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Output

@@ -1540,7 +1540,7 @@ @@ -1620,7 +1620,7 @@ @@ -1682,7 +1682,7 @@ @@ -1747,7 +1747,7 @@ @@ -1821,7 +1821,7 @@ @@ -2180,9 +2180,9 @@
diff --git a/stable/graphs/efficacy/fstg02.html b/stable/graphs/efficacy/fstg02.html index 49a2814bd..7bd160c2e 100644 --- a/stable/graphs/efficacy/fstg02.html +++ b/stable/graphs/efficacy/fstg02.html @@ -1471,7 +1471,7 @@

Output

@@ -1553,7 +1553,7 @@ @@ -1640,7 +1640,7 @@ @@ -1716,7 +1716,7 @@ @@ -1795,7 +1795,7 @@ @@ -2184,9 +2184,9 @@
diff --git a/stable/graphs/efficacy/kmg01.html b/stable/graphs/efficacy/kmg01.html index 04609719d..e9731ebf3 100644 --- a/stable/graphs/efficacy/kmg01.html +++ b/stable/graphs/efficacy/kmg01.html @@ -1471,7 +1471,7 @@

Output

@@ -1533,7 +1533,7 @@ @@ -1589,7 +1589,7 @@ @@ -1642,7 +1642,7 @@ @@ -1697,7 +1697,7 @@ @@ -1753,7 +1753,7 @@ @@ -1814,7 +1814,7 @@ @@ -2153,9 +2153,9 @@
diff --git a/stable/graphs/other/brg01.html b/stable/graphs/other/brg01.html index cb9a69e24..a665e64de 100644 --- a/stable/graphs/other/brg01.html +++ b/stable/graphs/other/brg01.html @@ -1465,7 +1465,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1599,7 +1599,7 @@ @@ -1661,7 +1661,7 @@ @@ -1719,7 +1719,7 @@ @@ -1804,7 +1804,7 @@ @@ -1870,7 +1870,7 @@ @@ -1935,7 +1935,7 @@ @@ -2039,7 +2039,7 @@ @@ -2109,7 +2109,7 @@ @@ -2249,9 +2249,9 @@
diff --git a/stable/graphs/other/bwg01.html b/stable/graphs/other/bwg01.html index f864ecc4c..9601e4e07 100644 --- a/stable/graphs/other/bwg01.html +++ b/stable/graphs/other/bwg01.html @@ -1471,7 +1471,7 @@

Output

@@ -1542,7 +1542,7 @@ @@ -1605,7 +1605,7 @@ @@ -1669,7 +1669,7 @@ @@ -1744,7 +1744,7 @@ @@ -1804,7 +1804,7 @@ @@ -1881,7 +1881,7 @@ @@ -1952,7 +1952,7 @@ @@ -2060,7 +2060,7 @@ @@ -2121,7 +2121,7 @@ @@ -2611,9 +2611,9 @@
diff --git a/stable/graphs/other/cig01.html b/stable/graphs/other/cig01.html index 8c99b9301..ddd19bf95 100644 --- a/stable/graphs/other/cig01.html +++ b/stable/graphs/other/cig01.html @@ -1471,7 +1471,7 @@

Output

@@ -1550,7 +1550,7 @@ @@ -1621,7 +1621,7 @@ @@ -1693,7 +1693,7 @@ @@ -1765,7 +1765,7 @@ @@ -1817,7 +1817,7 @@ @@ -2189,9 +2189,9 @@
diff --git a/stable/graphs/other/ippg01.html b/stable/graphs/other/ippg01.html index 8ef8e18cf..4dd2e3f8e 100644 --- a/stable/graphs/other/ippg01.html +++ b/stable/graphs/other/ippg01.html @@ -1472,7 +1472,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1625,7 +1625,7 @@ @@ -1997,9 +1997,9 @@
diff --git a/stable/graphs/other/ltg01.html b/stable/graphs/other/ltg01.html index 92e9217fb..99bdc160d 100644 --- a/stable/graphs/other/ltg01.html +++ b/stable/graphs/other/ltg01.html @@ -1466,7 +1466,7 @@

Output

@@ -1532,7 +1532,7 @@ @@ -1586,7 +1586,7 @@ @@ -1639,7 +1639,7 @@ @@ -1681,7 +1681,7 @@

Basic Plot

@@ -1747,7 +1747,7 @@ @@ -1803,7 +1803,7 @@ @@ -1859,7 +1859,7 @@ @@ -1916,7 +1916,7 @@ @@ -2088,9 +2088,9 @@
diff --git a/stable/graphs/other/mng01.html b/stable/graphs/other/mng01.html index d14fcd47c..24a8d4ecc 100644 --- a/stable/graphs/other/mng01.html +++ b/stable/graphs/other/mng01.html @@ -1471,7 +1471,7 @@

Output

@@ -1533,7 +1533,7 @@ @@ -1587,7 +1587,7 @@ @@ -1642,7 +1642,7 @@ @@ -1696,7 +1696,7 @@ @@ -1749,7 +1749,7 @@ @@ -1802,7 +1802,7 @@ @@ -1858,7 +1858,7 @@ @@ -2145,9 +2145,9 @@
diff --git a/stable/graphs/pharmacokinetic/pkcg01.html b/stable/graphs/pharmacokinetic/pkcg01.html index f7007eccc..143970842 100644 --- a/stable/graphs/pharmacokinetic/pkcg01.html +++ b/stable/graphs/pharmacokinetic/pkcg01.html @@ -1465,7 +1465,7 @@

Output

@@ -1542,7 +1542,7 @@ @@ -1616,7 +1616,7 @@ @@ -1739,7 +1739,7 @@
diff --git a/stable/graphs/pharmacokinetic/pkcg02.html b/stable/graphs/pharmacokinetic/pkcg02.html index b332448d5..6f55aa34b 100644 --- a/stable/graphs/pharmacokinetic/pkcg02.html +++ b/stable/graphs/pharmacokinetic/pkcg02.html @@ -1465,7 +1465,7 @@

Output

@@ -1542,7 +1542,7 @@ @@ -1617,7 +1617,7 @@ @@ -1738,9 +1738,9 @@
diff --git a/stable/graphs/pharmacokinetic/pkcg03.html b/stable/graphs/pharmacokinetic/pkcg03.html index 18eb7fe0d..4d8fe99f0 100644 --- a/stable/graphs/pharmacokinetic/pkcg03.html +++ b/stable/graphs/pharmacokinetic/pkcg03.html @@ -1465,7 +1465,7 @@

Output

@@ -1543,7 +1543,7 @@ @@ -1625,7 +1625,7 @@ @@ -1755,9 +1755,9 @@
diff --git a/stable/graphs/pharmacokinetic/pkpg01.html b/stable/graphs/pharmacokinetic/pkpg01.html index 199ad2550..74eaff020 100644 --- a/stable/graphs/pharmacokinetic/pkpg01.html +++ b/stable/graphs/pharmacokinetic/pkpg01.html @@ -1465,7 +1465,7 @@

Output

@@ -1551,7 +1551,7 @@ @@ -1650,7 +1650,7 @@ @@ -1792,9 +1792,9 @@
diff --git a/stable/graphs/pharmacokinetic/pkpg02.html b/stable/graphs/pharmacokinetic/pkpg02.html index 5afb84b76..68a9a8bbc 100644 --- a/stable/graphs/pharmacokinetic/pkpg02.html +++ b/stable/graphs/pharmacokinetic/pkpg02.html @@ -1465,7 +1465,7 @@

Output

@@ -1572,7 +1572,7 @@ @@ -1653,7 +1653,7 @@ @@ -1802,9 +1802,9 @@
diff --git a/stable/graphs/pharmacokinetic/pkpg03.html b/stable/graphs/pharmacokinetic/pkpg03.html index 19b0fe18a..c86853a5a 100644 --- a/stable/graphs/pharmacokinetic/pkpg03.html +++ b/stable/graphs/pharmacokinetic/pkpg03.html @@ -1465,7 +1465,7 @@

Output

@@ -1547,7 +1547,7 @@ @@ -1668,9 +1668,9 @@
diff --git a/stable/graphs/pharmacokinetic/pkpg04.html b/stable/graphs/pharmacokinetic/pkpg04.html index 99db893a5..200016033 100644 --- a/stable/graphs/pharmacokinetic/pkpg04.html +++ b/stable/graphs/pharmacokinetic/pkpg04.html @@ -1465,7 +1465,7 @@

Output

@@ -1548,7 +1548,7 @@ @@ -1672,9 +1672,9 @@
diff --git a/stable/graphs/pharmacokinetic/pkpg06.html b/stable/graphs/pharmacokinetic/pkpg06.html index 35a2145ff..037c6c934 100644 --- a/stable/graphs/pharmacokinetic/pkpg06.html +++ b/stable/graphs/pharmacokinetic/pkpg06.html @@ -1464,7 +1464,7 @@

Output

@@ -1553,7 +1553,7 @@ @@ -1635,7 +1635,7 @@ @@ -1705,7 +1705,7 @@ @@ -1807,7 +1807,7 @@ @@ -1966,9 +1966,9 @@
diff --git a/stable/listings/ADA/adal02.html b/stable/listings/ADA/adal02.html index 1fa940615..72db07770 100644 --- a/stable/listings/ADA/adal02.html +++ b/stable/listings/ADA/adal02.html @@ -1465,7 +1465,7 @@

Output

@@ -1573,7 +1573,7 @@ @@ -1756,9 +1756,9 @@
diff --git a/stable/listings/ECG/egl01.html b/stable/listings/ECG/egl01.html index c5a6ac149..21951cc74 100644 --- a/stable/listings/ECG/egl01.html +++ b/stable/listings/ECG/egl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1713,9 +1713,9 @@
diff --git a/stable/listings/adverse-events/ael01.html b/stable/listings/adverse-events/ael01.html index 4aba998da..df8812b70 100644 --- a/stable/listings/adverse-events/ael01.html +++ b/stable/listings/adverse-events/ael01.html @@ -1465,7 +1465,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1647,9 +1647,9 @@
diff --git a/stable/listings/adverse-events/ael01_nollt.html b/stable/listings/adverse-events/ael01_nollt.html index a97ec4952..eb62ffa2f 100644 --- a/stable/listings/adverse-events/ael01_nollt.html +++ b/stable/listings/adverse-events/ael01_nollt.html @@ -1465,7 +1465,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1646,9 +1646,9 @@
diff --git a/stable/listings/adverse-events/ael02.html b/stable/listings/adverse-events/ael02.html index 641601e82..f7325b555 100644 --- a/stable/listings/adverse-events/ael02.html +++ b/stable/listings/adverse-events/ael02.html @@ -1465,7 +1465,7 @@

Output

@@ -1564,7 +1564,7 @@ @@ -1711,9 +1711,9 @@
diff --git a/stable/listings/adverse-events/ael02_ed.html b/stable/listings/adverse-events/ael02_ed.html index 2542866de..b2b8db868 100644 --- a/stable/listings/adverse-events/ael02_ed.html +++ b/stable/listings/adverse-events/ael02_ed.html @@ -1465,7 +1465,7 @@

Output

@@ -1564,7 +1564,7 @@ @@ -1731,9 +1731,9 @@
diff --git a/stable/listings/adverse-events/ael03.html b/stable/listings/adverse-events/ael03.html index df4ad296f..62d9fc711 100644 --- a/stable/listings/adverse-events/ael03.html +++ b/stable/listings/adverse-events/ael03.html @@ -1465,7 +1465,7 @@

Output

@@ -1514,7 +1514,7 @@ Event MedDRA Drug Day of Duration Extreme Study Outcome Treatment Taken as Serious Treatment Center/Patient ID Age/Sex/Race Preferred Term Administration Onset in Days Intensity Drug (1) for AE (2) (3) ———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— -A: Drug X BRA-1/id-134 47/M/WHITE dcd A.1.1.1.2 04NOV2020 321 149 MODERATE No 5 Yes 2 4 +A: Drug X BRA-1/id-134 47/M/WHITE dcd A.1.1.1.2 04NOV2020 321 149 MODERATE No 5 Yes 2 4, 5 dcd A.1.1.1.2 04NOV2020 393 43 MODERATE No 5 No 5 5 BRA-1/id-42 36/M/BLACK OR AFRICAN AMERICAN dcd D.1.1.1.1 01JAN2020 64 630 SEVERE Yes 1 No 6 1 dcd A.1.1.1.2 01JAN2020 160 259 MODERATE No 2 Yes 2 4 @@ -1574,7 +1574,7 @@ @@ -1587,60 +1587,64 @@ library(rlistings) adae <- random.cdisc.data::cadae - -out <- adae %>% - filter(AESER == "Y") %>% - mutate( - CPID = paste(SITEID, SUBJID, sep = "/"), - ASR = paste(AGE, SEX, RACE, sep = "/"), - Date_First = toupper(format(as.Date(TRTSDTM), "%d%b%Y")), - Duration = AENDY - ASTDY + 1, - Related = ifelse(AEREL == "Y", "Yes", ifelse(AEREL == "N", "No", "")), - Outcome = case_when( - AEOUT == "FATAL" ~ 1, - AEOUT == "NOT RECOVERED/NOT RESOLVED" ~ 2, - AEOUT == "RECOVERED/RESOLVED" ~ 3, - AEOUT == "RECOVERED/RESOLVED WITH SEQUELAE" ~ 4, - AEOUT == "RECOVERING/RESOLVING" ~ 5, - AEOUT == "UNKNOWN" ~ 6 - ), - Treated = ifelse(AECONTRT == "Y", "Yes", ifelse(AECONTRT == "N", "No", "")), - Action = case_when( - AEACN == "DOSE INCREASED" ~ 1, - AEACN == "DOSE NOT CHANGED" ~ 2, - AEACN == "DOSE REDUCED" | AEACN == "DOSE RATE REDUCED" ~ 3, - AEACN == "DRUG INTERRUPTED" ~ 4, - AEACN == "DRUG WITHDRAWN" ~ 5, - AEACN == "NOT APPLICABLE" | AEACN == "NOT EVALUABLE" ~ 6, - AEACN == "UNKNOWN" ~ 7 - ), - SERREAS = case_when( - AESDTH == "Y" ~ "1", - AESLIFE == "Y" ~ "2", - AESHOSP == "Y" ~ "3", - AESDISAB == "Y" ~ "4", - AESCONG == "Y" ~ "5", - AESMIE == "Y" ~ "6", - TRUE ~ " " - ) - ) %>% - select(CPID, ASR, TRT01A, AEDECOD, Date_First, ASTDY, Duration, AESEV, Related, Outcome, Treated, Action, SERREAS) - -var_labels(out) <- c( - CPID = "Center/Patient ID", - ASR = "Age/Sex/Race", - TRT01A = "Treatment", - AEDECOD = "Adverse\nEvent MedDRA\nPreferred Term", - Date_First = "Date of\nFirst Study\nDrug\nAdministration", - ASTDY = "Study\nDay of\nOnset", - Duration = "AE\nDuration\nin Days", - AESEV = "Most\nExtreme\nIntensity", - Related = "Caused by\nStudy\nDrug", - Outcome = "Outcome\n(1)", - Treated = "Treatment\nfor AE", - Action = "Action\nTaken\n(2)", - SERREAS = "Reason\nClassified\nas Serious\n(3)" -) +adae$AESCONG[which(adae$AESER == "Y")[seq(3)]] <- "Y" # To mimic possibility of overlap + +out <- adae %>% + filter(AESER == "Y") %>% + mutate( + CPID = paste(SITEID, SUBJID, sep = "/"), + ASR = paste(AGE, SEX, RACE, sep = "/"), + Date_First = toupper(format(as.Date(TRTSDTM), "%d%b%Y")), + Duration = AENDY - ASTDY + 1, + Related = ifelse(AEREL == "Y", "Yes", ifelse(AEREL == "N", "No", "")), + Outcome = case_when( + AEOUT == "FATAL" ~ 1, + AEOUT == "NOT RECOVERED/NOT RESOLVED" ~ 2, + AEOUT == "RECOVERED/RESOLVED" ~ 3, + AEOUT == "RECOVERED/RESOLVED WITH SEQUELAE" ~ 4, + AEOUT == "RECOVERING/RESOLVING" ~ 5, + AEOUT == "UNKNOWN" ~ 6 + ), + Treated = ifelse(AECONTRT == "Y", "Yes", ifelse(AECONTRT == "N", "No", "")), + Action = case_when( + AEACN == "DOSE INCREASED" ~ 1, + AEACN == "DOSE NOT CHANGED" ~ 2, + AEACN == "DOSE REDUCED" | AEACN == "DOSE RATE REDUCED" ~ 3, + AEACN == "DRUG INTERRUPTED" ~ 4, + AEACN == "DRUG WITHDRAWN" ~ 5, + AEACN == "NOT APPLICABLE" | AEACN == "NOT EVALUABLE" ~ 6, + AEACN == "UNKNOWN" ~ 7 + ) + ) %>% + rowwise() %>% + mutate( + SERREAS = paste( + which( + c(AESDTH, AESLIFE, AESHOSP, AESDISAB, AESCONG, AESMIE) == "Y" + ), + collapse = ", " + ) + ) %>% + ungroup() + +out <- out %>% + select(CPID, ASR, TRT01A, AEDECOD, Date_First, ASTDY, Duration, AESEV, Related, Outcome, Treated, Action, SERREAS) + +var_labels(out) <- c( + CPID = "Center/Patient ID", + ASR = "Age/Sex/Race", + TRT01A = "Treatment", + AEDECOD = "Adverse\nEvent MedDRA\nPreferred Term", + Date_First = "Date of\nFirst Study\nDrug\nAdministration", + ASTDY = "Study\nDay of\nOnset", + Duration = "AE\nDuration\nin Days", + AESEV = "Most\nExtreme\nIntensity", + Related = "Caused by\nStudy\nDrug", + Outcome = "Outcome\n(1)", + Treated = "Treatment\nfor AE", + Action = "Action\nTaken\n(2)", + SERREAS = "Reason\nClassified\nas Serious\n(3)" +) @@ -1650,7 +1654,7 @@

Timestamp

-
[1] "2024-11-30 18:02:15 UTC"
+
[1] "2024-12-02 15:34:34 UTC"

Session Info

@@ -1666,7 +1670,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-30 + date 2024-12-02 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1730,9 +1734,9 @@
@@ -2392,117 +2396,121 @@ library(rlistings) adae <- random.cdisc.data::cadae - -out <- adae %>% - filter(AESER == "Y") %>% - mutate( - CPID = paste(SITEID, SUBJID, sep = "/"), - ASR = paste(AGE, SEX, RACE, sep = "/"), - Date_First = toupper(format(as.Date(TRTSDTM), "%d%b%Y")), - Duration = AENDY - ASTDY + 1, - Related = ifelse(AEREL == "Y", "Yes", ifelse(AEREL == "N", "No", "")), - Outcome = case_when( - AEOUT == "FATAL" ~ 1, - AEOUT == "NOT RECOVERED/NOT RESOLVED" ~ 2, - AEOUT == "RECOVERED/RESOLVED" ~ 3, - AEOUT == "RECOVERED/RESOLVED WITH SEQUELAE" ~ 4, - AEOUT == "RECOVERING/RESOLVING" ~ 5, - AEOUT == "UNKNOWN" ~ 6 - ), - Treated = ifelse(AECONTRT == "Y", "Yes", ifelse(AECONTRT == "N", "No", "")), - Action = case_when( - AEACN == "DOSE INCREASED" ~ 1, - AEACN == "DOSE NOT CHANGED" ~ 2, - AEACN == "DOSE REDUCED" | AEACN == "DOSE RATE REDUCED" ~ 3, - AEACN == "DRUG INTERRUPTED" ~ 4, - AEACN == "DRUG WITHDRAWN" ~ 5, - AEACN == "NOT APPLICABLE" | AEACN == "NOT EVALUABLE" ~ 6, - AEACN == "UNKNOWN" ~ 7 - ), - SERREAS = case_when( - AESDTH == "Y" ~ "1", - AESLIFE == "Y" ~ "2", - AESHOSP == "Y" ~ "3", - AESDISAB == "Y" ~ "4", - AESCONG == "Y" ~ "5", - AESMIE == "Y" ~ "6", - TRUE ~ " " - ) - ) %>% - select(CPID, ASR, TRT01A, AEDECOD, Date_First, ASTDY, Duration, AESEV, Related, Outcome, Treated, Action, SERREAS) - -var_labels(out) <- c( - CPID = "Center/Patient ID", - ASR = "Age/Sex/Race", - TRT01A = "Treatment", - AEDECOD = "Adverse\nEvent MedDRA\nPreferred Term", - Date_First = "Date of\nFirst Study\nDrug\nAdministration", - ASTDY = "Study\nDay of\nOnset", - Duration = "AE\nDuration\nin Days", - AESEV = "Most\nExtreme\nIntensity", - Related = "Caused by\nStudy\nDrug", - Outcome = "Outcome\n(1)", - Treated = "Treatment\nfor AE", - Action = "Action\nTaken\n(2)", - SERREAS = "Reason\nClassified\nas Serious\n(3)" -) -``` - -```{r include = FALSE} -webr_code_labels <- c("setup") +adae$AESCONG[which(adae$AESER == "Y")[seq(3)]] <- "Y" # To mimic possibility of overlap + +out <- adae %>% + filter(AESER == "Y") %>% + mutate( + CPID = paste(SITEID, SUBJID, sep = "/"), + ASR = paste(AGE, SEX, RACE, sep = "/"), + Date_First = toupper(format(as.Date(TRTSDTM), "%d%b%Y")), + Duration = AENDY - ASTDY + 1, + Related = ifelse(AEREL == "Y", "Yes", ifelse(AEREL == "N", "No", "")), + Outcome = case_when( + AEOUT == "FATAL" ~ 1, + AEOUT == "NOT RECOVERED/NOT RESOLVED" ~ 2, + AEOUT == "RECOVERED/RESOLVED" ~ 3, + AEOUT == "RECOVERED/RESOLVED WITH SEQUELAE" ~ 4, + AEOUT == "RECOVERING/RESOLVING" ~ 5, + AEOUT == "UNKNOWN" ~ 6 + ), + Treated = ifelse(AECONTRT == "Y", "Yes", ifelse(AECONTRT == "N", "No", "")), + Action = case_when( + AEACN == "DOSE INCREASED" ~ 1, + AEACN == "DOSE NOT CHANGED" ~ 2, + AEACN == "DOSE REDUCED" | AEACN == "DOSE RATE REDUCED" ~ 3, + AEACN == "DRUG INTERRUPTED" ~ 4, + AEACN == "DRUG WITHDRAWN" ~ 5, + AEACN == "NOT APPLICABLE" | AEACN == "NOT EVALUABLE" ~ 6, + AEACN == "UNKNOWN" ~ 7 + ) + ) %>% + rowwise() %>% + mutate( + SERREAS = paste( + which( + c(AESDTH, AESLIFE, AESHOSP, AESDISAB, AESCONG, AESMIE) == "Y" + ), + collapse = ", " + ) + ) %>% + ungroup() + +out <- out %>% + select(CPID, ASR, TRT01A, AEDECOD, Date_First, ASTDY, Duration, AESEV, Related, Outcome, Treated, Action, SERREAS) + +var_labels(out) <- c( + CPID = "Center/Patient ID", + ASR = "Age/Sex/Race", + TRT01A = "Treatment", + AEDECOD = "Adverse\nEvent MedDRA\nPreferred Term", + Date_First = "Date of\nFirst Study\nDrug\nAdministration", + ASTDY = "Study\nDay of\nOnset", + Duration = "AE\nDuration\nin Days", + AESEV = "Most\nExtreme\nIntensity", + Related = "Caused by\nStudy\nDrug", + Outcome = "Outcome\n(1)", + Treated = "Treatment\nfor AE", + Action = "Action\nTaken\n(2)", + SERREAS = "Reason\nClassified\nas Serious\n(3)" +) ``` -{{< include ../../_utils/webr_no_include.qmd >}} - -## Output +```{r include = FALSE} +webr_code_labels <- c("setup") +``` -:::: panel-tabset -## Standard Listing - -::: {.panel-tabset .nav-justified group="webr"} -## {{< fa regular file-lines sm fw >}} Preview - -```{r lsting, test = list(lsting = "lsting")} -lsting <- as_listing( - out, - key_cols = c("TRT01A", "CPID", "ASR"), - disp_cols = names(out), - main_title = "Listing of Serious Adverse Events", - main_footer = " -(1) Outcome: 1 = fatal; 2 = not recovered/not resolved; 3 = recovered/resolved; - 4 = recovered/resolved with sequelae; 5 = recovering/resolving; 6 = unknown. -(2) Action taken with study drug: 1 = dose increased; 2 = dose not changed; - 3 = dose reduced; 4 = drug interrupted; 5 = drug withdrawn; 6 = not applicable; - 7 = unknown. -(3) Reason classified as serious: 1 = resulted in death; 2 = life threatening; - 3 = required prolonged in patient hospitalization; 4 = disabling; - 5 = a congenital anomaly/birth defect in offspring of study subject; - 6 = does not meet any of the above serious criteria, but may jeopardize the subject, - and may require medical or surgical intervention to prevent one of the outcomes listed above. -* Study day derived from imputed onset date. -** Duration derived from imputed onset date and/or end date." -) - -head(lsting, 20) -``` - -```{r include = FALSE} -webr_code_labels <- c("lsting") +{{< include ../../_utils/webr_no_include.qmd >}} + +## Output + +:::: panel-tabset +## Standard Listing + +::: {.panel-tabset .nav-justified group="webr"} +## {{< fa regular file-lines sm fw >}} Preview + +```{r lsting, test = list(lsting = "lsting")} +lsting <- as_listing( + out, + key_cols = c("TRT01A", "CPID", "ASR"), + disp_cols = names(out), + main_title = "Listing of Serious Adverse Events", + main_footer = " +(1) Outcome: 1 = fatal; 2 = not recovered/not resolved; 3 = recovered/resolved; + 4 = recovered/resolved with sequelae; 5 = recovering/resolving; 6 = unknown. +(2) Action taken with study drug: 1 = dose increased; 2 = dose not changed; + 3 = dose reduced; 4 = drug interrupted; 5 = drug withdrawn; 6 = not applicable; + 7 = unknown. +(3) Reason classified as serious: 1 = resulted in death; 2 = life threatening; + 3 = required prolonged in patient hospitalization; 4 = disabling; + 5 = a congenital anomaly/birth defect in offspring of study subject; + 6 = does not meet any of the above serious criteria, but may jeopardize the subject, + and may require medical or surgical intervention to prevent one of the outcomes listed above. +* Study day derived from imputed onset date. +** Duration derived from imputed onset date and/or end date." +) + +head(lsting, 20) ``` -{{< include ../../_utils/webr.qmd >}} -::: - -## Data Setup - -```{r setup} -#| code-fold: show -``` -:::: - -{{< include ../../_utils/save_results.qmd >}} - -{{< include ../../repro.qmd >}}
+```{r include = FALSE} +webr_code_labels <- c("lsting") +``` + +{{< include ../../_utils/webr.qmd >}} +::: + +## Data Setup + +```{r setup} +#| code-fold: show +``` +:::: + +{{< include ../../_utils/save_results.qmd >}} + +{{< include ../../repro.qmd >}}