plot_v1.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg02/mmrmg02-plot_v1.svg
deleted file mode 100644
index a656fa39bd..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg02/mmrmg02-plot_v1.svg
+++ /dev/null
@@ -1,103 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg02/mmrmg02-plot_v2.svg b/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg02/mmrmg02-plot_v2.svg
deleted file mode 100644
index 04d4db607e..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-efficacy-mmrmg02/mmrmg02-plot_v2.svg
+++ /dev/null
@@ -1,103 +0,0 @@
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deleted file mode 100644
index ca0f848442..0000000000
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+++ /dev/null
@@ -1,73 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-other-brg01/brg01-plot_v2.svg b/package/tests/testthat/_snaps/development/graphs-other-brg01/brg01-plot_v2.svg
deleted file mode 100644
index bdf6552120..0000000000
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@@ -1,74 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-other-brg01/brg01-plot_v3.svg b/package/tests/testthat/_snaps/development/graphs-other-brg01/brg01-plot_v3.svg
deleted file mode 100644
index ad6a07ecf3..0000000000
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+++ /dev/null
@@ -1,73 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-other-brg01/brg01-plot_v4.svg b/package/tests/testthat/_snaps/development/graphs-other-brg01/brg01-plot_v4.svg
deleted file mode 100644
index 5efbd0d7df..0000000000
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+++ /dev/null
@@ -1,70 +0,0 @@
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deleted file mode 100644
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@@ -1,81 +0,0 @@
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deleted file mode 100644
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@@ -1,77 +0,0 @@
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@@ -1,107 +0,0 @@
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deleted file mode 100644
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@@ -1,100 +0,0 @@
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deleted file mode 100644
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deleted file mode 100644
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@@ -1,124 +0,0 @@
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deleted file mode 100644
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@@ -1,91 +0,0 @@
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deleted file mode 100644
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@@ -1,216 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
@@ -1,219 +0,0 @@
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+++ /dev/null
@@ -1,145 +0,0 @@
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+++ /dev/null
@@ -1,125 +0,0 @@
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+++ /dev/null
@@ -1,103 +0,0 @@
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index 80423f9d5a..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-other-ltg01/ltg01-plot_v52.svg
+++ /dev/null
@@ -1,15025 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-other-ltg01/ltg01-plot_v53.svg b/package/tests/testthat/_snaps/development/graphs-other-ltg01/ltg01-plot_v53.svg
deleted file mode 100644
index b76e4d13bf..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-other-ltg01/ltg01-plot_v53.svg
+++ /dev/null
@@ -1,14822 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-other-mng01/mng01-plot_v1.svg b/package/tests/testthat/_snaps/development/graphs-other-mng01/mng01-plot_v1.svg
deleted file mode 100644
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--- a/package/tests/testthat/_snaps/development/graphs-other-mng01/mng01-plot_v1.svg
+++ /dev/null
@@ -1,130 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-other-mng01/mng01-plot_v2.svg b/package/tests/testthat/_snaps/development/graphs-other-mng01/mng01-plot_v2.svg
deleted file mode 100644
index 3c6b190b16..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-other-mng01/mng01-plot_v2.svg
+++ /dev/null
@@ -1,134 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
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+++ /dev/null
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deleted file mode 100644
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+++ /dev/null
@@ -1,149 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-pharmacokinetic-pkcg01/pkcg01-plot_v1.svg b/package/tests/testthat/_snaps/development/graphs-pharmacokinetic-pkcg01/pkcg01-plot_v1.svg
deleted file mode 100644
index cd7e5edb94..0000000000
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+++ /dev/null
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+++ /dev/null
@@ -1,82 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
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deleted file mode 100644
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+++ /dev/null
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deleted file mode 100644
index af6069ed4e..0000000000
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+++ /dev/null
@@ -1,154 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
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+++ /dev/null
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deleted file mode 100644
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+++ /dev/null
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deleted file mode 100644
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+++ /dev/null
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deleted file mode 100644
index f89c5db8cb..0000000000
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+++ /dev/null
@@ -1,861 +0,0 @@
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deleted file mode 100644
index 4cdca4c7ae..0000000000
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+++ /dev/null
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+++ /dev/null
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+++ /dev/null
@@ -1,142 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
@@ -1,95 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
@@ -1,129 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v4.svg b/package/tests/testthat/_snaps/development/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v4.svg
deleted file mode 100644
index 95b880d95d..0000000000
--- a/package/tests/testthat/_snaps/development/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v4.svg
+++ /dev/null
@@ -1,228 +0,0 @@
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diff --git a/package/tests/testthat/_snaps/development/tables-efficacy-mmrmt01.md b/package/tests/testthat/_snaps/development/tables-efficacy-mmrmt01.md
index 3f35fd0afa..7efad52641 100644
--- a/package/tests/testthat/_snaps/development/tables-efficacy-mmrmt01.md
+++ b/package/tests/testthat/_snaps/development/tables-efficacy-mmrmt01.md
@@ -13,7 +13,7 @@
Difference in Adjusted Means (SE) 0.759 (0.973) -0.325 (0.976)
95% CI (-1.155, 2.672) (-2.243, 1.593)
Relative Increase (%) 21.8% -9.3%
- p-value (MMRM) 0.4362 0.7394
+ p-value (MMRM) 0.4362 0.7393
WEEK 2 DAY 15
n 134 134 132
Adjusted Mean (SE) 9.135 (0.768) 9.018 (0.767) 8.509 (0.773)
@@ -21,7 +21,7 @@
Difference in Adjusted Means (SE) -0.117 (1.087) -0.626 (1.090)
95% CI (-2.253, 2.020) (-2.768, 1.517)
Relative Increase (%) -1.3% -6.8%
- p-value (MMRM) 0.9146 0.5662
+ p-value (MMRM) 0.9147 0.5662
WEEK 3 DAY 22
n 134 134 132
Adjusted Mean (SE) 13.547 (0.871) 16.014 (0.871) 15.789 (0.877)
@@ -149,3 +149,32 @@
Relative Increase (%) 8.7% 4.3%
p-value (MMRM) 0.0324 0.2924
+# tables/efficacy/mmrmt01.qmd result_baseline development
+
+ Code
+ print(data_snap[[i]])
+ Output
+ Visit All Patients
+ Statistics (N=400)
+ ———————————————————————————————————————
+ WEEK 1 DAY 8
+ n 400
+ Adjusted Mean (SE) 3.615 (0.620)
+ 95% CI (2.396, 4.834)
+ WEEK 2 DAY 15
+ n 400
+ Adjusted Mean (SE) 8.870 (0.602)
+ 95% CI (7.687, 10.053)
+ WEEK 3 DAY 22
+ n 400
+ Adjusted Mean (SE) 15.094 (0.683)
+ 95% CI (13.751, 16.437)
+ WEEK 4 DAY 29
+ n 400
+ Adjusted Mean (SE) 19.009 (0.717)
+ 95% CI (17.599, 20.418)
+ WEEK 5 DAY 36
+ n 400
+ Adjusted Mean (SE) 24.028 (0.747)
+ 95% CI (22.560, 25.496)
+
diff --git a/package/tests/testthat/_snaps/development/tables-efficacy-rbmit01.md b/package/tests/testthat/_snaps/development/tables-efficacy-rbmit01.md
index 6d60b03535..22d838ab26 100644
--- a/package/tests/testthat/_snaps/development/tables-efficacy-rbmit01.md
+++ b/package/tests/testthat/_snaps/development/tables-efficacy-rbmit01.md
@@ -13,24 +13,24 @@
Relative Reduction (%) 5.7%
p-value (RBMI) 0.8932
5
- Adjusted Mean (SE) -4.247 (0.649) -2.815 (0.646)
- 95% CI (-5.527, -2.966) (-4.091, -1.540)
- Difference in Adjusted Means (SE) 1.431 (0.915)
- 95% CI (-0.377, 3.239)
- Relative Reduction (%) -33.7%
- p-value (RBMI) 0.1200
+ Adjusted Mean (SE) -4.251 (0.647) -2.805 (0.644)
+ 95% CI (-5.528, -2.974) (-4.077, -1.533)
+ Difference in Adjusted Means (SE) 1.446 (0.914)
+ 95% CI (-0.358, 3.250)
+ Relative Reduction (%) -34.0%
+ p-value (RBMI) 0.1155
6
- Adjusted Mean (SE) -6.388 (0.724) -4.115 (0.692)
- 95% CI (-7.820, -4.956) (-5.481, -2.748)
- Difference in Adjusted Means (SE) 2.274 (1.005)
- 95% CI (0.287, 4.261)
- Relative Reduction (%) -35.6%
- p-value (RBMI) 0.0252
+ Adjusted Mean (SE) -6.366 (0.721) -4.095 (0.696)
+ 95% CI (-7.793, -4.939) (-5.471, -2.720)
+ Difference in Adjusted Means (SE) 2.270 (0.996)
+ 95% CI (0.301, 4.239)
+ Relative Reduction (%) -35.7%
+ p-value (RBMI) 0.0241
7
- Adjusted Mean (SE) -7.649 (0.792) -4.812 (0.764)
- 95% CI (-9.217, -6.081) (-6.323, -3.301)
- Difference in Adjusted Means (SE) 2.836 (1.121)
- 95% CI (0.617, 5.056)
- Relative Reduction (%) -37.1%
- p-value (RBMI) 0.0127
+ Adjusted Mean (SE) -7.689 (0.797) -4.776 (0.752)
+ 95% CI (-9.266, -6.112) (-6.261, -3.290)
+ Difference in Adjusted Means (SE) 2.913 (1.073)
+ 95% CI (0.792, 5.035)
+ Relative Reduction (%) -37.9%
+ p-value (RBMI) 0.0074
diff --git a/package/tests/testthat/_snaps/stable/graphs-efficacy-fstg01/fstg01-plot_v1.svg b/package/tests/testthat/_snaps/stable/graphs-efficacy-fstg01/fstg01-plot_v1.svg
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@@ -1,121 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
@@ -1,121 +0,0 @@
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+++ /dev/null
@@ -1,968 +0,0 @@
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deleted file mode 100644
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+++ /dev/null
@@ -1,968 +0,0 @@
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+++ /dev/null
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+++ /dev/null
@@ -1,752 +0,0 @@
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--- a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg04/pkpg04-plot_v1.svg
+++ /dev/null
@@ -1,2575 +0,0 @@
-
-
diff --git a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v1.svg b/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v1.svg
deleted file mode 100644
index 343e9e4a4f..0000000000
--- a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v1.svg
+++ /dev/null
@@ -1,142 +0,0 @@
-
-
diff --git a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v2.svg b/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v2.svg
deleted file mode 100644
index 63cd8130ca..0000000000
--- a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v2.svg
+++ /dev/null
@@ -1,95 +0,0 @@
-
-
diff --git a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v3.svg b/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v3.svg
deleted file mode 100644
index dbfd87691a..0000000000
--- a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v3.svg
+++ /dev/null
@@ -1,129 +0,0 @@
-
-
diff --git a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v4.svg b/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v4.svg
deleted file mode 100644
index 95b880d95d..0000000000
--- a/package/tests/testthat/_snaps/stable/graphs-pharmacokinetic-pkpg06/pkpg06-plot_v4.svg
+++ /dev/null
@@ -1,228 +0,0 @@
-
-
diff --git a/package/tests/testthat/_snaps/stable/tables-efficacy-mmrmt01.md b/package/tests/testthat/_snaps/stable/tables-efficacy-mmrmt01.md
index 7651df082f..138240e761 100644
--- a/package/tests/testthat/_snaps/stable/tables-efficacy-mmrmt01.md
+++ b/package/tests/testthat/_snaps/stable/tables-efficacy-mmrmt01.md
@@ -149,3 +149,32 @@
Relative Increase (%) 8.7% 4.3%
p-value (MMRM) 0.0324 0.2924
+# tables/efficacy/mmrmt01.qmd result_baseline stable
+
+ Code
+ print(data_snap[[i]])
+ Output
+ Visit All Patients
+ Statistics (N=400)
+ ———————————————————————————————————————
+ WEEK 1 DAY 8
+ n 400
+ Adjusted Mean (SE) 3.615 (0.620)
+ 95% CI (2.396, 4.834)
+ WEEK 2 DAY 15
+ n 400
+ Adjusted Mean (SE) 8.870 (0.602)
+ 95% CI (7.687, 10.053)
+ WEEK 3 DAY 22
+ n 400
+ Adjusted Mean (SE) 15.094 (0.683)
+ 95% CI (13.751, 16.437)
+ WEEK 4 DAY 29
+ n 400
+ Adjusted Mean (SE) 19.009 (0.717)
+ 95% CI (17.599, 20.418)
+ WEEK 5 DAY 36
+ n 400
+ Adjusted Mean (SE) 24.028 (0.747)
+ 95% CI (22.560, 25.496)
+
diff --git a/package/tests/testthat/_snaps/stable/tables-efficacy-rbmit01.md b/package/tests/testthat/_snaps/stable/tables-efficacy-rbmit01.md
index 4242c9d782..d51404e2af 100644
--- a/package/tests/testthat/_snaps/stable/tables-efficacy-rbmit01.md
+++ b/package/tests/testthat/_snaps/stable/tables-efficacy-rbmit01.md
@@ -13,24 +13,24 @@
Relative Reduction (%) 5.7%
p-value (RBMI) 0.8932
5
- Adjusted Mean (SE) -4.241 (0.646) -2.814 (0.643)
- 95% CI (-5.537, -2.984) (-4.084, -1.545)
- Difference in Adjusted Means (SE) 1.447 (0.915)
- 95% CI (-0.360, 3.254)
+ Adjusted Mean (SE) -4.251 (0.647) -2.805 (0.644)
+ 95% CI (-5.528, -2.974) (-4.077, -1.533)
+ Difference in Adjusted Means (SE) 1.446 (0.914)
+ 95% CI (-0.358, 3.250)
Relative Reduction (%) -34.0%
- p-value (RBMI) 0.1159
+ p-value (RBMI) 0.1155
6
- Adjusted Mean (SE) -6.365 (0.721) -4.123 (0.689)
- 95% CI (-7.791, -4.939) (-5.484, -2.761)
- Difference in Adjusted Means (SE) 2.242 (0.998)
- 95% CI (0.269, 4.216)
- Relative Reduction (%) -35.2%
- p-value (RBMI) 0.0262
+ Adjusted Mean (SE) -6.366 (0.721) -4.095 (0.696)
+ 95% CI (-7.793, -4.939) (-5.471, -2.720)
+ Difference in Adjusted Means (SE) 2.270 (0.996)
+ 95% CI (0.301, 4.239)
+ Relative Reduction (%) -35.7%
+ p-value (RBMI) 0.0241
7
- Adjusted Mean (SE) -7.665 (0.831) -4.802 (0.762)
- 95% CI (-9.314, -6.017) (-6.308, -3.296)
- Difference in Adjusted Means (SE) 2.863 (1.120)
- 95% CI (0.645, 5.082)
- Relative Reduction (%) -37.4%
- p-value (RBMI) 0.0118
+ Adjusted Mean (SE) -7.689 (0.797) -4.776 (0.752)
+ 95% CI (-9.266, -6.112) (-6.261, -3.290)
+ Difference in Adjusted Means (SE) 2.913 (1.073)
+ 95% CI (0.792, 5.035)
+ Relative Reduction (%) -37.9%
+ p-value (RBMI) 0.0074
diff --git a/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11.md b/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11.md
index 32c8a8d526..7a4c838705 100644
--- a/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11.md
+++ b/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11.md
@@ -66,9 +66,9 @@
Hazard Ratio 0.43 0.58
95% CI (0.19, 0.94) (0.26, 1.27)
Stratified By: RACE, SEX
- p-value (log-rank) 0.0295 0.1687
- Hazard Ratio 0.43 0.58
- 95% CI (0.19, 0.94) (0.26, 1.27)
+ p-value (log-rank) 0.0858 0.1605
+ Hazard Ratio 0.51 0.57
+ 95% CI (0.23, 1.12) (0.26, 1.26)
———————————————————————————————————————————————————————————————————————————————————————
{1} - Censored observations: range minimum & maximum
diff --git a/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11_bl.md b/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11_bl.md
index 23e0c6119b..513d6f6e2f 100644
--- a/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11_bl.md
+++ b/package/tests/testthat/_snaps/stable/tables-lab-results-lbt11_bl.md
@@ -64,9 +64,9 @@
Hazard Ratio 1.27 0.84
95% CI (0.63, 2.56) (0.40, 1.75)
Stratified By: RACE, SEX
- p-value (log-rank) 0.0858 0.1605
- Hazard Ratio 0.51 0.57
- 95% CI (0.23, 1.12) (0.26, 1.26)
+ p-value (log-rank) 0.3886 0.7970
+ Hazard Ratio 1.39 0.91
+ 95% CI (0.65, 2.97) (0.43, 1.93)
———————————————————————————————————————————————————————————————————————————————————————
{1} - Censored observations: range minimum & maximum