From 7b755883d04ed6d2230b7cef31d5efdd87b2dd74 Mon Sep 17 00:00:00 2001 From: cicdguy Date: Sat, 30 Nov 2024 18:10:35 +0000 Subject: [PATCH] deploy: ba49f749205612c2e4fda6882660a9aab717b99e --- .../www/lock/graphs/efficacy/fstg01.lock | 28 +- .../www/lock/graphs/efficacy/fstg02.lock | 28 +- .../www/lock/graphs/efficacy/kmg01.lock | 28 +- .../www/lock/graphs/efficacy/mmrmg01.lock | 28 +- .../www/lock/graphs/efficacy/mmrmg02.lock | 8 +- .../assets/www/lock/graphs/other/brg01.lock | 8 +- .../assets/www/lock/graphs/other/bwg01.lock | 29 +- .../assets/www/lock/graphs/other/cig01.lock | 28 +- .../assets/www/lock/graphs/other/ippg01.lock | 28 +- .../assets/www/lock/graphs/other/ltg01.lock | 28 +- .../assets/www/lock/graphs/other/mng01.lock | 28 +- .../lock/graphs/pharmacokinetic/pkcg01.lock | 8 +- .../lock/graphs/pharmacokinetic/pkcg02.lock | 8 +- .../lock/graphs/pharmacokinetic/pkcg03.lock | 8 +- .../lock/graphs/pharmacokinetic/pkpg01.lock | 8 +- .../lock/graphs/pharmacokinetic/pkpg02.lock | 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a/development/assets/www/lock/graphs/efficacy/fstg01.lock b/development/assets/www/lock/graphs/efficacy/fstg01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/efficacy/fstg01.lock +++ b/development/assets/www/lock/graphs/efficacy/fstg01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/efficacy/fstg02.lock b/development/assets/www/lock/graphs/efficacy/fstg02.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/efficacy/fstg02.lock +++ b/development/assets/www/lock/graphs/efficacy/fstg02.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/efficacy/kmg01.lock b/development/assets/www/lock/graphs/efficacy/kmg01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/efficacy/kmg01.lock +++ b/development/assets/www/lock/graphs/efficacy/kmg01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/efficacy/mmrmg01.lock b/development/assets/www/lock/graphs/efficacy/mmrmg01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/efficacy/mmrmg01.lock +++ b/development/assets/www/lock/graphs/efficacy/mmrmg01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/efficacy/mmrmg02.lock b/development/assets/www/lock/graphs/efficacy/mmrmg02.lock index 158b0064b..650028b10 100644 --- a/development/assets/www/lock/graphs/efficacy/mmrmg02.lock +++ b/development/assets/www/lock/graphs/efficacy/mmrmg02.lock @@ -582,7 +582,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -594,7 +594,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1284,7 +1284,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1298,7 +1298,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/other/brg01.lock b/development/assets/www/lock/graphs/other/brg01.lock index d4c13e577..ccf0c867e 100644 --- a/development/assets/www/lock/graphs/other/brg01.lock +++ b/development/assets/www/lock/graphs/other/brg01.lock @@ -510,7 +510,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -522,7 +522,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1096,7 +1096,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1110,7 +1110,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/other/bwg01.lock b/development/assets/www/lock/graphs/other/bwg01.lock index d818a8a22..a01d96a7d 100644 --- a/development/assets/www/lock/graphs/other/bwg01.lock +++ b/development/assets/www/lock/graphs/other/bwg01.lock @@ -823,7 +823,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -835,7 +835,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1155,14 +1155,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1585,7 +1585,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1597,7 +1597,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "proxy": { "Package": "proxy", @@ -1835,7 +1835,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1849,7 +1849,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2121,7 +2121,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2145,11 +2145,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2162,7 +2162,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2200,7 +2200,7 @@ }, "teal.modules.general": { "Package": "teal.modules.general", - "Version": "0.3.0.9054", + "Version": "0.3.0.9055", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2212,6 +2212,7 @@ "ggmosaic", "ggplot2", "grid", + "lifecycle", "scales", "shiny", "shinyTree", @@ -2233,7 +2234,7 @@ "tools", "utils" ], - "Hash": "e46fadcbcaf3cca27d9ce0bfed25d716" + "Hash": "28fcd1b5ae19990c5ff080e7a716fd07" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/other/cig01.lock b/development/assets/www/lock/graphs/other/cig01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/other/cig01.lock +++ b/development/assets/www/lock/graphs/other/cig01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/other/ippg01.lock b/development/assets/www/lock/graphs/other/ippg01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/other/ippg01.lock +++ b/development/assets/www/lock/graphs/other/ippg01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/other/ltg01.lock b/development/assets/www/lock/graphs/other/ltg01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/other/ltg01.lock +++ b/development/assets/www/lock/graphs/other/ltg01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/other/mng01.lock b/development/assets/www/lock/graphs/other/mng01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/graphs/other/mng01.lock +++ b/development/assets/www/lock/graphs/other/mng01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkcg01.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkcg01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkcg01.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkcg01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkcg02.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkcg02.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkcg02.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkcg02.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkcg03.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkcg03.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkcg03.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkcg03.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkpg01.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkpg01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkpg01.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkpg01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkpg02.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkpg02.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkpg02.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkpg02.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkpg03.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkpg03.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkpg03.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkpg03.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkpg04.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkpg04.lock index c00acaf68..69340d840 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkpg04.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkpg04.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1105,7 +1105,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1119,7 +1119,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/graphs/pharmacokinetic/pkpg06.lock b/development/assets/www/lock/graphs/pharmacokinetic/pkpg06.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/graphs/pharmacokinetic/pkpg06.lock +++ b/development/assets/www/lock/graphs/pharmacokinetic/pkpg06.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/listings/ADA/adal02.lock b/development/assets/www/lock/listings/ADA/adal02.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/ADA/adal02.lock +++ b/development/assets/www/lock/listings/ADA/adal02.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/ECG/egl01.lock b/development/assets/www/lock/listings/ECG/egl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/ECG/egl01.lock +++ b/development/assets/www/lock/listings/ECG/egl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/adverse-events/ael01.lock b/development/assets/www/lock/listings/adverse-events/ael01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/adverse-events/ael01.lock +++ b/development/assets/www/lock/listings/adverse-events/ael01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/adverse-events/ael01_nollt.lock b/development/assets/www/lock/listings/adverse-events/ael01_nollt.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/adverse-events/ael01_nollt.lock +++ b/development/assets/www/lock/listings/adverse-events/ael01_nollt.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/adverse-events/ael02.lock b/development/assets/www/lock/listings/adverse-events/ael02.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/adverse-events/ael02.lock +++ b/development/assets/www/lock/listings/adverse-events/ael02.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/adverse-events/ael02_ed.lock b/development/assets/www/lock/listings/adverse-events/ael02_ed.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/adverse-events/ael02_ed.lock +++ b/development/assets/www/lock/listings/adverse-events/ael02_ed.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/adverse-events/ael03.lock b/development/assets/www/lock/listings/adverse-events/ael03.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/adverse-events/ael03.lock +++ b/development/assets/www/lock/listings/adverse-events/ael03.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/adverse-events/ael04.lock b/development/assets/www/lock/listings/adverse-events/ael04.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/adverse-events/ael04.lock +++ b/development/assets/www/lock/listings/adverse-events/ael04.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/concomitant-medications/cml01.lock b/development/assets/www/lock/listings/concomitant-medications/cml01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/concomitant-medications/cml01.lock +++ b/development/assets/www/lock/listings/concomitant-medications/cml01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/concomitant-medications/cml02a_gl.lock b/development/assets/www/lock/listings/concomitant-medications/cml02a_gl.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/concomitant-medications/cml02a_gl.lock +++ b/development/assets/www/lock/listings/concomitant-medications/cml02a_gl.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/concomitant-medications/cml02b_gl.lock b/development/assets/www/lock/listings/concomitant-medications/cml02b_gl.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/concomitant-medications/cml02b_gl.lock +++ b/development/assets/www/lock/listings/concomitant-medications/cml02b_gl.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/development-safety-update-report/dsur4.lock b/development/assets/www/lock/listings/development-safety-update-report/dsur4.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/development-safety-update-report/dsur4.lock +++ b/development/assets/www/lock/listings/development-safety-update-report/dsur4.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/disposition/dsl01.lock b/development/assets/www/lock/listings/disposition/dsl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/disposition/dsl01.lock +++ b/development/assets/www/lock/listings/disposition/dsl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/disposition/dsl02.lock b/development/assets/www/lock/listings/disposition/dsl02.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/disposition/dsl02.lock +++ b/development/assets/www/lock/listings/disposition/dsl02.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/efficacy/oncl01.lock b/development/assets/www/lock/listings/efficacy/oncl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/efficacy/oncl01.lock +++ b/development/assets/www/lock/listings/efficacy/oncl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/exposure/exl01.lock b/development/assets/www/lock/listings/exposure/exl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/exposure/exl01.lock +++ b/development/assets/www/lock/listings/exposure/exl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/lab-results/lbl01.lock b/development/assets/www/lock/listings/lab-results/lbl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/lab-results/lbl01.lock +++ b/development/assets/www/lock/listings/lab-results/lbl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/lab-results/lbl01_rls.lock b/development/assets/www/lock/listings/lab-results/lbl01_rls.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/lab-results/lbl01_rls.lock +++ b/development/assets/www/lock/listings/lab-results/lbl01_rls.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/lab-results/lbl02a.lock b/development/assets/www/lock/listings/lab-results/lbl02a.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/lab-results/lbl02a.lock +++ b/development/assets/www/lock/listings/lab-results/lbl02a.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/lab-results/lbl02a_rls.lock b/development/assets/www/lock/listings/lab-results/lbl02a_rls.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/lab-results/lbl02a_rls.lock +++ b/development/assets/www/lock/listings/lab-results/lbl02a_rls.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/lab-results/lbl02b.lock b/development/assets/www/lock/listings/lab-results/lbl02b.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/lab-results/lbl02b.lock +++ b/development/assets/www/lock/listings/lab-results/lbl02b.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/medical-history/mhl01.lock b/development/assets/www/lock/listings/medical-history/mhl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/medical-history/mhl01.lock +++ b/development/assets/www/lock/listings/medical-history/mhl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/pharmacokinetic/adal01.lock b/development/assets/www/lock/listings/pharmacokinetic/adal01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/pharmacokinetic/adal01.lock +++ b/development/assets/www/lock/listings/pharmacokinetic/adal01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/pharmacokinetic/pkcl01.lock b/development/assets/www/lock/listings/pharmacokinetic/pkcl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/pharmacokinetic/pkcl01.lock +++ b/development/assets/www/lock/listings/pharmacokinetic/pkcl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/pharmacokinetic/pkcl02.lock b/development/assets/www/lock/listings/pharmacokinetic/pkcl02.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/pharmacokinetic/pkcl02.lock +++ b/development/assets/www/lock/listings/pharmacokinetic/pkcl02.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/pharmacokinetic/pkpl01.lock b/development/assets/www/lock/listings/pharmacokinetic/pkpl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/pharmacokinetic/pkpl01.lock +++ b/development/assets/www/lock/listings/pharmacokinetic/pkpl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/pharmacokinetic/pkpl02.lock b/development/assets/www/lock/listings/pharmacokinetic/pkpl02.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/pharmacokinetic/pkpl02.lock +++ b/development/assets/www/lock/listings/pharmacokinetic/pkpl02.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/pharmacokinetic/pkpl04.lock b/development/assets/www/lock/listings/pharmacokinetic/pkpl04.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/pharmacokinetic/pkpl04.lock +++ b/development/assets/www/lock/listings/pharmacokinetic/pkpl04.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/listings/vital-signs/vsl01.lock b/development/assets/www/lock/listings/vital-signs/vsl01.lock index 997f66c51..8201ebfda 100644 --- a/development/assets/www/lock/listings/vital-signs/vsl01.lock +++ b/development/assets/www/lock/listings/vital-signs/vsl01.lock @@ -190,7 +190,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -202,7 +202,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", diff --git a/development/assets/www/lock/tables/ADA/adat01.lock b/development/assets/www/lock/tables/ADA/adat01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/ADA/adat01.lock +++ b/development/assets/www/lock/tables/ADA/adat01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/ADA/adat02.lock b/development/assets/www/lock/tables/ADA/adat02.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/ADA/adat02.lock +++ b/development/assets/www/lock/tables/ADA/adat02.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/ADA/adat03.lock b/development/assets/www/lock/tables/ADA/adat03.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/ADA/adat03.lock +++ b/development/assets/www/lock/tables/ADA/adat03.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/ADA/adat04a.lock b/development/assets/www/lock/tables/ADA/adat04a.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/ADA/adat04a.lock +++ b/development/assets/www/lock/tables/ADA/adat04a.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/ADA/adat04b.lock b/development/assets/www/lock/tables/ADA/adat04b.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/ADA/adat04b.lock +++ b/development/assets/www/lock/tables/ADA/adat04b.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/ECG/egt01.lock b/development/assets/www/lock/tables/ECG/egt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/ECG/egt01.lock +++ b/development/assets/www/lock/tables/ECG/egt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/ECG/egt02.lock b/development/assets/www/lock/tables/ECG/egt02.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/ECG/egt02.lock +++ b/development/assets/www/lock/tables/ECG/egt02.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/ECG/egt03.lock b/development/assets/www/lock/tables/ECG/egt03.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/ECG/egt03.lock +++ b/development/assets/www/lock/tables/ECG/egt03.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/ECG/egt04.lock b/development/assets/www/lock/tables/ECG/egt04.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/ECG/egt04.lock +++ b/development/assets/www/lock/tables/ECG/egt04.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/ECG/egt05_qtcat.lock b/development/assets/www/lock/tables/ECG/egt05_qtcat.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/ECG/egt05_qtcat.lock +++ b/development/assets/www/lock/tables/ECG/egt05_qtcat.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet01.lock b/development/assets/www/lock/tables/adverse-events/aet01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet01.lock +++ b/development/assets/www/lock/tables/adverse-events/aet01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet01_aesi.lock b/development/assets/www/lock/tables/adverse-events/aet01_aesi.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet01_aesi.lock +++ b/development/assets/www/lock/tables/adverse-events/aet01_aesi.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet02.lock b/development/assets/www/lock/tables/adverse-events/aet02.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet02.lock +++ b/development/assets/www/lock/tables/adverse-events/aet02.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet02_smq.lock b/development/assets/www/lock/tables/adverse-events/aet02_smq.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet02_smq.lock +++ b/development/assets/www/lock/tables/adverse-events/aet02_smq.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet03.lock b/development/assets/www/lock/tables/adverse-events/aet03.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet03.lock +++ b/development/assets/www/lock/tables/adverse-events/aet03.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet04.lock b/development/assets/www/lock/tables/adverse-events/aet04.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet04.lock +++ b/development/assets/www/lock/tables/adverse-events/aet04.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet04_pi.lock b/development/assets/www/lock/tables/adverse-events/aet04_pi.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet04_pi.lock +++ b/development/assets/www/lock/tables/adverse-events/aet04_pi.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet05.lock b/development/assets/www/lock/tables/adverse-events/aet05.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet05.lock +++ b/development/assets/www/lock/tables/adverse-events/aet05.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet05_all.lock b/development/assets/www/lock/tables/adverse-events/aet05_all.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet05_all.lock +++ b/development/assets/www/lock/tables/adverse-events/aet05_all.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet06.lock b/development/assets/www/lock/tables/adverse-events/aet06.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet06.lock +++ b/development/assets/www/lock/tables/adverse-events/aet06.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet06_smq.lock b/development/assets/www/lock/tables/adverse-events/aet06_smq.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet06_smq.lock +++ b/development/assets/www/lock/tables/adverse-events/aet06_smq.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet07.lock b/development/assets/www/lock/tables/adverse-events/aet07.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet07.lock +++ b/development/assets/www/lock/tables/adverse-events/aet07.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet09.lock b/development/assets/www/lock/tables/adverse-events/aet09.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet09.lock +++ b/development/assets/www/lock/tables/adverse-events/aet09.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet09_smq.lock b/development/assets/www/lock/tables/adverse-events/aet09_smq.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet09_smq.lock +++ b/development/assets/www/lock/tables/adverse-events/aet09_smq.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/adverse-events/aet10.lock b/development/assets/www/lock/tables/adverse-events/aet10.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/adverse-events/aet10.lock +++ b/development/assets/www/lock/tables/adverse-events/aet10.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/concomitant-medications/cmt01.lock b/development/assets/www/lock/tables/concomitant-medications/cmt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/concomitant-medications/cmt01.lock +++ b/development/assets/www/lock/tables/concomitant-medications/cmt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/concomitant-medications/cmt01a.lock b/development/assets/www/lock/tables/concomitant-medications/cmt01a.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/concomitant-medications/cmt01a.lock +++ b/development/assets/www/lock/tables/concomitant-medications/cmt01a.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/concomitant-medications/cmt01b.lock b/development/assets/www/lock/tables/concomitant-medications/cmt01b.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/concomitant-medications/cmt01b.lock +++ b/development/assets/www/lock/tables/concomitant-medications/cmt01b.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/concomitant-medications/cmt02_pt.lock b/development/assets/www/lock/tables/concomitant-medications/cmt02_pt.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/concomitant-medications/cmt02_pt.lock +++ b/development/assets/www/lock/tables/concomitant-medications/cmt02_pt.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/deaths/dtht01.lock b/development/assets/www/lock/tables/deaths/dtht01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/deaths/dtht01.lock +++ b/development/assets/www/lock/tables/deaths/dtht01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/demography/dmt01.lock b/development/assets/www/lock/tables/demography/dmt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/demography/dmt01.lock +++ b/development/assets/www/lock/tables/demography/dmt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/disclosures/disclosurest01.lock b/development/assets/www/lock/tables/disclosures/disclosurest01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/disclosures/disclosurest01.lock +++ b/development/assets/www/lock/tables/disclosures/disclosurest01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/disclosures/eudrat01.lock b/development/assets/www/lock/tables/disclosures/eudrat01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/disclosures/eudrat01.lock +++ b/development/assets/www/lock/tables/disclosures/eudrat01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/disclosures/eudrat02.lock b/development/assets/www/lock/tables/disclosures/eudrat02.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/disclosures/eudrat02.lock +++ b/development/assets/www/lock/tables/disclosures/eudrat02.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/disposition/dst01.lock b/development/assets/www/lock/tables/disposition/dst01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/disposition/dst01.lock +++ b/development/assets/www/lock/tables/disposition/dst01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/disposition/pdt01.lock b/development/assets/www/lock/tables/disposition/pdt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/disposition/pdt01.lock +++ b/development/assets/www/lock/tables/disposition/pdt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/disposition/pdt02.lock b/development/assets/www/lock/tables/disposition/pdt02.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/disposition/pdt02.lock +++ b/development/assets/www/lock/tables/disposition/pdt02.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/efficacy/aovt01.lock b/development/assets/www/lock/tables/efficacy/aovt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/aovt01.lock +++ b/development/assets/www/lock/tables/efficacy/aovt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/aovt02.lock b/development/assets/www/lock/tables/efficacy/aovt02.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/aovt02.lock +++ b/development/assets/www/lock/tables/efficacy/aovt02.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/aovt03.lock b/development/assets/www/lock/tables/efficacy/aovt03.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/efficacy/aovt03.lock +++ b/development/assets/www/lock/tables/efficacy/aovt03.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/efficacy/cfbt01.lock b/development/assets/www/lock/tables/efficacy/cfbt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/cfbt01.lock +++ b/development/assets/www/lock/tables/efficacy/cfbt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/cmht01.lock b/development/assets/www/lock/tables/efficacy/cmht01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/cmht01.lock +++ b/development/assets/www/lock/tables/efficacy/cmht01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/coxt01.lock b/development/assets/www/lock/tables/efficacy/coxt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/coxt01.lock +++ b/development/assets/www/lock/tables/efficacy/coxt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": 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a/development/assets/www/lock/tables/efficacy/coxt02.lock b/development/assets/www/lock/tables/efficacy/coxt02.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/coxt02.lock +++ b/development/assets/www/lock/tables/efficacy/coxt02.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": 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a/development/assets/www/lock/tables/efficacy/dort01.lock +++ b/development/assets/www/lock/tables/efficacy/dort01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ 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"Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/lgrt02.lock b/development/assets/www/lock/tables/efficacy/lgrt02.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/lgrt02.lock +++ b/development/assets/www/lock/tables/efficacy/lgrt02.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/mmrmt01.lock b/development/assets/www/lock/tables/efficacy/mmrmt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/mmrmt01.lock +++ b/development/assets/www/lock/tables/efficacy/mmrmt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/onct05.lock b/development/assets/www/lock/tables/efficacy/onct05.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/onct05.lock +++ b/development/assets/www/lock/tables/efficacy/onct05.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/ratet01.lock b/development/assets/www/lock/tables/efficacy/ratet01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/efficacy/ratet01.lock +++ b/development/assets/www/lock/tables/efficacy/ratet01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/efficacy/rbmit01.lock b/development/assets/www/lock/tables/efficacy/rbmit01.lock index f42f6f5c1..e1b9b74b7 100644 --- a/development/assets/www/lock/tables/efficacy/rbmit01.lock +++ b/development/assets/www/lock/tables/efficacy/rbmit01.lock @@ -592,7 +592,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -604,7 +604,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1266,7 +1266,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1280,7 +1280,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/efficacy/rspt01.lock b/development/assets/www/lock/tables/efficacy/rspt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/rspt01.lock +++ b/development/assets/www/lock/tables/efficacy/rspt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/efficacy/ttet01.lock b/development/assets/www/lock/tables/efficacy/ttet01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/efficacy/ttet01.lock +++ b/development/assets/www/lock/tables/efficacy/ttet01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/exposure/ext01.lock b/development/assets/www/lock/tables/exposure/ext01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/exposure/ext01.lock +++ b/development/assets/www/lock/tables/exposure/ext01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt01.lock b/development/assets/www/lock/tables/lab-results/lbt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt01.lock +++ b/development/assets/www/lock/tables/lab-results/lbt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt02.lock b/development/assets/www/lock/tables/lab-results/lbt02.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt02.lock +++ b/development/assets/www/lock/tables/lab-results/lbt02.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt03.lock b/development/assets/www/lock/tables/lab-results/lbt03.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt03.lock +++ b/development/assets/www/lock/tables/lab-results/lbt03.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt04.lock b/development/assets/www/lock/tables/lab-results/lbt04.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt04.lock +++ b/development/assets/www/lock/tables/lab-results/lbt04.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt05.lock b/development/assets/www/lock/tables/lab-results/lbt05.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt05.lock +++ b/development/assets/www/lock/tables/lab-results/lbt05.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt06.lock b/development/assets/www/lock/tables/lab-results/lbt06.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt06.lock +++ b/development/assets/www/lock/tables/lab-results/lbt06.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt07.lock b/development/assets/www/lock/tables/lab-results/lbt07.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt07.lock +++ b/development/assets/www/lock/tables/lab-results/lbt07.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt08.lock b/development/assets/www/lock/tables/lab-results/lbt08.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt08.lock +++ b/development/assets/www/lock/tables/lab-results/lbt08.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt09.lock b/development/assets/www/lock/tables/lab-results/lbt09.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt09.lock +++ b/development/assets/www/lock/tables/lab-results/lbt09.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt10.lock b/development/assets/www/lock/tables/lab-results/lbt10.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt10.lock +++ b/development/assets/www/lock/tables/lab-results/lbt10.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt10_bl.lock b/development/assets/www/lock/tables/lab-results/lbt10_bl.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt10_bl.lock +++ b/development/assets/www/lock/tables/lab-results/lbt10_bl.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt11.lock b/development/assets/www/lock/tables/lab-results/lbt11.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt11.lock +++ b/development/assets/www/lock/tables/lab-results/lbt11.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt11_bl.lock b/development/assets/www/lock/tables/lab-results/lbt11_bl.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt11_bl.lock +++ b/development/assets/www/lock/tables/lab-results/lbt11_bl.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt12.lock b/development/assets/www/lock/tables/lab-results/lbt12.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt12.lock +++ b/development/assets/www/lock/tables/lab-results/lbt12.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt12_bl.lock b/development/assets/www/lock/tables/lab-results/lbt12_bl.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/lab-results/lbt12_bl.lock +++ b/development/assets/www/lock/tables/lab-results/lbt12_bl.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/lab-results/lbt13.lock b/development/assets/www/lock/tables/lab-results/lbt13.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt13.lock +++ b/development/assets/www/lock/tables/lab-results/lbt13.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt14.lock b/development/assets/www/lock/tables/lab-results/lbt14.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt14.lock +++ b/development/assets/www/lock/tables/lab-results/lbt14.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/lab-results/lbt15.lock b/development/assets/www/lock/tables/lab-results/lbt15.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/lab-results/lbt15.lock +++ b/development/assets/www/lock/tables/lab-results/lbt15.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/medical-history/mht01.lock b/development/assets/www/lock/tables/medical-history/mht01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/medical-history/mht01.lock +++ b/development/assets/www/lock/tables/medical-history/mht01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkct01.lock b/development/assets/www/lock/tables/pharmacokinetic/pkct01.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkct01.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkct01.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt02.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt02.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt02.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt02.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt03.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt03.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt03.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt03.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt04.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt04.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt04.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt04.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt05.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt05.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt05.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt05.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt06.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt06.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt06.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt06.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt07.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt07.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt07.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt07.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt08.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt08.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt08.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt08.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/pharmacokinetic/pkpt11.lock b/development/assets/www/lock/tables/pharmacokinetic/pkpt11.lock index 5644e6860..535be500b 100644 --- a/development/assets/www/lock/tables/pharmacokinetic/pkpt11.lock +++ b/development/assets/www/lock/tables/pharmacokinetic/pkpt11.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/risk-management-plan/rmpt01.lock b/development/assets/www/lock/tables/risk-management-plan/rmpt01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/risk-management-plan/rmpt01.lock +++ b/development/assets/www/lock/tables/risk-management-plan/rmpt01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/risk-management-plan/rmpt03.lock b/development/assets/www/lock/tables/risk-management-plan/rmpt03.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/risk-management-plan/rmpt03.lock +++ b/development/assets/www/lock/tables/risk-management-plan/rmpt03.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/risk-management-plan/rmpt04.lock b/development/assets/www/lock/tables/risk-management-plan/rmpt04.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/risk-management-plan/rmpt04.lock +++ b/development/assets/www/lock/tables/risk-management-plan/rmpt04.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/risk-management-plan/rmpt05.lock b/development/assets/www/lock/tables/risk-management-plan/rmpt05.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/risk-management-plan/rmpt05.lock +++ b/development/assets/www/lock/tables/risk-management-plan/rmpt05.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": 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100644 --- a/development/assets/www/lock/tables/risk-management-plan/rmpt06.lock +++ b/development/assets/www/lock/tables/risk-management-plan/rmpt06.lock @@ -503,7 +503,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -515,7 +515,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1089,7 +1089,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -1103,7 +1103,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "sass": { "Package": "sass", diff --git a/development/assets/www/lock/tables/safety/enrollment01.lock b/development/assets/www/lock/tables/safety/enrollment01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/safety/enrollment01.lock +++ b/development/assets/www/lock/tables/safety/enrollment01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/lock/tables/vital-signs/vst01.lock b/development/assets/www/lock/tables/vital-signs/vst01.lock index 84b2ccc57..2cacd452a 100644 --- a/development/assets/www/lock/tables/vital-signs/vst01.lock +++ b/development/assets/www/lock/tables/vital-signs/vst01.lock @@ -865,7 +865,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": 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"formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -877,7 +877,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1304,14 +1304,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1810,7 +1810,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1822,7 +1822,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "ps": { "Package": "ps", @@ -2027,7 +2027,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2041,7 +2041,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2310,7 +2310,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2334,11 +2334,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2351,7 +2351,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2389,7 +2389,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2426,7 +2426,7 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/assets/www/renv.lock b/development/assets/www/renv.lock index 2c1fa9f75..6ba024221 100644 --- a/development/assets/www/renv.lock +++ b/development/assets/www/renv.lock @@ -968,7 +968,7 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.9.9005", + "Version": "0.5.9.9006", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -980,7 +980,7 @@ "methods", "stringi" ], - "Hash": "d979133b67c4cd0cb0cdca031a2e1726" + "Hash": "a6bd45550968b5a777237788250594f1" }, "fs": { "Package": "fs", @@ -1439,14 +1439,14 @@ }, "later": { "Package": "later", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "dd8a8b6833989ba10fba1bf1ee7d3860" + "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { "Package": "lattice", @@ -1979,7 +1979,7 @@ }, "promises": { "Package": "promises", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1991,7 +1991,7 @@ "rlang", "stats" ], - "Hash": "08049fb8ae7205a0f8f83da772761e3a" + "Hash": "c84fd4f75ea1f5434735e08b7f50fbca" }, "proxy": { "Package": "proxy", @@ -2267,7 +2267,7 @@ }, "rtables": { "Package": "rtables", - "Version": "0.6.10.9007", + "Version": "0.6.10.9008", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2281,7 +2281,7 @@ "stats", "stringi" ], - "Hash": "43bf418b6d28a89302535789c27a4afc" + "Hash": "45245e9470cc3c0f0ca6e6cd7e5d9aca" }, "rtables.officer": { "Package": "rtables.officer", @@ -2566,7 +2566,7 @@ }, "teal": { "Package": "teal", - "Version": "0.15.2.9090", + "Version": "0.15.2.9091", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2590,11 +2590,11 @@ "tools", "utils" ], - "Hash": "923e194237b94f16a1dde17ed58d7f0e" + "Hash": "07dffd6f75d550ce94378ec82c5175fd" }, "teal.code": { "Package": "teal.code", - "Version": "0.5.0.9019", + "Version": "0.5.0.9020", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2607,7 +2607,7 @@ "stats", "utils" ], - "Hash": "fc9d97ba44b05bad25d7e17fa7cb4f06" + "Hash": "ca4065abcb61153d51b4c92e57d4edb8" }, "teal.data": { "Package": "teal.data", @@ -2645,7 +2645,7 @@ }, "teal.modules.clinical": { "Package": "teal.modules.clinical", - "Version": "0.9.1.9035", + "Version": "0.9.1.9036", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2682,11 +2682,11 @@ "utils", "vistime" ], - "Hash": "bc82d1096c2e9f00181096d8cde0f1b0" + "Hash": "811587c35c048f2aaca7e5013305c43d" }, "teal.modules.general": { "Package": "teal.modules.general", - "Version": "0.3.0.9054", + "Version": "0.3.0.9055", "Source": "Repository", "Repository": "https://pharmaverse.r-universe.dev", "Requirements": [ @@ -2698,6 +2698,7 @@ "ggmosaic", "ggplot2", "grid", + "lifecycle", "scales", "shiny", "shinyTree", @@ -2719,7 +2720,7 @@ "tools", "utils" ], - "Hash": "e46fadcbcaf3cca27d9ce0bfed25d716" + "Hash": "28fcd1b5ae19990c5ff080e7a716fd07" }, "teal.reporter": { "Package": "teal.reporter", diff --git a/development/graphs/efficacy/fstg01.html b/development/graphs/efficacy/fstg01.html index 672906231..f915d7c0d 100644 --- a/development/graphs/efficacy/fstg01.html +++ b/development/graphs/efficacy/fstg01.html @@ -1471,7 +1471,7 @@

Output

@@ -1540,7 +1540,7 @@ @@ -1620,7 +1620,7 @@ @@ -1682,7 +1682,7 @@ @@ -1747,7 +1747,7 @@ @@ -1821,7 +1821,7 @@ @@ -2045,7 +2045,7 @@

Timestamp

-
[1] "2024-11-27 17:39:26 UTC"
+
[1] "2024-11-30 17:35:22 UTC"

Session Info

@@ -2061,7 +2061,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2091,7 +2091,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2104,7 +2104,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2116,24 +2116,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2148,17 +2148,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) @@ -2191,9 +2191,9 @@
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z(^1dj<#XF6_pXNBQL0CJsgDgGCRX

Output

@@ -1553,7 +1553,7 @@
@@ -1640,7 +1640,7 @@ @@ -1716,7 +1716,7 @@ @@ -1795,7 +1795,7 @@ @@ -2049,7 +2049,7 @@

Timestamp

-
[1] "2024-11-27 17:40:28 UTC"
+
[1] "2024-11-30 17:36:26 UTC"

Session Info

@@ -2065,7 +2065,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2095,7 +2095,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats * 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2108,7 +2108,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2120,24 +2120,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2152,17 +2152,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) @@ -2195,9 +2195,9 @@
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Output

@@ -1533,7 +1533,7 @@
@@ -1589,7 +1589,7 @@ @@ -1642,7 +1642,7 @@ @@ -1697,7 +1697,7 @@ @@ -1753,7 +1753,7 @@ @@ -1814,7 +1814,7 @@ @@ -2019,7 +2019,7 @@

Timestamp

-
[1] "2024-11-27 17:40:01 UTC"
+
[1] "2024-11-30 17:35:59 UTC"

Session Info

@@ -2035,7 +2035,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2064,7 +2064,7 @@ fastmap 1.2.0 2024-05-15 [1] RSPM fontawesome 0.5.3 2024-11-16 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2077,7 +2077,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2089,24 +2089,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2121,17 +2121,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) @@ -2166,7 +2166,7 @@
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Timestamp

-
[1] "2024-11-27 17:39:01 UTC"
+
[1] "2024-11-30 17:34:58 UTC"

Session Info

@@ -1682,7 +1682,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1711,7 +1711,7 @@ fastmap 1.2.0 2024-05-15 [1] RSPM fontawesome 0.5.3 2024-11-16 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1724,7 +1724,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1733,28 +1733,28 @@ Matrix 1.7-1 2024-10-18 [1] RSPM memoise 2.0.1 2021-11-26 [1] RSPM mime 0.12 2021-09-28 [1] RSPM - mmrm 0.3.14.9001 2024-11-27 [1] https://p~ + mmrm 0.3.14.9001 2024-11-30 [1] https://p~ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) parallelly 1.39.0 2024-11-07 [1] RSPM pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1769,18 +1769,18 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ - tern.mmrm * 0.3.2.9002 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ + tern.mmrm * 0.3.2.9002 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM diff --git a/development/graphs/efficacy/mmrmg01_files/figure-html/teal-1.png b/development/graphs/efficacy/mmrmg01_files/figure-html/teal-1.png index 8259f6e6c4a617e1ddf99da12ba31e234655ab2e..a1c2ee64d133dcfaed518cb388d3b35f412076f4 100644 GIT binary patch delta 10258 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Timestamp

-
[1] "2024-11-27 17:41:05 UTC"
+
[1] "2024-11-30 17:37:03 UTC"

Session Info

@@ -1608,7 +1608,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1631,7 +1631,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1646,11 +1646,11 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1) Matrix 1.7-1 2024-10-18 [1] RSPM - mmrm 0.3.14.9001 2024-11-27 [1] https://p~ + mmrm 0.3.14.9001 2024-11-30 [1] https://p~ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) parallelly 1.39.0 2024-11-07 [1] RSPM pillar 1.9.0 2023-03-22 [1] RSPM @@ -1660,13 +1660,13 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) @@ -1675,8 +1675,8 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.mmrm * 0.3.2.9002 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.mmrm * 0.3.2.9002 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM diff --git a/development/graphs/other/brg01.html b/development/graphs/other/brg01.html index 065ec830a..42796865e 100644 --- a/development/graphs/other/brg01.html +++ b/development/graphs/other/brg01.html @@ -1465,7 +1465,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1599,7 +1599,7 @@ @@ -1661,7 +1661,7 @@ @@ -1719,7 +1719,7 @@ @@ -1804,7 +1804,7 @@ @@ -1870,7 +1870,7 @@ @@ -1935,7 +1935,7 @@ @@ -2039,7 +2039,7 @@ @@ -2109,7 +2109,7 @@ @@ -2150,7 +2150,7 @@

Timestamp

-
[1] "2024-11-27 17:41:59 UTC"
+
[1] "2024-11-30 17:37:56 UTC"

Session Info

@@ -2166,7 +2166,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2187,7 +2187,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -2202,7 +2202,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -2210,12 +2210,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -2223,7 +2223,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr * 1.3.1 2024-01-24 [1] RSPM @@ -2249,9 +2249,9 @@
diff --git a/development/graphs/other/bwg01.html b/development/graphs/other/bwg01.html index 87f4c4b69..ec4d05f55 100644 --- a/development/graphs/other/bwg01.html +++ b/development/graphs/other/bwg01.html @@ -1471,7 +1471,7 @@

Output

@@ -1542,7 +1542,7 @@ @@ -1605,7 +1605,7 @@ @@ -1669,7 +1669,7 @@ @@ -1744,7 +1744,7 @@ @@ -1804,7 +1804,7 @@ @@ -1881,7 +1881,7 @@ @@ -1952,7 +1952,7 @@ @@ -2060,7 +2060,7 @@ @@ -2121,7 +2121,7 @@ @@ -2464,7 +2464,7 @@

Timestamp

-
[1] "2024-11-27 17:42:43 UTC"
+
[1] "2024-11-30 17:38:40 UTC"

Session Info

@@ -2480,7 +2480,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2515,7 +2515,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggmosaic * 0.3.3 2021-02-23 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM @@ -2533,7 +2533,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -2546,19 +2546,19 @@ mime 0.12 2021-09-28 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM proxy 0.4-27 2022-06-09 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM @@ -2567,7 +2567,7 @@ rmarkdown 2.29 2024-11-04 [1] RSPM rootSolve 1.8.2.4 2023-09-21 [1] RSPM rstudioapi 0.17.1 2024-10-22 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) @@ -2581,16 +2581,16 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.general * 0.3.0.9054 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.general * 0.3.0.9055 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM @@ -2622,9 +2622,9 @@
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a/development/graphs/other/cig01.html b/development/graphs/other/cig01.html index 7fb5702b6..1df3c7db4 100644 --- a/development/graphs/other/cig01.html +++ b/development/graphs/other/cig01.html @@ -1471,7 +1471,7 @@

Output

@@ -1550,7 +1550,7 @@ @@ -1621,7 +1621,7 @@ @@ -1693,7 +1693,7 @@ @@ -1765,7 +1765,7 @@ @@ -1817,7 +1817,7 @@ @@ -2056,7 +2056,7 @@

Timestamp

-
[1] "2024-11-27 17:41:24 UTC"
+
[1] "2024-11-30 17:37:22 UTC"

Session Info

@@ -2072,7 +2072,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2100,7 +2100,7 @@ fastmap 1.2.0 2024-05-15 [1] RSPM fontawesome 0.5.3 2024-11-16 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM @@ -2113,7 +2113,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2125,24 +2125,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2157,17 +2157,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) @@ -2202,7 +2202,7 @@
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Output

@@ -1549,7 +1549,7 @@
@@ -1625,7 +1625,7 @@ @@ -1863,7 +1863,7 @@

Timestamp

-
[1] "2024-11-27 17:41:45 UTC"
+
[1] "2024-11-30 17:37:43 UTC"

Session Info

@@ -1879,7 +1879,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1908,7 +1908,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM @@ -1921,7 +1921,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1933,24 +1933,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1965,17 +1965,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) @@ -2008,9 +2008,9 @@
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Output

@@ -1532,7 +1532,7 @@ @@ -1586,7 +1586,7 @@ @@ -1639,7 +1639,7 @@ @@ -1681,7 +1681,7 @@

Basic Plot

@@ -1747,7 +1747,7 @@ @@ -1803,7 +1803,7 @@ @@ -1859,7 +1859,7 @@ @@ -1916,7 +1916,7 @@ @@ -1964,7 +1964,7 @@

Timestamp

-
[1] "2024-11-27 17:43:02 UTC"
+
[1] "2024-11-30 17:38:58 UTC"

Session Info

@@ -1980,7 +1980,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2002,7 +2002,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM @@ -2014,7 +2014,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2025,23 +2025,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) @@ -2051,15 +2051,15 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2088,9 +2088,9 @@
diff --git a/development/graphs/other/mng01.html b/development/graphs/other/mng01.html index 289c537a8..f0f5ef188 100644 --- a/development/graphs/other/mng01.html +++ b/development/graphs/other/mng01.html @@ -1471,7 +1471,7 @@

Output

@@ -1533,7 +1533,7 @@ @@ -1587,7 +1587,7 @@ @@ -1642,7 +1642,7 @@ @@ -1696,7 +1696,7 @@ @@ -1749,7 +1749,7 @@ @@ -1802,7 +1802,7 @@ @@ -1858,7 +1858,7 @@ @@ -2065,7 +2065,7 @@

Timestamp

-
[1] "2024-11-27 17:42:18 UTC"
+
[1] "2024-11-30 17:38:16 UTC"

Session Info

@@ -2081,7 +2081,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2111,7 +2111,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats * 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2124,7 +2124,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2136,24 +2136,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2168,17 +2168,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) @@ -2211,9 +2211,9 @@
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Output

@@ -1542,7 +1542,7 @@ @@ -1616,7 +1616,7 @@ @@ -1640,7 +1640,7 @@

Timestamp

-
[1] "2024-11-27 17:43:28 UTC"
+
[1] "2024-11-30 17:39:24 UTC"

Session Info

@@ -1656,7 +1656,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1675,7 +1675,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1690,7 +1690,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1698,12 +1698,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1711,7 +1711,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1739,7 +1739,7 @@
diff --git a/development/graphs/pharmacokinetic/pkcg02.html b/development/graphs/pharmacokinetic/pkcg02.html index 652fe1134..09830574e 100644 --- a/development/graphs/pharmacokinetic/pkcg02.html +++ b/development/graphs/pharmacokinetic/pkcg02.html @@ -1465,7 +1465,7 @@

Output

@@ -1542,7 +1542,7 @@ @@ -1617,7 +1617,7 @@ @@ -1641,7 +1641,7 @@

Timestamp

-
[1] "2024-11-27 17:44:03 UTC"
+
[1] "2024-11-30 17:39:59 UTC"

Session Info

@@ -1657,7 +1657,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1676,7 +1676,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1691,7 +1691,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1699,12 +1699,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1712,7 +1712,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1738,7 +1738,7 @@
diff --git a/development/graphs/pharmacokinetic/pkcg03.html b/development/graphs/pharmacokinetic/pkcg03.html index ff223fd88..080c72f5b 100644 --- a/development/graphs/pharmacokinetic/pkcg03.html +++ b/development/graphs/pharmacokinetic/pkcg03.html @@ -1465,7 +1465,7 @@

Output

@@ -1543,7 +1543,7 @@ @@ -1625,7 +1625,7 @@ @@ -1657,7 +1657,7 @@

Timestamp

-
[1] "2024-11-27 17:43:49 UTC"
+
[1] "2024-11-30 17:39:45 UTC"

Session Info

@@ -1673,7 +1673,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1693,7 +1693,7 @@ farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1708,7 +1708,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1716,12 +1716,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1729,7 +1729,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1755,9 +1755,9 @@
diff --git a/development/graphs/pharmacokinetic/pkpg01.html b/development/graphs/pharmacokinetic/pkpg01.html index 3b04a79c6..f8115cd7c 100644 --- a/development/graphs/pharmacokinetic/pkpg01.html +++ b/development/graphs/pharmacokinetic/pkpg01.html @@ -1465,7 +1465,7 @@

Output

@@ -1551,7 +1551,7 @@ @@ -1650,7 +1650,7 @@ @@ -1694,7 +1694,7 @@

Timestamp

-
[1] "2024-11-27 17:43:56 UTC"
+
[1] "2024-11-30 17:39:52 UTC"

Session Info

@@ -1710,7 +1710,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1730,7 +1730,7 @@ farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1745,7 +1745,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1753,12 +1753,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1766,7 +1766,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1792,9 +1792,9 @@
diff --git a/development/graphs/pharmacokinetic/pkpg02.html b/development/graphs/pharmacokinetic/pkpg02.html index a665ef2b2..72c2646ff 100644 --- a/development/graphs/pharmacokinetic/pkpg02.html +++ b/development/graphs/pharmacokinetic/pkpg02.html @@ -1465,7 +1465,7 @@

Output

@@ -1572,7 +1572,7 @@ @@ -1653,7 +1653,7 @@ @@ -1704,7 +1704,7 @@

Timestamp

-
[1] "2024-11-27 17:43:42 UTC"
+
[1] "2024-11-30 17:39:38 UTC"

Session Info

@@ -1720,7 +1720,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1739,7 +1739,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1754,7 +1754,7 @@ Matrix 1.7-1 2024-10-18 [1] RSPM mgcv 1.9-1 2023-12-21 [2] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM @@ -1763,12 +1763,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1776,7 +1776,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1802,9 +1802,9 @@
diff --git a/development/graphs/pharmacokinetic/pkpg03.html b/development/graphs/pharmacokinetic/pkpg03.html index e2b75d0df..12e0afe68 100644 --- a/development/graphs/pharmacokinetic/pkpg03.html +++ b/development/graphs/pharmacokinetic/pkpg03.html @@ -1465,7 +1465,7 @@

Output

@@ -1547,7 +1547,7 @@ @@ -1571,7 +1571,7 @@

Timestamp

-
[1] "2024-11-27 17:43:35 UTC"
+
[1] "2024-11-30 17:39:31 UTC"

Session Info

@@ -1587,7 +1587,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1606,7 +1606,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1621,7 +1621,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1629,12 +1629,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1642,7 +1642,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1668,9 +1668,9 @@
diff --git a/development/graphs/pharmacokinetic/pkpg04.html b/development/graphs/pharmacokinetic/pkpg04.html index aaf824235..e34433d81 100644 --- a/development/graphs/pharmacokinetic/pkpg04.html +++ b/development/graphs/pharmacokinetic/pkpg04.html @@ -1465,7 +1465,7 @@

Output

@@ -1548,7 +1548,7 @@ @@ -1573,7 +1573,7 @@

Timestamp

-
[1] "2024-11-27 17:43:11 UTC"
+
[1] "2024-11-30 17:39:07 UTC"

Session Info

@@ -1589,7 +1589,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1608,7 +1608,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM ggrepel * 0.9.6 2024-09-07 [1] RSPM @@ -1624,7 +1624,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1632,13 +1632,13 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1646,7 +1646,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1672,9 +1672,9 @@
diff --git a/development/graphs/pharmacokinetic/pkpg04_files/figure-html/plot1-1.svg b/development/graphs/pharmacokinetic/pkpg04_files/figure-html/plot1-1.svg index ec264ece0..24c82bc6c 100644 --- a/development/graphs/pharmacokinetic/pkpg04_files/figure-html/plot1-1.svg +++ b/development/graphs/pharmacokinetic/pkpg04_files/figure-html/plot1-1.svg @@ -114,28 +114,28 @@ - - - - + + + + id-53 id-360 -id-10 -id-104 -id-78 -id-224 -id-324 -id-104 -id-140 -id-187 -id-195 -id-99 -id-378 -id-215 -id-245 -id-64 -id-363 -id-181 +id-10 +id-104 +id-78 +id-224 +id-324 +id-104 +id-140 +id-187 +id-195 +id-99 +id-378 +id-215 +id-245 +id-64 +id-363 +id-181 diff --git a/development/graphs/pharmacokinetic/pkpg06.html b/development/graphs/pharmacokinetic/pkpg06.html index 743af92bc..cc32869a9 100644 --- a/development/graphs/pharmacokinetic/pkpg06.html +++ b/development/graphs/pharmacokinetic/pkpg06.html @@ -1464,7 +1464,7 @@

Output

@@ -1553,7 +1553,7 @@ @@ -1635,7 +1635,7 @@ @@ -1705,7 +1705,7 @@ @@ -1807,7 +1807,7 @@ @@ -1869,7 +1869,7 @@

Timestamp

-
[1] "2024-11-27 17:43:18 UTC"
+
[1] "2024-11-30 17:39:15 UTC"

Session Info

@@ -1885,7 +1885,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1904,7 +1904,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM farver 2.1.2 2024-05-13 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 * 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1919,7 +1919,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor * 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor * 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1927,12 +1927,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1940,7 +1940,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr * 1.3.1 2024-01-24 [1] RSPM @@ -1966,9 +1966,9 @@
diff --git a/development/listings/ADA/adal02.html b/development/listings/ADA/adal02.html index 1f921f3cf..c2101e9f1 100644 --- a/development/listings/ADA/adal02.html +++ b/development/listings/ADA/adal02.html @@ -1465,7 +1465,7 @@

Output

@@ -1573,7 +1573,7 @@ @@ -1674,7 +1674,7 @@

Timestamp

-
[1] "2024-11-27 18:14:14 UTC"
+
[1] "2024-11-30 18:10:07 UTC"

Session Info

@@ -1690,7 +1690,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1706,7 +1706,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1722,9 +1722,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1756,9 +1756,9 @@
diff --git a/development/listings/ECG/egl01.html b/development/listings/ECG/egl01.html index 2c66cc030..2ba6a579c 100644 --- a/development/listings/ECG/egl01.html +++ b/development/listings/ECG/egl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1631,7 +1631,7 @@

Timestamp

-
[1] "2024-11-27 18:14:19 UTC"
+
[1] "2024-11-30 18:10:12 UTC"

Session Info

@@ -1647,7 +1647,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1663,7 +1663,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1679,9 +1679,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1713,9 +1713,9 @@
diff --git a/development/listings/adverse-events/ael01.html b/development/listings/adverse-events/ael01.html index dc944af0e..d07c66ec8 100644 --- a/development/listings/adverse-events/ael01.html +++ b/development/listings/adverse-events/ael01.html @@ -1465,7 +1465,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1567,7 +1567,7 @@

Timestamp

-
[1] "2024-11-27 18:13:16 UTC"
+
[1] "2024-11-30 18:09:10 UTC"

Session Info

@@ -1583,7 +1583,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1599,7 +1599,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1614,9 +1614,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1647,9 +1647,9 @@
diff --git a/development/listings/adverse-events/ael01_nollt.html b/development/listings/adverse-events/ael01_nollt.html index 69a3e36bc..ff53668a2 100644 --- a/development/listings/adverse-events/ael01_nollt.html +++ b/development/listings/adverse-events/ael01_nollt.html @@ -1465,7 +1465,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1566,7 +1566,7 @@

Timestamp

-
[1] "2024-11-27 18:13:12 UTC"
+
[1] "2024-11-30 18:09:06 UTC"

Session Info

@@ -1582,7 +1582,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1598,7 +1598,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1613,9 +1613,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1646,9 +1646,9 @@
diff --git a/development/listings/adverse-events/ael02.html b/development/listings/adverse-events/ael02.html index 506bda756..fa093c681 100644 --- a/development/listings/adverse-events/ael02.html +++ b/development/listings/adverse-events/ael02.html @@ -1465,7 +1465,7 @@

Output

@@ -1564,7 +1564,7 @@ @@ -1631,7 +1631,7 @@

Timestamp

-
[1] "2024-11-27 18:13:21 UTC"
+
[1] "2024-11-30 18:09:15 UTC"

Session Info

@@ -1647,7 +1647,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1663,7 +1663,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1678,9 +1678,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1713,7 +1713,7 @@
diff --git a/development/listings/adverse-events/ael02_ed.html b/development/listings/adverse-events/ael02_ed.html index 88273fe7d..29f374910 100644 --- a/development/listings/adverse-events/ael02_ed.html +++ b/development/listings/adverse-events/ael02_ed.html @@ -1465,7 +1465,7 @@

Output

@@ -1564,7 +1564,7 @@ @@ -1649,7 +1649,7 @@

Timestamp

-
[1] "2024-11-27 18:13:07 UTC"
+
[1] "2024-11-30 18:09:01 UTC"

Session Info

@@ -1665,7 +1665,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1681,7 +1681,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1697,9 +1697,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1731,7 +1731,7 @@
diff --git a/development/listings/adverse-events/ael03.html b/development/listings/adverse-events/ael03.html index 59c2ff089..b0c85dcce 100644 --- a/development/listings/adverse-events/ael03.html +++ b/development/listings/adverse-events/ael03.html @@ -1465,7 +1465,7 @@

Output

@@ -1574,7 +1574,7 @@ @@ -1650,7 +1650,7 @@

Timestamp

-
[1] "2024-11-27 18:13:26 UTC"
+
[1] "2024-11-30 18:09:20 UTC"

Session Info

@@ -1666,7 +1666,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1682,7 +1682,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1697,9 +1697,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1730,9 +1730,9 @@
diff --git a/development/listings/adverse-events/ael04.html b/development/listings/adverse-events/ael04.html index df2de61c5..f15953c09 100644 --- a/development/listings/adverse-events/ael04.html +++ b/development/listings/adverse-events/ael04.html @@ -1465,7 +1465,7 @@

Output

@@ -1545,7 +1545,7 @@ @@ -1588,7 +1588,7 @@

Timestamp

-
[1] "2024-11-27 18:13:02 UTC"
+
[1] "2024-11-30 18:08:56 UTC"

Session Info

@@ -1604,7 +1604,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1620,7 +1620,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1635,9 +1635,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1668,9 +1668,9 @@
diff --git a/development/listings/concomitant-medications/cml01.html b/development/listings/concomitant-medications/cml01.html index 470fe49e8..948515395 100644 --- a/development/listings/concomitant-medications/cml01.html +++ b/development/listings/concomitant-medications/cml01.html @@ -1465,7 +1465,7 @@

Output

@@ -1545,7 +1545,7 @@ @@ -1599,7 +1599,7 @@

Timestamp

-
[1] "2024-11-27 18:12:57 UTC"
+
[1] "2024-11-30 18:08:52 UTC"

Session Info

@@ -1615,7 +1615,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1631,7 +1631,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1646,9 +1646,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1679,9 +1679,9 @@
diff --git a/development/listings/concomitant-medications/cml02a_gl.html b/development/listings/concomitant-medications/cml02a_gl.html index 3b5480b52..075bc32b4 100644 --- a/development/listings/concomitant-medications/cml02a_gl.html +++ b/development/listings/concomitant-medications/cml02a_gl.html @@ -1465,7 +1465,7 @@

Output

@@ -1541,7 +1541,7 @@ @@ -1573,7 +1573,7 @@

Timestamp

-
[1] "2024-11-27 18:12:48 UTC"
+
[1] "2024-11-30 18:08:43 UTC"

Session Info

@@ -1589,7 +1589,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1605,7 +1605,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1620,9 +1620,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1653,9 +1653,9 @@
diff --git a/development/listings/concomitant-medications/cml02b_gl.html b/development/listings/concomitant-medications/cml02b_gl.html index fdc31ffbb..187e4c906 100644 --- a/development/listings/concomitant-medications/cml02b_gl.html +++ b/development/listings/concomitant-medications/cml02b_gl.html @@ -1465,7 +1465,7 @@

Output

@@ -1541,7 +1541,7 @@ @@ -1576,7 +1576,7 @@

Timestamp

-
[1] "2024-11-27 18:12:52 UTC"
+
[1] "2024-11-30 18:08:47 UTC"

Session Info

@@ -1592,7 +1592,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1608,7 +1608,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1623,9 +1623,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1656,9 +1656,9 @@
diff --git a/development/listings/development-safety-update-report/dsur4.html b/development/listings/development-safety-update-report/dsur4.html index fef64f93e..2e0059d7f 100644 --- a/development/listings/development-safety-update-report/dsur4.html +++ b/development/listings/development-safety-update-report/dsur4.html @@ -1465,7 +1465,7 @@

Output

@@ -1545,7 +1545,7 @@ @@ -1578,7 +1578,7 @@

Timestamp

-
[1] "2024-11-27 18:12:43 UTC"
+
[1] "2024-11-30 18:08:38 UTC"

Session Info

@@ -1594,7 +1594,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1610,7 +1610,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1625,9 +1625,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1658,7 +1658,7 @@
diff --git a/development/listings/disposition/dsl01.html b/development/listings/disposition/dsl01.html index 037355742..0b10f2854 100644 --- a/development/listings/disposition/dsl01.html +++ b/development/listings/disposition/dsl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1545,7 +1545,7 @@ @@ -1587,7 +1587,7 @@

Timestamp

-
[1] "2024-11-27 18:13:35 UTC"
+
[1] "2024-11-30 18:09:29 UTC"

Session Info

@@ -1603,7 +1603,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1619,7 +1619,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1634,9 +1634,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1667,9 +1667,9 @@
diff --git a/development/listings/disposition/dsl02.html b/development/listings/disposition/dsl02.html index 2a7ccd6a6..b64066b70 100644 --- a/development/listings/disposition/dsl02.html +++ b/development/listings/disposition/dsl02.html @@ -1465,7 +1465,7 @@

Output

@@ -1582,7 +1582,7 @@

Timestamp

-
[1] "2024-11-27 18:13:40 UTC"
+
[1] "2024-11-30 18:09:33 UTC"

Session Info

@@ -1598,7 +1598,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1614,7 +1614,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1629,9 +1629,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1662,9 +1662,9 @@
diff --git a/development/listings/efficacy/oncl01.html b/development/listings/efficacy/oncl01.html index 6903da930..037f9187b 100644 --- a/development/listings/efficacy/oncl01.html +++ b/development/listings/efficacy/oncl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1642,7 +1642,7 @@

Timestamp

-
[1] "2024-11-27 18:12:04 UTC"
+
[1] "2024-11-30 18:07:59 UTC"

Session Info

@@ -1658,7 +1658,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1674,7 +1674,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1690,9 +1690,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1724,9 +1724,9 @@
diff --git a/development/listings/exposure/exl01.html b/development/listings/exposure/exl01.html index 09131e1cc..e7f4106bc 100644 --- a/development/listings/exposure/exl01.html +++ b/development/listings/exposure/exl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1544,7 +1544,7 @@ @@ -1586,7 +1586,7 @@

Timestamp

-
[1] "2024-11-27 18:13:30 UTC"
+
[1] "2024-11-30 18:09:24 UTC"

Session Info

@@ -1602,7 +1602,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1618,7 +1618,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1633,9 +1633,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1666,9 +1666,9 @@
diff --git a/development/listings/lab-results/lbl01.html b/development/listings/lab-results/lbl01.html index 76c17d3a6..c6d4a0171 100644 --- a/development/listings/lab-results/lbl01.html +++ b/development/listings/lab-results/lbl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1615,7 +1615,7 @@

Timestamp

-
[1] "2024-11-27 18:12:19 UTC"
+
[1] "2024-11-30 18:08:14 UTC"

Session Info

@@ -1631,7 +1631,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1647,7 +1647,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1663,9 +1663,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1699,7 +1699,7 @@
diff --git a/development/listings/lab-results/lbl01_rls.html b/development/listings/lab-results/lbl01_rls.html index f9cfb1f7b..ff5533625 100644 --- a/development/listings/lab-results/lbl01_rls.html +++ b/development/listings/lab-results/lbl01_rls.html @@ -1465,7 +1465,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1620,7 +1620,7 @@

Timestamp

-
[1] "2024-11-27 18:12:24 UTC"
+
[1] "2024-11-30 18:08:19 UTC"

Session Info

@@ -1636,7 +1636,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1652,7 +1652,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1668,9 +1668,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1702,9 +1702,9 @@
diff --git a/development/listings/lab-results/lbl02a.html b/development/listings/lab-results/lbl02a.html index b94f0ea23..80508986e 100644 --- a/development/listings/lab-results/lbl02a.html +++ b/development/listings/lab-results/lbl02a.html @@ -1465,7 +1465,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1615,7 +1615,7 @@

Timestamp

-
[1] "2024-11-27 18:12:34 UTC"
+
[1] "2024-11-30 18:08:29 UTC"

Session Info

@@ -1631,7 +1631,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1647,7 +1647,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1662,9 +1662,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1695,9 +1695,9 @@
diff --git a/development/listings/lab-results/lbl02a_rls.html b/development/listings/lab-results/lbl02a_rls.html index 034344032..ae1d78a99 100644 --- a/development/listings/lab-results/lbl02a_rls.html +++ b/development/listings/lab-results/lbl02a_rls.html @@ -1465,7 +1465,7 @@

Output

@@ -1550,7 +1550,7 @@ @@ -1636,7 +1636,7 @@

Timestamp

-
[1] "2024-11-27 18:12:29 UTC"
+
[1] "2024-11-30 18:08:24 UTC"

Session Info

@@ -1652,7 +1652,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1668,7 +1668,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1683,9 +1683,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1716,9 +1716,9 @@
diff --git a/development/listings/lab-results/lbl02b.html b/development/listings/lab-results/lbl02b.html index 8772deee9..35b06b31d 100644 --- a/development/listings/lab-results/lbl02b.html +++ b/development/listings/lab-results/lbl02b.html @@ -1465,7 +1465,7 @@

Output

@@ -1549,7 +1549,7 @@ @@ -1616,7 +1616,7 @@

Timestamp

-
[1] "2024-11-27 18:12:14 UTC"
+
[1] "2024-11-30 18:08:09 UTC"

Session Info

@@ -1632,7 +1632,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1648,7 +1648,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1663,9 +1663,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1696,9 +1696,9 @@
diff --git a/development/listings/medical-history/mhl01.html b/development/listings/medical-history/mhl01.html index 4db2e7174..60457305f 100644 --- a/development/listings/medical-history/mhl01.html +++ b/development/listings/medical-history/mhl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1545,7 +1545,7 @@ @@ -1591,7 +1591,7 @@

Timestamp

-
[1] "2024-11-27 18:12:39 UTC"
+
[1] "2024-11-30 18:08:34 UTC"

Session Info

@@ -1607,7 +1607,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1623,7 +1623,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1638,9 +1638,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1671,9 +1671,9 @@
diff --git a/development/listings/pharmacokinetic/adal01.html b/development/listings/pharmacokinetic/adal01.html index 55108f0af..29957570c 100644 --- a/development/listings/pharmacokinetic/adal01.html +++ b/development/listings/pharmacokinetic/adal01.html @@ -1465,7 +1465,7 @@

Output

@@ -1571,7 +1571,7 @@ @@ -1687,7 +1687,7 @@

Timestamp

-
[1] "2024-11-27 18:13:55 UTC"
+
[1] "2024-11-30 18:09:48 UTC"

Session Info

@@ -1703,7 +1703,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1719,7 +1719,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1735,9 +1735,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data * 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data * 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1769,9 +1769,9 @@
diff --git a/development/listings/pharmacokinetic/pkcl01.html b/development/listings/pharmacokinetic/pkcl01.html index 45a686a95..634e62055 100644 --- a/development/listings/pharmacokinetic/pkcl01.html +++ b/development/listings/pharmacokinetic/pkcl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1552,7 +1552,7 @@ @@ -1589,7 +1589,7 @@

Timestamp

-
[1] "2024-11-27 18:14:04 UTC"
+
[1] "2024-11-30 18:09:58 UTC"

Session Info

@@ -1605,7 +1605,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1621,7 +1621,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1636,9 +1636,9 @@ processx 3.8.4 2024-03-16 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1669,9 +1669,9 @@
diff --git a/development/listings/pharmacokinetic/pkcl02.html b/development/listings/pharmacokinetic/pkcl02.html index 4d6c24f21..206b7777e 100644 --- a/development/listings/pharmacokinetic/pkcl02.html +++ b/development/listings/pharmacokinetic/pkcl02.html @@ -1465,7 +1465,7 @@

Output

@@ -1552,7 +1552,7 @@ @@ -1623,7 +1623,7 @@

Timestamp

-
[1] "2024-11-27 18:13:45 UTC"
+
[1] "2024-11-30 18:09:38 UTC"

Session Info

@@ -1639,7 +1639,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1655,7 +1655,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1671,9 +1671,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1705,9 +1705,9 @@
diff --git a/development/listings/pharmacokinetic/pkpl01.html b/development/listings/pharmacokinetic/pkpl01.html index 7c83b7332..bf9486982 100644 --- a/development/listings/pharmacokinetic/pkpl01.html +++ b/development/listings/pharmacokinetic/pkpl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1546,7 +1546,7 @@ @@ -1591,7 +1591,7 @@

Timestamp

-
[1] "2024-11-27 18:13:50 UTC"
+
[1] "2024-11-30 18:09:43 UTC"

Session Info

@@ -1607,7 +1607,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1623,7 +1623,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1639,9 +1639,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1673,9 +1673,9 @@
diff --git a/development/listings/pharmacokinetic/pkpl02.html b/development/listings/pharmacokinetic/pkpl02.html index bdbde6802..15dec3b51 100644 --- a/development/listings/pharmacokinetic/pkpl02.html +++ b/development/listings/pharmacokinetic/pkpl02.html @@ -1465,7 +1465,7 @@

Output

@@ -1546,7 +1546,7 @@ @@ -1592,7 +1592,7 @@

Timestamp

-
[1] "2024-11-27 18:14:00 UTC"
+
[1] "2024-11-30 18:09:53 UTC"

Session Info

@@ -1608,7 +1608,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1624,7 +1624,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1640,9 +1640,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1676,7 +1676,7 @@
diff --git a/development/listings/pharmacokinetic/pkpl04.html b/development/listings/pharmacokinetic/pkpl04.html index 92ec2f6f0..4d4f6088c 100644 --- a/development/listings/pharmacokinetic/pkpl04.html +++ b/development/listings/pharmacokinetic/pkpl04.html @@ -1465,7 +1465,7 @@

Output

@@ -1553,7 +1553,7 @@ @@ -1610,7 +1610,7 @@

Timestamp

-
[1] "2024-11-27 18:14:09 UTC"
+
[1] "2024-11-30 18:10:02 UTC"

Session Info

@@ -1626,7 +1626,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1642,7 +1642,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1658,9 +1658,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1694,7 +1694,7 @@
diff --git a/development/listings/vital-signs/vsl01.html b/development/listings/vital-signs/vsl01.html index a5a8e220d..c1624eb60 100644 --- a/development/listings/vital-signs/vsl01.html +++ b/development/listings/vital-signs/vsl01.html @@ -1465,7 +1465,7 @@

Output

@@ -1552,7 +1552,7 @@ @@ -1667,7 +1667,7 @@

Timestamp

-
[1] "2024-11-27 18:12:09 UTC"
+
[1] "2024-11-30 18:08:04 UTC"

Session Info

@@ -1683,7 +1683,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1699,7 +1699,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM htmltools 0.5.8.1 2024-04-04 [1] RSPM @@ -1715,9 +1715,9 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rlang 1.1.4 2024-06-04 [1] RSPM - rlistings * 0.2.9.9010 2024-11-27 [1] https://p~ + rlistings * 0.2.9.9010 2024-11-30 [1] https://p~ rmarkdown 2.29 2024-11-04 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1749,9 +1749,9 @@
diff --git a/development/repro.html b/development/repro.html index 7e18612af..16fb15e3e 100644 --- a/development/repro.html +++ b/development/repro.html @@ -198,7 +198,7 @@

Timestamp

-
[1] "2024-11-27 18:11:59 UTC"
+
[1] "2024-11-30 18:07:55 UTC"

Session Info

@@ -214,7 +214,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── diff --git a/development/search.json b/development/search.json index a755f0d2f..1e709fa2d 100644 --- a/development/search.json +++ b/development/search.json @@ -66,7 +66,7 @@ "href": "listings/ECG/egl01.html#reproducibility", "title": "EGL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:14:19 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:10:12 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "ECG", @@ -90,7 +90,7 @@ "href": "listings/pharmacokinetic/pkpl04.html#reproducibility", "title": "PKPL04", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:14:09 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:10:02 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Pharmacokinetic", @@ -114,7 +114,7 @@ "href": "listings/pharmacokinetic/pkpl02.html#reproducibility", "title": "PKPL02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:14:00 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:53 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Pharmacokinetic", @@ -138,7 +138,7 @@ "href": "listings/pharmacokinetic/pkpl01.html#reproducibility", "title": "PKPL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:50 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:43 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Pharmacokinetic", @@ -162,7 +162,7 @@ "href": "listings/disposition/dsl02.html#reproducibility", "title": "DSL02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:40 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:33 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Disposition", @@ -186,7 +186,7 @@ "href": "listings/exposure/exl01.html#reproducibility", "title": "EXL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:30 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:24 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Exposure", @@ -210,7 +210,7 @@ "href": "listings/adverse-events/ael02.html#reproducibility", "title": "AEL02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:21 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:15 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Adverse Events", @@ -234,7 +234,7 @@ "href": "listings/adverse-events/ael01_nollt.html#reproducibility", "title": "AEL01_NOLLT", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:12 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:06 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Adverse Events", @@ -258,7 +258,7 @@ "href": "listings/adverse-events/ael04.html#reproducibility", "title": "AEL04", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:02 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:56 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Adverse Events", @@ -282,7 +282,7 @@ "href": "listings/concomitant-medications/cml02b_gl.html#reproducibility", "title": "CML02B_GL", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:52 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:47 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Concomitant Medications", @@ -306,7 +306,7 @@ "href": "listings/development-safety-update-report/dsur4.html#reproducibility", "title": "DSUR4", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:43 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:38 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Development Safety Update Report", @@ -330,7 +330,7 @@ "href": "listings/lab-results/lbl02a.html#reproducibility", "title": "LBL02A", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:34 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:29 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Lab Results", @@ -354,7 +354,7 @@ "href": "listings/lab-results/lbl01_rls.html#reproducibility", "title": "LBL01_RLS", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:24 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:19 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Lab Results", @@ -378,7 +378,7 @@ "href": "listings/lab-results/lbl02b.html#reproducibility", "title": "LBL02B", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:14 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:09 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Lab Results", @@ -402,7 +402,7 @@ "href": "listings/efficacy/oncl01.html#reproducibility", "title": "ONCL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:04 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:07:59 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Efficacy", @@ -414,7 +414,7 @@ "href": "repro.html#reproducibility", "title": "", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:11:59 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload" + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:07:55 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload" }, { "objectID": "tables/ECG/egt04.html#output", @@ -433,7 +433,7 @@ "href": "tables/ECG/egt04.html#reproducibility", "title": "EGT04", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:11:53 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:07:49 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "ECG", @@ -469,7 +469,7 @@ "href": "tables/ECG/egt01.html#reproducibility", "title": "EGT01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:11:19 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 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on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:05:52 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "ADA", @@ -577,7 +577,7 @@ "href": "tables/pharmacokinetic/pkpt02.html#reproducibility", "title": "PKPT02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:09:41 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 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2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:05:39 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Pharmacokinetic", @@ -589,7 +589,7 @@ "href": "tables/pharmacokinetic/pkct01.html#output", "title": "PKCT01", "section": "Output", - "text": "Output\n\n\nStandard Table (Stats in Columns)\nTable Implementing 1/3 Imputation Rule\nTable Implementing 1/2 Imputation Rule\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- lyt_rows %>%\n analyze_vars_in_cols(\n vars = c(\"AVAL\", \"AVALCAT1\", rep(\"AVAL\", 8)),\n .stats = c(\"n\", \"n_blq\", \"mean\", \"sd\", \"cv\", \"geom_mean\", \"geom_cv\", \"median\", \"min\", \"max\"),\n .formats = c(\n n = \"xx.\", n_blq = \"xx.\", mean = format_sigfig(3), sd = format_sigfig(3), cv = \"xx.x\", median = format_sigfig(3),\n geom_mean = format_sigfig(3), geom_cv = \"xx.x\", min = format_sigfig(3), max = format_sigfig(3)\n ),\n .labels = c(\n n = \"n\", n_blq = \"Number\\nof\\nLTRs/BLQs\", mean = \"Mean\", sd = \"SD\", cv = \"CV (%) Mean\",\n geom_mean = \"Geometric Mean\", geom_cv = \"CV % Geometric Mean\", median = \"Median\", min = \"Minimum\", max = \"Maximum\"\n ),\n na_str = \"NE\",\n .aligns = \"decimal\"\n )\n\nresult <- build_table(lyt, df = adpc_1, alt_counts_df = adsl) %>% prune_table()\n\n# Decorating\nmain_title(result) <- \"Summary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\"\nsubtitles(result) <- c(\n \"Protocol: xxxxx\",\n paste(\"Analyte: \", unique(adpc_1$PARAM)),\n paste(\"Treatment:\", unique(adpc_1$ACTARM))\n)\nmain_footer(result) <- \"NE: Not Estimable\"\n\nresult\n\nSummary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\nProtocol: xxxxx\nAnalyte: Plasma Drug X\nTreatment: A: Drug X\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n Number \n Visit of \n Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nA: Drug X (N=134) \n Day 1 \n 0 / Predose 134 134 0 0 NE NE NE 0 0 0 \n 0.5 / 0.5H 134 0 12.6 1.51 12.0 12.5 12.2 12.6 9.72 15.6 \n 1 / 1H 134 0 16.2 1.63 10.0 16.1 10.1 16.2 12.6 19.9 \n 1.5 / 1.5H 134 0 15.6 1.46 9.3 15.6 9.3 15.5 12.3 19.0 \n 2 / 2H 134 0 13.4 1.35 10.1 13.4 10.0 13.3 10.8 16.5 \n 3 / 3H 134 0 8.47 1.25 14.7 8.38 15.0 8.40 5.88 10.9 \n 4 / 4H 134 0 4.79 1.02 21.2 4.69 22.0 4.79 2.70 7.09 \n 8 / 8H 134 0 0.348 0.180 51.7 0.303 58.4 0.318 0.0760 0.866 \n 12 / 12H 134 0 0.0224 0.0189 84.6 0.0156 111.6 0.0170 0.00200 0.0830\n Day 2 \n 24 / 24H 134 134 0 0 NE NE NE 0 0 0 \n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n\nNE: Not Estimable\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- lyt_rows %>%\n analyze_vars_in_cols(\n vars = c(\"AVAL\", \"AVALCAT1\", rep(\"AVAL\", 8)),\n .stats = c(\"n\", \"n_blq\", \"mean\", \"sd\", \"cv\", \"geom_mean\", \"geom_cv\", \"median\", \"min\", \"max\"),\n .formats = c(\n n = \"xx.\", n_blq = \"xx.\", mean = format_sigfig(3), sd = format_sigfig(3), cv = \"xx.x\", median = format_sigfig(3),\n geom_mean = format_sigfig(3), geom_cv = \"xx.x\", min = format_sigfig(3), max = format_sigfig(3)\n ),\n .labels = c(\n n = \"n\", n_blq = \"Number\\nof\\nLTRs/BLQs\", mean = \"Mean\", sd = \"SD\", cv = \"CV (%) Mean\",\n geom_mean = \"Geometric Mean\", geom_cv = \"CV % Geometric Mean\", median = \"Median\", min = \"Minimum\", max = \"Maximum\"\n ),\n imp_rule = \"1/3\",\n .aligns = \"decimal\"\n )\n\nresult <- build_table(lyt, df = adpc_1, alt_counts_df = adsl) %>% prune_table()\n\n# Decorating\nmain_title(result) <- \"Summary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\"\nsubtitles(result) <- c(\n \"Protocol: xxxxx\",\n paste(\"Analyte: \", unique(adpc_1$PARAM)),\n paste(\"Treatment:\", unique(adpc_1$ACTARM))\n)\nmain_footer(result) <- c(\"NE: Not Estimable\", \"ND: Not Derived\")\n\nresult\n\nSummary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\nProtocol: xxxxx\nAnalyte: Plasma Drug X\nTreatment: A: Drug X\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n Number \n Visit of \n Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nA: Drug X (N=134) \n Day 1 \n 0 / Predose 134 134 ND ND ND NE ND 0 ND 0 \n 0.5 / 0.5H 134 0 12.6 1.51 12.0 12.5 12.2 12.6 9.72 15.6 \n 1 / 1H 134 0 16.2 1.63 10.0 16.1 10.1 16.2 12.6 19.9 \n 1.5 / 1.5H 134 0 15.6 1.46 9.3 15.6 9.3 15.5 12.3 19.0 \n 2 / 2H 134 0 13.4 1.35 10.1 13.4 10.0 13.3 10.8 16.5 \n 3 / 3H 134 0 8.47 1.25 14.7 8.38 15.0 8.40 5.88 10.9 \n 4 / 4H 134 0 4.79 1.02 21.2 4.69 22.0 4.79 2.70 7.09 \n 8 / 8H 134 0 0.348 0.180 51.7 0.303 58.4 0.318 0.0760 0.866 \n 12 / 12H 134 0 0.0224 0.0189 84.6 0.0156 111.6 0.0170 0.00200 0.0830\n Day 2 \n 24 / 24H 134 134 ND ND ND NE ND 0 ND 0 \n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n\nNE: Not Estimable\nND: Not Derived\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- lyt_rows %>%\n analyze_vars_in_cols(\n vars = c(\"AVAL\", \"AVALCAT1\", rep(\"AVAL\", 8)),\n .stats = c(\"n\", \"n_blq\", \"mean\", \"sd\", \"cv\", \"geom_mean\", \"geom_cv\", \"median\", \"min\", \"max\"),\n .formats = c(\n n = \"xx.\", n_blq = \"xx.\", mean = format_sigfig(3), sd = format_sigfig(3), cv = \"xx.x\", median = format_sigfig(3),\n geom_mean = format_sigfig(3), geom_cv = \"xx.x\", min = format_sigfig(3), max = format_sigfig(3)\n ),\n .labels = c(\n n = \"n\", n_blq = \"Number\\nof\\nLTRs/BLQs\", mean = \"Mean\", sd = \"SD\", cv = \"CV (%) Mean\",\n geom_mean = \"Geometric Mean\", geom_cv = \"CV % Geometric Mean\", median = \"Median\", min = \"Minimum\", max = \"Maximum\"\n ),\n imp_rule = \"1/2\",\n .aligns = \"decimal\"\n )\n\nresult <- build_table(lyt, df = adpc_1, alt_counts_df = adsl) %>% prune_table()\n\n# Decorate table\nmain_title(result) <- \"Summary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\"\nsubtitles(result) <- c(\n \"Protocol: xxxxx\",\n paste(\"Analyte: \", unique(adpc_1$PARAM)),\n paste(\"Treatment:\", unique(adpc_1$ACTARM))\n)\nmain_footer(result) <- \"ND: Not Derived\"\n\nresult\n\nSummary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\nProtocol: xxxxx\nAnalyte: Plasma Drug X\nTreatment: A: Drug X\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n Number \n Visit of \n Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nA: Drug X (N=134) \n Day 1 \n 0 / Predose 134 134 ND ND ND ND ND ND ND 0 \n 0.5 / 0.5H 134 0 12.6 1.51 12.0 12.5 12.2 12.6 9.72 15.6 \n 1 / 1H 134 0 16.2 1.63 10.0 16.1 10.1 16.2 12.6 19.9 \n 1.5 / 1.5H 134 0 15.6 1.46 9.3 15.6 9.3 15.5 12.3 19.0 \n 2 / 2H 134 0 13.4 1.35 10.1 13.4 10.0 13.3 10.8 16.5 \n 3 / 3H 134 0 8.47 1.25 14.7 8.38 15.0 8.40 5.88 10.9 \n 4 / 4H 134 0 4.79 1.02 21.2 4.69 22.0 4.79 2.70 7.09 \n 8 / 8H 134 0 0.348 0.180 51.7 0.303 58.4 0.318 0.0760 0.866 \n 12 / 12H 134 0 0.0224 0.0189 84.6 0.0156 111.6 0.0170 0.00200 0.0830\n Day 2 \n 24 / 24H 134 134 ND ND ND ND ND ND ND 0 \n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n\nND: Not Derived\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl %>%\n filter(ACTARM == \"A: Drug X\")\nadpc <- random.cdisc.data::cadpc %>%\n filter(ACTARM == \"A: Drug X\", PARAM == \"Plasma Drug X\")\n\n# Setting up the data\nadpc_1 <- adpc %>%\n mutate(\n NFRLT = as.factor(NFRLT),\n AVALCAT1 = as.factor(AVALCAT1),\n NOMTPT = as.factor(paste(NFRLT, \"/\", PCTPT))\n ) %>%\n select(NOMTPT, ACTARM, VISIT, AVAL, PARAM, AVALCAT1)\n\nadpc_1$NOMTPT <- factor(\n adpc_1$NOMTPT,\n levels = levels(adpc_1$NOMTPT)[order(as.numeric(gsub(\".*?([0-9\\\\.]+).*\", \"\\\\1\", levels(adpc_1$NOMTPT))))]\n)\n\n# Row structure\nlyt_rows <- basic_table() %>%\n split_rows_by(\n var = \"ACTARM\",\n split_fun = drop_split_levels,\n split_label = \"Treatment Group\",\n label_pos = \"topleft\"\n ) %>%\n add_rowcounts(alt_counts = TRUE) %>%\n split_rows_by(\n var = \"VISIT\",\n split_fun = drop_split_levels,\n split_label = \"Visit\",\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n var = \"NOMTPT\",\n split_fun = drop_split_levels,\n split_label = \"Nominal Time (hr) / Timepoint\",\n label_pos = \"topleft\",\n child_labels = \"hidden\"\n )", + "text": "Output\n\n\nStandard Table (Stats in Columns)\nTable Implementing 1/3 Imputation Rule\nTable Implementing 1/2 Imputation Rule\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- lyt_rows %>%\n analyze_vars_in_cols(\n vars = c(\"AVAL\", \"AVALCAT1\", rep(\"AVAL\", 8)),\n .stats = c(\"n\", \"n_blq\", \"mean\", \"sd\", \"cv\", \"geom_mean\", \"geom_cv\", \"median\", \"min\", \"max\"),\n .formats = c(\n n = \"xx.\", n_blq = \"xx.\", mean = format_sigfig(3), sd = format_sigfig(3), cv = \"xx.x\", median = format_sigfig(3),\n geom_mean = format_sigfig(3), geom_cv = \"xx.x\", min = format_sigfig(3), max = format_sigfig(3)\n ),\n .labels = c(\n n = \"n\", n_blq = \"Number\\nof\\nLTRs/BLQs\", mean = \"Mean\", sd = \"SD\", cv = \"CV (%) Mean\",\n geom_mean = \"Geometric Mean\", geom_cv = \"CV % Geometric Mean\", median = \"Median\", min = \"Minimum\", max = \"Maximum\"\n ),\n na_str = \"NE\",\n .aligns = \"decimal\"\n )\n\nresult <- build_table(lyt, df = adpc_1, alt_counts_df = adsl) %>% prune_table()\n\n# Decorating\nmain_title(result) <- \"Summary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\"\nsubtitles(result) <- c(\n \"Protocol: xxxxx\",\n paste(\"Analyte: \", unique(adpc_1$PARAM)),\n paste(\"Treatment:\", unique(adpc_1$ACTARM))\n)\nmain_footer(result) <- \"NE: Not Estimable\"\n\nresult\n\nSummary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\nProtocol: xxxxx\nAnalyte: Plasma Drug X\nTreatment: A: Drug X\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Group Number \n Visit of \n Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nA: Drug X (N=134) \n Day 1 \n 0 / Predose 134 134 0 0 NE NE NE 0 0 0 \n 0.5 / 0.5H 134 0 12.6 1.51 12.0 12.5 12.2 12.6 9.72 15.6 \n 1 / 1H 134 0 16.2 1.63 10.0 16.1 10.1 16.2 12.6 19.9 \n 1.5 / 1.5H 134 0 15.6 1.46 9.3 15.6 9.3 15.5 12.3 19.0 \n 2 / 2H 134 0 13.4 1.35 10.1 13.4 10.0 13.3 10.8 16.5 \n 3 / 3H 134 0 8.47 1.25 14.7 8.38 15.0 8.40 5.88 10.9 \n 4 / 4H 134 0 4.79 1.02 21.2 4.69 22.0 4.79 2.70 7.09 \n 8 / 8H 134 0 0.348 0.180 51.7 0.303 58.4 0.318 0.0760 0.866 \n 12 / 12H 134 0 0.0224 0.0189 84.6 0.0156 111.6 0.0170 0.00200 0.0830\n Day 2 \n 24 / 24H 134 134 0 0 NE NE NE 0 0 0 \n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n\nNE: Not Estimable\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- lyt_rows %>%\n analyze_vars_in_cols(\n vars = c(\"AVAL\", \"AVALCAT1\", rep(\"AVAL\", 8)),\n .stats = c(\"n\", \"n_blq\", \"mean\", \"sd\", \"cv\", \"geom_mean\", \"geom_cv\", \"median\", \"min\", \"max\"),\n .formats = c(\n n = \"xx.\", n_blq = \"xx.\", mean = format_sigfig(3), sd = format_sigfig(3), cv = \"xx.x\", median = format_sigfig(3),\n geom_mean = format_sigfig(3), geom_cv = \"xx.x\", min = format_sigfig(3), max = format_sigfig(3)\n ),\n .labels = c(\n n = \"n\", n_blq = \"Number\\nof\\nLTRs/BLQs\", mean = \"Mean\", sd = \"SD\", cv = \"CV (%) Mean\",\n geom_mean = \"Geometric Mean\", geom_cv = \"CV % Geometric Mean\", median = \"Median\", min = \"Minimum\", max = \"Maximum\"\n ),\n imp_rule = \"1/3\",\n .aligns = \"decimal\"\n )\n\nresult <- build_table(lyt, df = adpc_1, alt_counts_df = adsl) %>% prune_table()\n\n# Decorating\nmain_title(result) <- \"Summary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\"\nsubtitles(result) <- c(\n \"Protocol: xxxxx\",\n paste(\"Analyte: \", unique(adpc_1$PARAM)),\n paste(\"Treatment:\", unique(adpc_1$ACTARM))\n)\nmain_footer(result) <- c(\"NE: Not Estimable\", \"ND: Not Derived\")\n\nresult\n\nSummary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\nProtocol: xxxxx\nAnalyte: Plasma Drug X\nTreatment: A: Drug X\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Group Number \n Visit of \n Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nA: Drug X (N=134) \n Day 1 \n 0 / Predose 134 134 ND ND ND NE ND 0 ND 0 \n 0.5 / 0.5H 134 0 12.6 1.51 12.0 12.5 12.2 12.6 9.72 15.6 \n 1 / 1H 134 0 16.2 1.63 10.0 16.1 10.1 16.2 12.6 19.9 \n 1.5 / 1.5H 134 0 15.6 1.46 9.3 15.6 9.3 15.5 12.3 19.0 \n 2 / 2H 134 0 13.4 1.35 10.1 13.4 10.0 13.3 10.8 16.5 \n 3 / 3H 134 0 8.47 1.25 14.7 8.38 15.0 8.40 5.88 10.9 \n 4 / 4H 134 0 4.79 1.02 21.2 4.69 22.0 4.79 2.70 7.09 \n 8 / 8H 134 0 0.348 0.180 51.7 0.303 58.4 0.318 0.0760 0.866 \n 12 / 12H 134 0 0.0224 0.0189 84.6 0.0156 111.6 0.0170 0.00200 0.0830\n Day 2 \n 24 / 24H 134 134 ND ND ND NE ND 0 ND 0 \n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n\nNE: Not Estimable\nND: Not Derived\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- lyt_rows %>%\n analyze_vars_in_cols(\n vars = c(\"AVAL\", \"AVALCAT1\", rep(\"AVAL\", 8)),\n .stats = c(\"n\", \"n_blq\", \"mean\", \"sd\", \"cv\", \"geom_mean\", \"geom_cv\", \"median\", \"min\", \"max\"),\n .formats = c(\n n = \"xx.\", n_blq = \"xx.\", mean = format_sigfig(3), sd = format_sigfig(3), cv = \"xx.x\", median = format_sigfig(3),\n geom_mean = format_sigfig(3), geom_cv = \"xx.x\", min = format_sigfig(3), max = format_sigfig(3)\n ),\n .labels = c(\n n = \"n\", n_blq = \"Number\\nof\\nLTRs/BLQs\", mean = \"Mean\", sd = \"SD\", cv = \"CV (%) Mean\",\n geom_mean = \"Geometric Mean\", geom_cv = \"CV % Geometric Mean\", median = \"Median\", min = \"Minimum\", max = \"Maximum\"\n ),\n imp_rule = \"1/2\",\n .aligns = \"decimal\"\n )\n\nresult <- build_table(lyt, df = adpc_1, alt_counts_df = adsl) %>% prune_table()\n\n# Decorate table\nmain_title(result) <- \"Summary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\"\nsubtitles(result) <- c(\n \"Protocol: xxxxx\",\n paste(\"Analyte: \", unique(adpc_1$PARAM)),\n paste(\"Treatment:\", unique(adpc_1$ACTARM))\n)\nmain_footer(result) <- \"ND: Not Derived\"\n\nresult\n\nSummary of PK Concentrations by Nominal Time and Treatment: PK Evaluable\nProtocol: xxxxx\nAnalyte: Plasma Drug X\nTreatment: A: Drug X\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Group Number \n Visit of \n Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nA: Drug X (N=134) \n Day 1 \n 0 / Predose 134 134 ND ND ND ND ND ND ND 0 \n 0.5 / 0.5H 134 0 12.6 1.51 12.0 12.5 12.2 12.6 9.72 15.6 \n 1 / 1H 134 0 16.2 1.63 10.0 16.1 10.1 16.2 12.6 19.9 \n 1.5 / 1.5H 134 0 15.6 1.46 9.3 15.6 9.3 15.5 12.3 19.0 \n 2 / 2H 134 0 13.4 1.35 10.1 13.4 10.0 13.3 10.8 16.5 \n 3 / 3H 134 0 8.47 1.25 14.7 8.38 15.0 8.40 5.88 10.9 \n 4 / 4H 134 0 4.79 1.02 21.2 4.69 22.0 4.79 2.70 7.09 \n 8 / 8H 134 0 0.348 0.180 51.7 0.303 58.4 0.318 0.0760 0.866 \n 12 / 12H 134 0 0.0224 0.0189 84.6 0.0156 111.6 0.0170 0.00200 0.0830\n Day 2 \n 24 / 24H 134 134 ND ND ND ND ND ND ND 0 \n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n\nND: Not Derived\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl %>%\n filter(ACTARM == \"A: Drug X\")\nadpc <- random.cdisc.data::cadpc %>%\n filter(ACTARM == \"A: Drug X\", PARAM == \"Plasma Drug X\")\n\n# Setting up the data\nadpc_1 <- adpc %>%\n mutate(\n NFRLT = as.factor(NFRLT),\n AVALCAT1 = as.factor(AVALCAT1),\n NOMTPT = as.factor(paste(NFRLT, \"/\", PCTPT))\n ) %>%\n select(NOMTPT, ACTARM, VISIT, AVAL, PARAM, AVALCAT1)\n\nadpc_1$NOMTPT <- factor(\n adpc_1$NOMTPT,\n levels = levels(adpc_1$NOMTPT)[order(as.numeric(gsub(\".*?([0-9\\\\.]+).*\", \"\\\\1\", levels(adpc_1$NOMTPT))))]\n)\n\n# Row structure\nlyt_rows <- basic_table() %>%\n split_rows_by(\n var = \"ACTARM\",\n split_fun = drop_split_levels,\n split_label = \"Treatment Group\",\n label_pos = \"topleft\"\n ) %>%\n add_rowcounts(alt_counts = TRUE) %>%\n split_rows_by(\n var = \"VISIT\",\n split_fun = drop_split_levels,\n split_label = \"Visit\",\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n var = \"NOMTPT\",\n split_fun = drop_split_levels,\n split_label = \"Nominal Time (hr) / Timepoint\",\n label_pos = \"topleft\",\n child_labels = \"hidden\"\n )", "crumbs": [ "Tables", "Pharmacokinetic", @@ -601,7 +601,7 @@ "href": "tables/pharmacokinetic/pkct01.html#reproducibility", "title": "PKCT01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:09:21 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:05:19 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Pharmacokinetic", @@ -613,7 +613,7 @@ "href": "tables/pharmacokinetic/pkpt07.html#output", "title": "PKPT07", "section": "Output", - "text": "Output\n\n\nStandard Table – Urine\nData Setup\n\n\n\n\nCode# lyt creation\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"ARMCD\",\n split_fun = trim_levels_in_group(\"ARMCD\"),\n label_pos = \"topleft\",\n split_label = \"Treatment Arm\"\n ) %>%\n split_rows_by(\n var = \"PKPARAM\",\n label_pos = \"topleft\",\n split_label = \"PK Parameter\",\n child_labels = \"hidden\"\n ) %>%\n analyze_vars_in_cols(\n vars = \"AVAL\",\n .stats = c(\n \"n\", \"mean\", \"sd\", \"cv\",\n \"geom_mean\", \"geom_cv\", \"median\",\n \"min\", \"max\"\n ),\n .labels = c(\n n = \"n\",\n mean = \"Mean\",\n sd = \"SD\",\n cv = \"CV (%)\",\n geom_mean = \"Geometric Mean\",\n geom_cv = \"CV % Geometric Mean\",\n median = \"Median\",\n min = \"Minimum\",\n max = \"Maximum\"\n ),\n .formats = c(\n n = \"xx.\",\n mean = format_sigfig(3),\n sd = format_sigfig(3),\n cv = \"xx.x\",\n median = format_sigfig(3),\n geom_mean = format_sigfig(3),\n geom_cv = \"xx.x\",\n min = format_sigfig(3),\n max = format_sigfig(3)\n )\n )\n\n\nPlasma Drug X\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp0 <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp0)\nmain_title(result) <- paste(\"Summary of\", unique(adpp0$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp0$PPCAT), \"\\nVisit:\", unique(adpp0$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X \nVisit: CYCLE 1 DAY 1\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A \n RENALCLD (L/hr/mg) 134 0.00487 0.000965 19.8 0.00477 21.2 0.00497 0.00238 0.00726\nARM C \n RENALCLD (L/hr/mg) 132 0.00511 0.000934 18.3 0.00502 19.7 0.00515 0.00236 0.00741\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug Y\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp1 <- adpp %>%\n filter(PPCAT == \"Plasma Drug Y\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp1)\nmain_title(result) <- paste(\"Summary of\", unique(adpp1$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp1$PPCAT), \"\\nVisit:\", unique(adpp1$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y \nVisit: CYCLE 1 DAY 1\n\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C \n RENALCLD (L/hr/mg) 132 0.00509 0.00103 20.3 0.00499 21.4 0.00502 0.00236 0.00794\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\nlibrary(stringr)\n\nadpp <- random.cdisc.data::cadpp\nadpp <- adpp %>%\n filter(AVISIT == \"CYCLE 1 DAY 1\", str_detect(tolower(PARAM), regex(\"norm by dose\", ignore_case = TRUE)))", + "text": "Output\n\n\nStandard Table – Urine\nData Setup\n\n\n\n\nCode# lyt creation\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"ARMCD\",\n split_fun = trim_levels_in_group(\"ARMCD\"),\n label_pos = \"topleft\",\n split_label = \"Treatment Arm\"\n ) %>%\n split_rows_by(\n var = \"PKPARAM\",\n label_pos = \"topleft\",\n split_label = \"PK Parameter\",\n child_labels = \"hidden\"\n ) %>%\n analyze_vars_in_cols(\n vars = \"AVAL\",\n .stats = c(\n \"n\", \"mean\", \"sd\", \"cv\",\n \"geom_mean\", \"geom_cv\", \"median\",\n \"min\", \"max\"\n ),\n .labels = c(\n n = \"n\",\n mean = \"Mean\",\n sd = \"SD\",\n cv = \"CV (%)\",\n geom_mean = \"Geometric Mean\",\n geom_cv = \"CV % Geometric Mean\",\n median = \"Median\",\n min = \"Minimum\",\n max = \"Maximum\"\n ),\n .formats = c(\n n = \"xx.\",\n mean = format_sigfig(3),\n sd = format_sigfig(3),\n cv = \"xx.x\",\n median = format_sigfig(3),\n geom_mean = format_sigfig(3),\n geom_cv = \"xx.x\",\n min = format_sigfig(3),\n max = format_sigfig(3)\n )\n )\n\n\nPlasma Drug X\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp0 <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp0)\nmain_title(result) <- paste(\"Summary of\", unique(adpp0$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp0$PPCAT), \"\\nVisit:\", unique(adpp0$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X \nVisit: CYCLE 1 DAY 1\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A \n RENALCLD (L/hr/mg) 134 0.00487 0.000965 19.8 0.00477 21.2 0.00497 0.00238 0.00726\nARM C \n RENALCLD (L/hr/mg) 132 0.00511 0.000934 18.3 0.00502 19.7 0.00515 0.00236 0.00741\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug Y\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp1 <- adpp %>%\n filter(PPCAT == \"Plasma Drug Y\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp1)\nmain_title(result) <- paste(\"Summary of\", unique(adpp1$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp1$PPCAT), \"\\nVisit:\", unique(adpp1$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y \nVisit: CYCLE 1 DAY 1\n\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C \n RENALCLD (L/hr/mg) 132 0.00509 0.00103 20.3 0.00499 21.4 0.00502 0.00236 0.00794\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\nlibrary(stringr)\n\nadpp <- random.cdisc.data::cadpp\nadpp <- adpp %>%\n filter(AVISIT == \"CYCLE 1 DAY 1\", str_detect(tolower(PARAM), regex(\"norm by dose\", ignore_case = TRUE)))", "crumbs": [ "Tables", "Pharmacokinetic", @@ -625,7 +625,7 @@ "href": "tables/pharmacokinetic/pkpt07.html#reproducibility", "title": "PKPT07", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:09:05 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr * 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:05:03 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr * 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Pharmacokinetic", @@ -637,7 +637,7 @@ "href": "tables/pharmacokinetic/pkpt11.html#output", "title": "PKPT11", "section": "Output", - "text": "Output\n\n\nStandard Table – Plasma\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# create layout\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"PKPARAM\",\n label_pos = \"topleft\",\n split_fun = keep_split_levels(c(\"AUCinf obs (day*ug/mL)\", \"Cmax (ug/mL)\")),\n split_label = \"PK Parameter\"\n ) %>%\n split_rows_by(\n var = \"COMP\",\n split_fun = remove_split_levels(paste0(comp_dose, \"/\", comp_dose)),\n indent_mod = 11L,\n child_labels = \"hidden\"\n ) %>%\n split_cols_by_multivar(\n vars = rep(\"AVAL\", 4),\n varlabels = c(\n \"n\",\n \"Geometric Mean Ratio\",\n \"90% CI Lower Bound\",\n \"90% CI Upper Bound\"\n )\n ) %>%\n analyze_colvars(\n afun = afun_pk_gmr(),\n extra_args = list(\n compare_dose = comp_dose,\n denom = TRUE,\n arm_var = arm_var\n )\n ) %>%\n append_varlabels(adpp0, \"COMP\", 12L)\n\nresult <- build_table(lyt, df = adpp0)\n\nmain_title(result) <- paste0(\n \"Estimated Ratios of Geometric Means and 90% Confidence Intervals for AUC and CMAX Following \",\n unique(adpp0$REGIMEN), \"\\nof \", comp_dose, \" in Comparison with \",\n paste(other_doses, collapse = \" & \"), \", PK Population\"\n)\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp0$PPCAT))\n\nresult\n\nEstimated Ratios of Geometric Means and 90% Confidence Intervals for AUC and CMAX Following BID\nof A: Drug X in Comparison with C: Combination, PK Population\nAnalyte: Plasma Drug X\n\n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n Comparison n Geometric Mean Ratio 90% CI Lower Bound 90% CI Upper Bound\n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nAUCinf obs (day*ug/mL) \n C: Combination/A: Drug X 266 0.962 0.925 1.00 \nCmax (ug/mL) \n C: Combination/A: Drug X 266 0.997 0.958 1.04 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadpp <- random.cdisc.data::cadpp\n\n# Comparator Dose - A: Drug X\narm_var <- \"TRT01A\"\ncomp_dose <- \"A: Drug X\"\nother_doses <- as.character(unique(adpp[[arm_var]])[unique(adpp[[arm_var]]) != comp_dose])\n\nadpp <- adpp %>%\n filter(AVISIT == \"CYCLE 1 DAY 1\") %>%\n mutate(\n COMP = paste0(TRT01A, \"/\", comp_dose),\n COMP_AVAL = ifelse(TRT01A == comp_dose, paste0(AVAL, comp_dose), AVAL)\n )\n\nfor (dose in other_doses) {\n temp_df <- adpp[adpp[[arm_var]] == comp_dose, ]\n temp_df$COMP <- paste0(dose, \"/\", comp_dose)\n adpp <- rbind(adpp, temp_df)\n}\n\n# Plasma Drug X\nadpp0 <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n var_relabel(COMP = \"Comparison\")\n\n# statistics function\ns_gmr <- function(df,\n compare_dose = comp_dose, # comparator, defaults to comp_dose defined above (string)\n denom = TRUE, # whether to use comparator as denominator, defaults to TRUE (logical)\n arm_var = arm_var) { # arm variable, defaults to arm_var defined above (string)\n which_num <- !grepl(compare_dose, df[[arm_var]])\n\n x_num <- as.numeric(df[which_num, ][[\"AVAL\"]])\n x_num <- x_num[!is.na(x_num)]\n x_num_no_negative_vals <- x_num\n x_num_no_negative_vals[x_num_no_negative_vals <= 0] <- NA\n\n x_denom <- as.numeric(gsub(compare_dose, \"\", df[!which_num, ][[\"AVAL\"]]))\n x_denom <- x_denom[!is.na(x_denom)]\n x_denom_no_negative_vals <- x_denom\n x_denom_no_negative_vals[x_denom_no_negative_vals <= 0] <- NA\n\n x_num_log <- log(x_num_no_negative_vals)\n x_denom_log <- log(x_denom_no_negative_vals)\n\n if (denom) {\n geom_mean_ratio <- exp(mean(x_num_log, na.rm = FALSE)) / exp(mean(x_denom_log, na.rm = FALSE))\n geom_mean_ci <- t.test(x_num_log, x_denom_log, conf.level = 0.90)$conf.int\n } else {\n geom_mean_ratio <- exp(mean(x_denom_log, na.rm = FALSE)) / exp(mean(x_num_log, na.rm = FALSE))\n geom_mean_ci <- t.test(x_denom_log, x_num_log, conf.level = 0.90)$conf.int\n }\n\n list(\n n = nrow(df),\n geom_mean_ratio = geom_mean_ratio,\n gmr_ci_lwr = exp(geom_mean_ci[1]),\n gmr_ci_upr = exp(geom_mean_ci[2])\n )\n}\n\nafun_pk_gmr <- function(\n .formats = list(\n n = \"xx.\",\n geom_mean_ratio = format_sigfig(3),\n gmr_ci_lwr = format_sigfig(3),\n gmr_ci_upr = format_sigfig(3)\n ),\n compare_dose = comp_dose,\n denom = TRUE) {\n checkmate::assert_list(.formats)\n checkmate::assert_subset(names(.formats), c(\"n\", \"geom_mean_ratio\", \"gmr_ci_lwr\", \"gmr_ci_upr\"))\n\n afun_lst <- Map(\n function(stat, fmt, compare_dose, denom, arm_var) {\n function(df, .spl_context) {\n x_stat <- s_gmr(df, compare_dose = compare_dose, denom = denom, arm_var = arm_var)[[stat]]\n rcell(x_stat, format = fmt, label = tail(.spl_context$value, 1))\n }\n },\n stat = names(.formats),\n fmt = .formats,\n compare_dose = compare_dose,\n denom = denom,\n arm_var = arm_var\n )\n\n afun_lst\n}", + "text": "Output\n\n\nStandard Table – Plasma\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# create layout\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"PKPARAM\",\n label_pos = \"topleft\",\n split_fun = keep_split_levels(c(\"AUCinf obs (day*ug/mL)\", \"Cmax (ug/mL)\")),\n split_label = \"PK Parameter\"\n ) %>%\n split_rows_by(\n var = \"COMP\",\n split_fun = remove_split_levels(paste0(comp_dose, \"/\", comp_dose)),\n indent_mod = 11L,\n child_labels = \"hidden\"\n ) %>%\n split_cols_by_multivar(\n vars = rep(\"AVAL\", 4),\n varlabels = c(\n \"n\",\n \"Geometric Mean Ratio\",\n \"90% CI Lower Bound\",\n \"90% CI Upper Bound\"\n )\n ) %>%\n analyze_colvars(\n afun = afun_pk_gmr(),\n extra_args = list(\n compare_dose = comp_dose,\n denom = TRUE,\n arm_var = arm_var\n )\n ) %>%\n append_varlabels(adpp0, \"COMP\", 12L)\n\nresult <- build_table(lyt, df = adpp0)\n\nmain_title(result) <- paste0(\n \"Estimated Ratios of Geometric Means and 90% Confidence Intervals for AUC and CMAX Following \",\n unique(adpp0$REGIMEN), \"\\nof \", comp_dose, \" in Comparison with \",\n paste(other_doses, collapse = \" & \"), \", PK Population\"\n)\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp0$PPCAT))\n\nresult\n\nEstimated Ratios of Geometric Means and 90% Confidence Intervals for AUC and CMAX Following BID\nof A: Drug X in Comparison with C: Combination, PK Population\nAnalyte: Plasma Drug X\n\n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nPK Parameter \n Comparison n Geometric Mean Ratio 90% CI Lower Bound 90% CI Upper Bound\n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nAUCinf obs (day*ug/mL) \n C: Combination/A: Drug X 266 0.962 0.925 1.00 \nCmax (ug/mL) \n C: Combination/A: Drug X 266 0.997 0.958 1.04 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadpp <- random.cdisc.data::cadpp\n\n# Comparator Dose - A: Drug X\narm_var <- \"TRT01A\"\ncomp_dose <- \"A: Drug X\"\nother_doses <- as.character(unique(adpp[[arm_var]])[unique(adpp[[arm_var]]) != comp_dose])\n\nadpp <- adpp %>%\n filter(AVISIT == \"CYCLE 1 DAY 1\") %>%\n mutate(\n COMP = paste0(TRT01A, \"/\", comp_dose),\n COMP_AVAL = ifelse(TRT01A == comp_dose, paste0(AVAL, comp_dose), AVAL)\n )\n\nfor (dose in other_doses) {\n temp_df <- adpp[adpp[[arm_var]] == comp_dose, ]\n temp_df$COMP <- paste0(dose, \"/\", comp_dose)\n adpp <- rbind(adpp, temp_df)\n}\n\n# Plasma Drug X\nadpp0 <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n var_relabel(COMP = \"Comparison\")\n\n# statistics function\ns_gmr <- function(df,\n compare_dose = comp_dose, # comparator, defaults to comp_dose defined above (string)\n denom = TRUE, # whether to use comparator as denominator, defaults to TRUE (logical)\n arm_var = arm_var) { # arm variable, defaults to arm_var defined above (string)\n which_num <- !grepl(compare_dose, df[[arm_var]])\n\n x_num <- as.numeric(df[which_num, ][[\"AVAL\"]])\n x_num <- x_num[!is.na(x_num)]\n x_num_no_negative_vals <- x_num\n x_num_no_negative_vals[x_num_no_negative_vals <= 0] <- NA\n\n x_denom <- as.numeric(gsub(compare_dose, \"\", df[!which_num, ][[\"AVAL\"]]))\n x_denom <- x_denom[!is.na(x_denom)]\n x_denom_no_negative_vals <- x_denom\n x_denom_no_negative_vals[x_denom_no_negative_vals <= 0] <- NA\n\n x_num_log <- log(x_num_no_negative_vals)\n x_denom_log <- log(x_denom_no_negative_vals)\n\n if (denom) {\n geom_mean_ratio <- exp(mean(x_num_log, na.rm = FALSE)) / exp(mean(x_denom_log, na.rm = FALSE))\n geom_mean_ci <- t.test(x_num_log, x_denom_log, conf.level = 0.90)$conf.int\n } else {\n geom_mean_ratio <- exp(mean(x_denom_log, na.rm = FALSE)) / exp(mean(x_num_log, na.rm = FALSE))\n geom_mean_ci <- t.test(x_denom_log, x_num_log, conf.level = 0.90)$conf.int\n }\n\n list(\n n = nrow(df),\n geom_mean_ratio = geom_mean_ratio,\n gmr_ci_lwr = exp(geom_mean_ci[1]),\n gmr_ci_upr = exp(geom_mean_ci[2])\n )\n}\n\nafun_pk_gmr <- function(\n .formats = list(\n n = \"xx.\",\n geom_mean_ratio = format_sigfig(3),\n gmr_ci_lwr = format_sigfig(3),\n gmr_ci_upr = format_sigfig(3)\n ),\n compare_dose = comp_dose,\n denom = TRUE) {\n checkmate::assert_list(.formats)\n checkmate::assert_subset(names(.formats), c(\"n\", \"geom_mean_ratio\", \"gmr_ci_lwr\", \"gmr_ci_upr\"))\n\n afun_lst <- Map(\n function(stat, fmt, compare_dose, denom, arm_var) {\n function(df, .spl_context) {\n x_stat <- s_gmr(df, compare_dose = compare_dose, denom = denom, arm_var = arm_var)[[stat]]\n rcell(x_stat, format = fmt, label = tail(.spl_context$value, 1))\n }\n },\n stat = names(.formats),\n fmt = .formats,\n compare_dose = compare_dose,\n denom = denom,\n arm_var = arm_var\n )\n\n afun_lst\n}", "crumbs": [ "Tables", "Pharmacokinetic", @@ -649,7 +649,7 @@ "href": "tables/pharmacokinetic/pkpt11.html#reproducibility", "title": "PKPT11", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:08:51 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] 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generate this website.\nDownload", "crumbs": [ "Tables", "Exposure", @@ -781,7 +781,7 @@ "href": "tables/adverse-events/aet09_smq.html#reproducibility", "title": "AET09_SMQ", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:06:54 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n 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teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Adverse Events", @@ -793,7 +793,7 @@ "href": "tables/adverse-events/aet02.html#output", "title": "AET02", "section": "Output", - "text": "Output\n\n\nStandard Table\nTable with Event Totals\nTable with High-Level Term\nTable with Preferred Terms Only\nTable with Fill-In of Treatment Groups\nTable of AEs with an Incidence Rate \\(\\geq\\) 5% in Any Treatment Group (subsetting preferred terms based on frequency)\nTable of AEs with an Incidence Rate \\(\\geq\\) 5% in Any Treatment Group (subsetting preferred terms based on frequency with high-level terms)\nTable of AEs with an Incidence Rate \\(\\geq\\) 10% in Any Treatment Group (subsetting preferred terms based on frequency)\nTable of AEs with an Incidence Rate \\(\\geq\\) 3 Patients in Any Treatment Group (subsetting preferred terms based on number of patients)\nTable of AEs with a Difference in Incidence Rate \\(\\geq\\) 5% Between Any Treatment (subsetting preferred terms based on difference in percentage between treatment groups)\nTable of AEs with an Incidence Rate \\(\\geq\\) 5% in B: Placebo (subsetting preferred terms based on frequency for a particular treatment group)\nTable of AEs with a Difference in Incidence Rate \\(\\geq\\) 5% Between Arm A and Arm B or Arm C (displaying preferred terms with a difference of at least x% between selected treatment groups)\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl)\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination All Patients\n MedDRA Preferred Term (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) 301 (75.2%) \nOverall total number of events 502 480 604 1586 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) 202 (50.5%) \n Total number of events 115 99 137 351 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) 128 (32.0%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) 122 (30.5%) \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n Total number of events 44 43 50 137 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) 192 (48.0%) \n Total number of events 102 106 127 335 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) 119 (29.8%) \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) 123 (30.8%) \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n Total number of events 47 51 54 152 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n Total number of events 39 40 57 136 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) 186 (46.5%) \n Total number of events 106 84 114 304 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) 120 (30.0%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) 112 (28.0%) \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n Total number of events 49 57 65 171 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nThe variable result corresponds to the adverse events table. However, it includes many empty rows accounting for events which were not reported. The table can be post-processed to prune empty rows and to sort rows, for example by occurrence.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- result %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination All Patients\n MedDRA Preferred Term (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) 301 (75.2%) \nOverall total number of events 502 480 604 1586 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) 202 (50.5%) \n Total number of events 115 99 137 351 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) 128 (32.0%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) 122 (30.5%) \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) 192 (48.0%) \n Total number of events 102 106 127 335 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) 123 (30.8%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) 119 (29.8%) \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) 186 (46.5%) \n Total number of events 106 84 114 304 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) 120 (30.0%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) 112 (28.0%) \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n Total number of events 49 57 65 171 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n Total number of events 39 40 57 136 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n Total number of events 44 43 50 137 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n Total number of events 47 51 54 152 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\"\n )\n ) %>%\n count_occurrences(vars = \"AEDECOD\", .indent_mods = -1L) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L) %>%\n count_values(\n \"STUDYID\",\n values = as.character(unique(adae$STUDYID)),\n .stats = \"count\",\n .labels = c(count = \"Total number of events\"),\n .indent_mods = c(count = -1L)\n )\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n )\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination All Patients\n MedDRA Preferred Term (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) 301 (75.2%) \nOverall total number of events 502 480 604 1586 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) 202 (50.5%) \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) 128 (32.0%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) 122 (30.5%) \n Total number of events 115 99 137 351 \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) 192 (48.0%) \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) 123 (30.8%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) 119 (29.8%) \n Total number of events 102 106 127 335 \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) 186 (46.5%) \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) 120 (30.0%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) 112 (28.0%) \n Total number of events 106 84 114 304 \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n Total number of events 49 57 65 171 \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n Total number of events 39 40 57 136 \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n Total number of events 44 43 50 137 \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n Total number of events 47 51 54 152 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEHLT\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n indent_mod = -1L,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEHLT)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n count_occurrences(vars = \"AEDECOD\", .indent_mods = -1L) %>%\n append_varlabels(adae, c(\"AEDECOD\"), indent = 2L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\n \n High Level Term A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) \nOverall total number of events 502 480 604 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Total number of events 115 99 137 \n hlt A.1.1.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Total number of events 115 99 137 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Total number of events 102 106 127 \n hlt B.2.2.3 \n Total number of patients with at least one adverse event 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Total number of events 50 55 68 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n hlt B.2.1.2 \n Total number of patients with at least one adverse event 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Total number of events 52 51 59 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Total number of events 106 84 114 \n hlt D.1.1.1 \n Total number of patients with at least one adverse event 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Total number of events 52 40 64 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n hlt D.1.1.4 \n Total number of patients with at least one adverse event 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Total number of events 54 44 50 \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Total number of events 49 57 65 \n hlt D.2.1.5 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Total number of events 49 57 65 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Total number of events 39 40 57 \n hlt C.2.1.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Total number of events 39 40 57 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Total number of events 44 43 50 \n hlt B.1.1.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Total number of events 44 43 50 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Total number of events 47 51 54 \n hlt C.1.1.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Total number of events 47 51 54 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n ),\n show_labels = \"hidden\"\n ) %>%\n count_occurrences(vars = \"AEDECOD\") %>%\n append_varlabels(adae, \"AEDECOD\")\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n sort_at_path(\n path = c(\"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\n A: Drug X B: Placebo C: Combination\nMedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) \nTotal number of events 502 480 604 \ndcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ndcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \ndcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \ndcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ndcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \ndcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ndcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ndcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ndcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ndcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadae_5 <- adae %>% dplyr::filter(ACTARM != \"C: Combination\")\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n count_occurrences(vars = \"AEDECOD\", .indent_mods = -1L) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae_5, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 0 \nOverall total number of events 502 480 0 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 0 \n Total number of events 115 99 0 \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 0 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 0 \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 0 \n Total number of events 102 106 0 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 0 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 0 \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 0 \n Total number of events 106 84 0 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 0 \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 0 \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 0 \n Total number of events 49 57 0 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 0 \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 0 \n Total number of events 44 43 0 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 0 \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 0 \n Total number of events 47 51 0 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 0 \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 0 \n Total number of events 39 40 0 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_any_col(\n atleast = 0.05,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n split_rows_by(\n \"AEHLT\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEHLT)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(vars = \"AEDECOD\") %>%\n append_varlabels(adae, c(\"AEDECOD\"), indent = 2L)\n\nresult <- build_table(lyt, adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\"),\n scorefun = cont_n_allcols,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences,\n decreasing = TRUE\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_any_col(\n atleast = 0.05,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\n \n High Level Term A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n hlt A.1.1.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n hlt B.2.2.3 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n hlt B.2.1.2 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n hlt D.1.1.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n hlt D.1.1.4 \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n hlt D.2.1.5 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n hlt C.2.1.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n hlt B.1.1.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n hlt C.1.1.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_any_col(\n atleast = 0.10,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n split_label = obj_label(adae$AEBODSYS),\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_count_in_any_col(\n atleast = 3,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fractions_difference(\n atleast = 0.05,\n col_names = levels(adsl$ACTARM)\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_cols(\n atleast = 0.05,\n col_names = c(\"B: Placebo\")\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition1 <- has_fractions_difference(atleast = 0.05, col_names = c(\"A: Drug X\", \"B: Placebo\"))\nrow_condition2 <- has_fractions_difference(atleast = 0.05, col_names = c(\"A: Drug X\", \"C: Combination\"))\nrow_condition <- row_condition1 | row_condition2\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadae <- df_explicit_na(adae) %>%\n var_relabel(\n AEBODSYS = \"MedDRA System Organ Class\",\n AEDECOD = \"MedDRA Preferred Term\"\n ) %>%\n filter(ANL01FL == \"Y\")\n\n# Define the split function\nsplit_fun <- drop_split_levels", + "text": "Output\n\n\nStandard Table\nTable with Event Totals\nTable with High-Level Term\nTable with Preferred Terms Only\nTable with Fill-In of Treatment Groups\nTable of AEs with an Incidence Rate \\(\\geq\\) 5% in Any Treatment Group (subsetting preferred terms based on frequency)\nTable of AEs with an Incidence Rate \\(\\geq\\) 5% in Any Treatment Group (subsetting preferred terms based on frequency with high-level terms)\nTable of AEs with an Incidence Rate \\(\\geq\\) 10% in Any Treatment Group (subsetting preferred terms based on frequency)\nTable of AEs with an Incidence Rate \\(\\geq\\) 3 Patients in Any Treatment Group (subsetting preferred terms based on number of patients)\nTable of AEs with a Difference in Incidence Rate \\(\\geq\\) 5% Between Any Treatment (subsetting preferred terms based on difference in percentage between treatment groups)\nTable of AEs with an Incidence Rate \\(\\geq\\) 5% in B: Placebo (subsetting preferred terms based on frequency for a particular treatment group)\nTable of AEs with a Difference in Incidence Rate \\(\\geq\\) 5% Between Arm A and Arm B or Arm C (displaying preferred terms with a difference of at least x% between selected treatment groups)\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl)\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination All Patients\n MedDRA Preferred Term (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) 301 (75.2%) \nOverall total number of events 502 480 604 1586 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) 202 (50.5%) \n Total number of events 115 99 137 351 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) 128 (32.0%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) 122 (30.5%) \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n Total number of events 44 43 50 137 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) 192 (48.0%) \n Total number of events 102 106 127 335 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) 119 (29.8%) \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) 123 (30.8%) \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n Total number of events 47 51 54 152 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n Total number of events 39 40 57 136 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) 186 (46.5%) \n Total number of events 106 84 114 304 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) 120 (30.0%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) 112 (28.0%) \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n Total number of events 49 57 65 171 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nThe variable result corresponds to the adverse events table. However, it includes many empty rows accounting for events which were not reported. The table can be post-processed to prune empty rows and to sort rows, for example by occurrence.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- result %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination All Patients\n MedDRA Preferred Term (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) 301 (75.2%) \nOverall total number of events 502 480 604 1586 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) 202 (50.5%) \n Total number of events 115 99 137 351 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) 128 (32.0%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) 122 (30.5%) \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) 192 (48.0%) \n Total number of events 102 106 127 335 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) 123 (30.8%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) 119 (29.8%) \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) 186 (46.5%) \n Total number of events 106 84 114 304 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) 120 (30.0%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) 112 (28.0%) \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n Total number of events 49 57 65 171 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n Total number of events 39 40 57 136 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n Total number of events 44 43 50 137 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n Total number of events 47 51 54 152 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\"\n )\n ) %>%\n count_occurrences(vars = \"AEDECOD\", .indent_mods = -1L) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L) %>%\n count_values(\n \"STUDYID\",\n values = as.character(unique(adae$STUDYID)),\n .stats = \"count\",\n .labels = c(count = \"Total number of events\"),\n .indent_mods = c(count = -1L)\n )\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n )\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination All Patients\n MedDRA Preferred Term (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) 301 (75.2%) \nOverall total number of events 502 480 604 1586 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) 202 (50.5%) \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) 128 (32.0%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) 122 (30.5%) \n Total number of events 115 99 137 351 \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) 192 (48.0%) \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) 123 (30.8%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) 119 (29.8%) \n Total number of events 102 106 127 335 \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) 186 (46.5%) \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) 120 (30.0%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) 112 (28.0%) \n Total number of events 106 84 114 304 \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) 133 (33.2%) \n Total number of events 49 57 65 171 \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) 112 (28.0%) \n Total number of events 39 40 57 136 \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) 111 (27.8%) \n Total number of events 44 43 50 137 \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) 106 (26.5%) \n Total number of events 47 51 54 152 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEHLT\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n indent_mod = -1L,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEHLT)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n count_occurrences(vars = \"AEDECOD\", .indent_mods = -1L) %>%\n append_varlabels(adae, c(\"AEDECOD\"), indent = 2L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nMedDRA System Organ Class \n High Level Term A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) \nOverall total number of events 502 480 604 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Total number of events 115 99 137 \n hlt A.1.1.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Total number of events 115 99 137 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Total number of events 102 106 127 \n hlt B.2.2.3 \n Total number of patients with at least one adverse event 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Total number of events 50 55 68 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n hlt B.2.1.2 \n Total number of patients with at least one adverse event 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Total number of events 52 51 59 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Total number of events 106 84 114 \n hlt D.1.1.1 \n Total number of patients with at least one adverse event 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Total number of events 52 40 64 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n hlt D.1.1.4 \n Total number of patients with at least one adverse event 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Total number of events 54 44 50 \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Total number of events 49 57 65 \n hlt D.2.1.5 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Total number of events 49 57 65 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Total number of events 39 40 57 \n hlt C.2.1.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Total number of events 39 40 57 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Total number of events 44 43 50 \n hlt B.1.1.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Total number of events 44 43 50 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Total number of events 47 51 54 \n hlt C.1.1.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Total number of events 47 51 54 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n ),\n show_labels = \"hidden\"\n ) %>%\n count_occurrences(vars = \"AEDECOD\") %>%\n append_varlabels(adae, \"AEDECOD\")\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n sort_at_path(\n path = c(\"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\n A: Drug X B: Placebo C: Combination\nMedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 103 (78.0%) \nTotal number of events 502 480 604 \ndcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ndcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \ndcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \ndcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ndcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \ndcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ndcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ndcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ndcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ndcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadae_5 <- adae %>% dplyr::filter(ACTARM != \"C: Combination\")\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Overall total number of events\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event\",\n nonunique = \"Total number of events\"\n )\n ) %>%\n count_occurrences(vars = \"AEDECOD\", .indent_mods = -1L) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae_5, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event 100 (74.6%) 98 (73.1%) 0 \nOverall total number of events 502 480 0 \ncl A.1 \n Total number of patients with at least one adverse event 68 (50.7%) 58 (43.3%) 0 \n Total number of events 115 99 0 \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 0 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 0 \ncl B.2 \n Total number of patients with at least one adverse event 62 (46.3%) 56 (41.8%) 0 \n Total number of events 102 106 0 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 0 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 0 \ncl D.1 \n Total number of patients with at least one adverse event 64 (47.8%) 54 (40.3%) 0 \n Total number of events 106 84 0 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 0 \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 0 \ncl D.2 \n Total number of patients with at least one adverse event 37 (27.6%) 46 (34.3%) 0 \n Total number of events 49 57 0 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 0 \ncl B.1 \n Total number of patients with at least one adverse event 38 (28.4%) 37 (27.6%) 0 \n Total number of events 44 43 0 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 0 \ncl C.1 \n Total number of patients with at least one adverse event 36 (26.9%) 34 (25.4%) 0 \n Total number of events 47 51 0 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 0 \ncl C.2 \n Total number of patients with at least one adverse event 28 (20.9%) 36 (26.9%) 0 \n Total number of events 39 40 0 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_any_col(\n atleast = 0.05,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n split_rows_by(\n \"AEHLT\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEHLT)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(vars = \"AEDECOD\") %>%\n append_varlabels(adae, c(\"AEDECOD\"), indent = 2L)\n\nresult <- build_table(lyt, adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\"),\n scorefun = cont_n_allcols,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences,\n decreasing = TRUE\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_any_col(\n atleast = 0.05,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class \n High Level Term A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n hlt A.1.1.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n hlt B.2.2.3 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n hlt B.2.1.2 \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n hlt D.1.1.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n hlt D.1.1.4 \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n hlt D.2.1.5 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n hlt C.2.1.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n hlt B.1.1.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n hlt C.1.1.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_any_col(\n atleast = 0.10,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n split_label = obj_label(adae$AEBODSYS),\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_count_in_any_col(\n atleast = 3,\n col_names = names(table(adsl$ACTARM))\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fractions_difference(\n atleast = 0.05,\n col_names = levels(adsl$ACTARM)\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition <- has_fraction_in_cols(\n atleast = 0.05,\n col_names = c(\"B: Placebo\")\n)\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n dcd B.1.1.1.1 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n dcd C.1.1.1.3 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ACTARM\") %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"Total number of patients with at least one adverse event\"\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = 1L\n ) %>%\n append_varlabels(adae, \"AEDECOD\", indent = 1L)\n\nresult <- build_table(lyt, df = adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\ncriteria_fun <- function(tr) is(tr, \"ContentRow\")\nresult <- trim_rows(result, criteria = criteria_fun)\n\nrow_condition1 <- has_fractions_difference(atleast = 0.05, col_names = c(\"A: Drug X\", \"B: Placebo\"))\nrow_condition2 <- has_fractions_difference(atleast = 0.05, col_names = c(\"A: Drug X\", \"C: Combination\"))\nrow_condition <- row_condition1 | row_condition2\nresult <- prune_table(result, keep_rows(row_condition))\n\nresult\n\nMedDRA System Organ Class A: Drug X B: Placebo C: Combination\n MedDRA Preferred Term (N=134) (N=134) (N=132) \n————————————————————————————————————————————————————————————————————\ncl A.1 \n dcd A.1.1.1.1 45 (33.6%) 31 (23.1%) 52 (39.4%) \ncl B.2 \n dcd B.2.2.3.1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n dcd D.1.1.1.1 42 (31.3%) 32 (23.9%) 46 (34.8%) \ncl D.2 \n dcd D.2.1.5.3 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n dcd C.2.1.2.1 28 (20.9%) 36 (26.9%) 48 (36.4%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadae <- df_explicit_na(adae) %>%\n var_relabel(\n AEBODSYS = \"MedDRA System Organ Class\",\n AEDECOD = \"MedDRA Preferred Term\"\n ) %>%\n filter(ANL01FL == \"Y\")\n\n# Define the split function\nsplit_fun <- drop_split_levels", "crumbs": [ "Tables", "Adverse Events", @@ -817,7 +817,7 @@ "href": "tables/adverse-events/aet02.html#reproducibility", "title": "AET02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:06:09 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.0 2024-11-26 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n 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[1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9090 2024-11-27 [1] https://p~\n teal.code * 0.5.0.9019 2024-11-27 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-27 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-27 [1] https://p~\n teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:02:09 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] 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1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Adverse Events", @@ -829,7 +829,7 @@ "href": "tables/adverse-events/aet09.html#output", "title": "AET09", "section": "Output", - "text": "Output\n\n\nStandard Table\nTable Including High-Level Terms\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Overall total number of events related to study drug\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae_f$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Total number of events related to study drug\"\n )\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae_f, \"AEDECOD\", indent = 1L)\n\ntbl1 <- build_table(\n lyt = lyt,\n df = adae_f,\n alt_counts_df = adsl\n) %>%\n prune_table()\n\nresult <- tbl1 %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nBody System or Organ Class A: Drug X B: Placebo C: Combination All Patients\n Dictionary-Derived Term (N=134) (N=134) (N=132) (N=400) \n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event related to study drug 105 (78.4%) 108 (80.6%) 109 (82.6%) 322 (80.5%) \nOverall total number of events related to study drug 282 299 336 917 \ncl D.2 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 58 (43.3%) 57 (43.2%) 162 (40.5%) \n Total number of events related to study drug 62 72 74 208 \n dcd D.2.1.5.3 47 (35.1%) 58 (43.3%) 57 (43.2%) 162 (40.5%) \ncl D.1 \n Total number of patients with at least one adverse event related to study drug 50 (37.3%) 42 (31.3%) 51 (38.6%) 143 (35.8%) \n Total number of events related to study drug 61 51 71 183 \n dcd D.1.1.1.1 50 (37.3%) 42 (31.3%) 51 (38.6%) 143 (35.8%) \ncl B.1 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 49 (36.6%) 43 (32.6%) 139 (34.8%) \n Total number of events related to study drug 56 60 62 178 \n dcd B.1.1.1.1 47 (35.1%) 49 (36.6%) 43 (32.6%) 139 (34.8%) \ncl C.2 \n Total number of patients with at least one adverse event related to study drug 35 (26.1%) 48 (35.8%) 55 (41.7%) 138 (34.5%) \n Total number of events related to study drug 48 53 65 166 \n dcd C.2.1.2.1 35 (26.1%) 48 (35.8%) 55 (41.7%) 138 (34.5%) \ncl C.1 \n Total number of patients with at least one adverse event related to study drug 43 (32.1%) 46 (34.3%) 43 (32.6%) 132 (33.0%) \n Total number of events related to study drug 55 63 64 182 \n dcd C.1.1.1.3 43 (32.1%) 46 (34.3%) 43 (32.6%) 132 (33.0%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Overall total number of events related to study drug\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n indent_mod = 1L,\n label_pos = \"topleft\",\n split_label = obj_label(adae_f$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Total number of events related to study drug\"\n )\n ) %>%\n split_rows_by(\n \"AEHLT\",\n child_labels = \"visible\",\n nested = TRUE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae_f$AEHLT)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Total number of events related to study drug\"\n )\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae_f, c(\"AEDECOD\"), indent = 2L)\n\ntbl2 <- build_table(\n lyt = lyt,\n df = adae_f,\n alt_counts_df = adsl\n) %>%\n prune_table()\n\nresult <- tbl2 %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\n \n High Level Term A: Drug X B: Placebo C: Combination\n Dictionary-Derived Term (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event related to study drug 105 (78.4%) 108 (80.6%) 109 (82.6%) \nOverall total number of events related to study drug 282 299 336 \n cl D.2 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 58 (43.3%) 57 (43.2%) \n Total number of events related to study drug 62 72 74 \n hlt D.2.1.5 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 58 (43.3%) 57 (43.2%) \n Total number of events related to study drug 62 72 74 \n dcd D.2.1.5.3 47 (35.1%) 58 (43.3%) 57 (43.2%) \n cl D.1 \n Total number of patients with at least one adverse event related to study drug 50 (37.3%) 42 (31.3%) 51 (38.6%) \n Total number of events related to study drug 61 51 71 \n hlt D.1.1.1 \n Total number of patients with at least one adverse event related to study drug 50 (37.3%) 42 (31.3%) 51 (38.6%) \n Total number of events related to study drug 61 51 71 \n dcd D.1.1.1.1 50 (37.3%) 42 (31.3%) 51 (38.6%) \n cl B.1 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 49 (36.6%) 43 (32.6%) \n Total number of events related to study drug 56 60 62 \n hlt B.1.1.1 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 49 (36.6%) 43 (32.6%) \n Total number of events related to study drug 56 60 62 \n dcd B.1.1.1.1 47 (35.1%) 49 (36.6%) 43 (32.6%) \n cl C.2 \n Total number of patients with at least one adverse event related to study drug 35 (26.1%) 48 (35.8%) 55 (41.7%) \n Total number of events related to study drug 48 53 65 \n hlt C.2.1.2 \n Total number of patients with at least one adverse event related to study drug 35 (26.1%) 48 (35.8%) 55 (41.7%) \n Total number of events related to study drug 48 53 65 \n dcd C.2.1.2.1 35 (26.1%) 48 (35.8%) 55 (41.7%) \n cl C.1 \n Total number of patients with at least one adverse event related to study drug 43 (32.1%) 46 (34.3%) 43 (32.6%) \n Total number of events related to study drug 55 63 64 \n hlt C.1.1.1 \n Total number of patients with at least one adverse event related to study drug 43 (32.1%) 46 (34.3%) 43 (32.6%) \n Total number of events related to study drug 55 63 64 \n dcd C.1.1.1.3 43 (32.1%) 46 (34.3%) 43 (32.6%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadae <- df_explicit_na(adae)\n\nadae_labels <- var_labels(adae)\n\nadae_f <- adae %>%\n filter(AEREL == \"Y\")\n\nvar_labels(adae_f) <- adae_labels", + "text": "Output\n\n\nStandard Table\nTable Including High-Level Terms\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Overall total number of events related to study drug\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae_f$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Total number of events related to study drug\"\n )\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae_f, \"AEDECOD\", indent = 1L)\n\ntbl1 <- build_table(\n lyt = lyt,\n df = adae_f,\n alt_counts_df = adsl\n) %>%\n prune_table()\n\nresult <- tbl1 %>%\n prune_table() %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nBody System or Organ Class A: Drug X B: Placebo C: Combination All Patients\n Dictionary-Derived Term (N=134) (N=134) (N=132) (N=400) \n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event related to study drug 105 (78.4%) 108 (80.6%) 109 (82.6%) 322 (80.5%) \nOverall total number of events related to study drug 282 299 336 917 \ncl D.2 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 58 (43.3%) 57 (43.2%) 162 (40.5%) \n Total number of events related to study drug 62 72 74 208 \n dcd D.2.1.5.3 47 (35.1%) 58 (43.3%) 57 (43.2%) 162 (40.5%) \ncl D.1 \n Total number of patients with at least one adverse event related to study drug 50 (37.3%) 42 (31.3%) 51 (38.6%) 143 (35.8%) \n Total number of events related to study drug 61 51 71 183 \n dcd D.1.1.1.1 50 (37.3%) 42 (31.3%) 51 (38.6%) 143 (35.8%) \ncl B.1 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 49 (36.6%) 43 (32.6%) 139 (34.8%) \n Total number of events related to study drug 56 60 62 178 \n dcd B.1.1.1.1 47 (35.1%) 49 (36.6%) 43 (32.6%) 139 (34.8%) \ncl C.2 \n Total number of patients with at least one adverse event related to study drug 35 (26.1%) 48 (35.8%) 55 (41.7%) 138 (34.5%) \n Total number of events related to study drug 48 53 65 166 \n dcd C.2.1.2.1 35 (26.1%) 48 (35.8%) 55 (41.7%) 138 (34.5%) \ncl C.1 \n Total number of patients with at least one adverse event related to study drug 43 (32.1%) 46 (34.3%) 43 (32.6%) 132 (33.0%) \n Total number of events related to study drug 55 63 64 182 \n dcd C.1.1.1.3 43 (32.1%) 46 (34.3%) 43 (32.6%) 132 (33.0%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Overall total number of events related to study drug\"\n )\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n indent_mod = 1L,\n label_pos = \"topleft\",\n split_label = obj_label(adae_f$AEBODSYS)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Total number of events related to study drug\"\n )\n ) %>%\n split_rows_by(\n \"AEHLT\",\n child_labels = \"visible\",\n nested = TRUE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae_f$AEHLT)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one adverse event related to study drug\",\n nonunique = \"Total number of events related to study drug\"\n )\n ) %>%\n count_occurrences(\n vars = \"AEDECOD\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae_f, c(\"AEDECOD\"), indent = 2L)\n\ntbl2 <- build_table(\n lyt = lyt,\n df = adae_f,\n alt_counts_df = adsl\n) %>%\n prune_table()\n\nresult <- tbl2 %>%\n sort_at_path(\n path = c(\"AEBODSYS\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\"),\n scorefun = cont_n_allcols\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEHLT\", \"*\", \"AEDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nBody System or Organ Class \n High Level Term A: Drug X B: Placebo C: Combination\n Dictionary-Derived Term (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one adverse event related to study drug 105 (78.4%) 108 (80.6%) 109 (82.6%) \nOverall total number of events related to study drug 282 299 336 \n cl D.2 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 58 (43.3%) 57 (43.2%) \n Total number of events related to study drug 62 72 74 \n hlt D.2.1.5 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 58 (43.3%) 57 (43.2%) \n Total number of events related to study drug 62 72 74 \n dcd D.2.1.5.3 47 (35.1%) 58 (43.3%) 57 (43.2%) \n cl D.1 \n Total number of patients with at least one adverse event related to study drug 50 (37.3%) 42 (31.3%) 51 (38.6%) \n Total number of events related to study drug 61 51 71 \n hlt D.1.1.1 \n Total number of patients with at least one adverse event related to study drug 50 (37.3%) 42 (31.3%) 51 (38.6%) \n Total number of events related to study drug 61 51 71 \n dcd D.1.1.1.1 50 (37.3%) 42 (31.3%) 51 (38.6%) \n cl B.1 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 49 (36.6%) 43 (32.6%) \n Total number of events related to study drug 56 60 62 \n hlt B.1.1.1 \n Total number of patients with at least one adverse event related to study drug 47 (35.1%) 49 (36.6%) 43 (32.6%) \n Total number of events related to study drug 56 60 62 \n dcd B.1.1.1.1 47 (35.1%) 49 (36.6%) 43 (32.6%) \n cl C.2 \n Total number of patients with at least one adverse event related to study drug 35 (26.1%) 48 (35.8%) 55 (41.7%) \n Total number of events related to study drug 48 53 65 \n hlt C.2.1.2 \n Total number of patients with at least one adverse event related to study drug 35 (26.1%) 48 (35.8%) 55 (41.7%) \n Total number of events related to study drug 48 53 65 \n dcd C.2.1.2.1 35 (26.1%) 48 (35.8%) 55 (41.7%) \n cl C.1 \n Total number of patients with at least one adverse event related to study drug 43 (32.1%) 46 (34.3%) 43 (32.6%) \n Total number of events related to study drug 55 63 64 \n hlt C.1.1.1 \n Total number of patients with at least one adverse event related to study drug 43 (32.1%) 46 (34.3%) 43 (32.6%) \n Total number of events related to study drug 55 63 64 \n dcd C.1.1.1.3 43 (32.1%) 46 (34.3%) 43 (32.6%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadae <- df_explicit_na(adae)\n\nadae_labels <- var_labels(adae)\n\nadae_f <- adae %>%\n filter(AEREL == \"Y\")\n\nvar_labels(adae_f) <- adae_labels", "crumbs": [ "Tables", "Adverse Events", @@ -853,7 +853,7 @@ "href": "tables/adverse-events/aet09.html#reproducibility", "title": "AET09", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:05:17 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n 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2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9090 2024-11-27 [1] https://p~\n teal.code * 0.5.0.9019 2024-11-27 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-27 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-27 [1] https://p~\n teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:01:18 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz 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Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] 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2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.1 2024-11-27 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.2 2024-11-28 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9091 2024-11-30 [1] https://p~\n teal.code * 0.5.0.9020 2024-11-30 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-30 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-30 [1] https://p~\n teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Concomitant Medications", @@ -1081,7 +1081,7 @@ "href": "tables/safety/enrollment01.html#output", "title": "ENTXX", "section": "Output", - "text": "Output\n\n\nENT01 – Enrollment by Region, Country, and Investigator Number\nENT01A – Enrollment by Country and Investigator Number\nENT02 – Enrollment by Region, Country, and Investigator Number/Name\nENT02A – Enrollment by Country and Investigator Number/Name\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"REGION1\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$REGION1)) %>%\n summarize_row_groups() %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID\", 2L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\n \n Country A: Drug X B: Placebo C: Combination All Patients\n Investigator Identifier (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————\nAfrica 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n NGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 0 0 1 (9.1%) 1 (3.8%) \nAsia 91 (67.9%) 94 (70.1%) 83 (62.9%) 268 (67.0%) \n CHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \n PAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 0 0 1 (10%) 1 (3.2%) \n JPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 1 (20%) 0 0 1 (5.6%) \nEurasia 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n RUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 0 0 1 (16.7%) 1 (5.3%) \nEurope 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n GBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 0 1 (33.3%) 0 1 (11.1%) \nNorth America 13 (9.7%) 15 (11.2%) 20 (15.2%) 48 (12.0%) \n USA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 1 (10%) 0 0 1 (2.5%) \n CAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 0 0 1 (33.3%) 1 (12.5%) \nSouth America 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n BRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 0 0 1 (10%) 1 (3.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID\", 1L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\nCountry A: Drug X B: Placebo C: Combination All Patients\n Investigator Identifier (N=134) (N=134) (N=132) (N=400) \n———————————————————————————————————————————————————————————————————————————————————\nCHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \nUSA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 1 (10%) 0 0 1 (2.5%) \nBRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 0 0 1 (10%) 1 (3.3%) \nPAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 0 0 1 (10%) 1 (3.2%) \nNGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 0 0 1 (9.1%) 1 (3.8%) \nRUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 0 0 1 (16.7%) 1 (5.3%) \nJPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 1 (20%) 0 0 1 (5.6%) \nGBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 0 1 (33.3%) 0 1 (11.1%) \nCAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 0 0 1 (33.3%) 1 (12.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"REGION1\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$REGION1)) %>%\n summarize_row_groups() %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID_INVNAM\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID_INVNAM\", 2L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\n \n Country A: Drug X B: Placebo C: Combination All Patients\n Investigator Number/Name (N=134) (N=134) (N=132) (N=400) \n————————————————————————————————————————————————————————————————————————————————————————————\nAfrica 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n NGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 / Dr. NGA-1 Doe 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 / Dr. NGA-11 Doe 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 / Dr. NGA-12 Doe 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 / Dr. NGA-17 Doe 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 / Dr. NGA-2 Doe 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 / Dr. NGA-4 Doe 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 / Dr. NGA-5 Doe 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 / Dr. NGA-6 Doe 0 0 1 (9.1%) 1 (3.8%) \nAsia 91 (67.9%) 94 (70.1%) 83 (62.9%) 268 (67.0%) \n CHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 / Dr. CHN-1 Doe 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 / Dr. CHN-10 Doe 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 / Dr. CHN-11 Doe 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 / Dr. CHN-12 Doe 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 / Dr. CHN-13 Doe 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 / Dr. CHN-14 Doe 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 / Dr. CHN-15 Doe 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 / Dr. CHN-16 Doe 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 / Dr. CHN-17 Doe 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 / Dr. CHN-18 Doe 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 / Dr. CHN-2 Doe 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 / Dr. CHN-3 Doe 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 / Dr. CHN-4 Doe 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 / Dr. CHN-5 Doe 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 / Dr. CHN-6 Doe 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 / Dr. CHN-7 Doe 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 / Dr. CHN-8 Doe 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 / Dr. CHN-9 Doe 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \n PAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 / Dr. PAK-1 Doe 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 / Dr. PAK-11 Doe 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 / Dr. PAK-12 Doe 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 / Dr. PAK-13 Doe 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 / Dr. PAK-14 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 / Dr. PAK-15 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 / Dr. PAK-2 Doe 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 / Dr. PAK-4 Doe 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 / Dr. PAK-5 Doe 0 0 1 (10%) 1 (3.2%) \n JPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 / Dr. JPN-1 Doe 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 / Dr. JPN-11 Doe 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 / Dr. JPN-12 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 / Dr. JPN-14 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 / Dr. JPN-17 Doe 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 / Dr. JPN-18 Doe 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 / Dr. JPN-2 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 / Dr. JPN-3 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 / Dr. JPN-5 Doe 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 / Dr. JPN-6 Doe 1 (20%) 0 0 1 (5.6%) \nEurasia 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n RUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 / Dr. RUS-1 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 / Dr. RUS-11 Doe 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 / Dr. RUS-12 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 / Dr. RUS-13 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 / Dr. RUS-14 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 / Dr. RUS-16 Doe 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 / Dr. RUS-18 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 / Dr. RUS-2 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 / Dr. RUS-3 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 / Dr. RUS-4 Doe 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 / Dr. RUS-5 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 / Dr. RUS-6 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 / Dr. RUS-7 Doe 0 0 1 (16.7%) 1 (5.3%) \nEurope 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n GBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 / Dr. GBR-1 Doe 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 / Dr. GBR-11 Doe 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 / Dr. GBR-13 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 / Dr. GBR-15 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 / Dr. GBR-17 Doe 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 / Dr. GBR-6 Doe 0 1 (33.3%) 0 1 (11.1%) \nNorth America 13 (9.7%) 15 (11.2%) 20 (15.2%) 48 (12.0%) \n USA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 / Dr. USA-1 Doe 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 / Dr. USA-11 Doe 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 / Dr. USA-12 Doe 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 / Dr. USA-14 Doe 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 / Dr. USA-15 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 / Dr. USA-17 Doe 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 / Dr. USA-19 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 / Dr. USA-2 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 / Dr. USA-3 Doe 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 / Dr. USA-4 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 / Dr. USA-5 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 / Dr. USA-6 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 / Dr. USA-8 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 / Dr. USA-9 Doe 1 (10%) 0 0 1 (2.5%) \n CAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 / Dr. CAN-1 Doe 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 / Dr. CAN-11 Doe 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 / Dr. CAN-14 Doe 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 / Dr. CAN-4 Doe 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 / Dr. CAN-5 Doe 0 0 1 (33.3%) 1 (12.5%) \nSouth America 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n BRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 / Dr. BRA-1 Doe 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 / Dr. BRA-11 Doe 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 / Dr. BRA-12 Doe 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 / Dr. BRA-13 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 / Dr. BRA-14 Doe 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 / Dr. BRA-15 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 / Dr. BRA-2 Doe 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 / Dr. BRA-3 Doe 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 / Dr. BRA-4 Doe 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 / Dr. BRA-5 Doe 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 / Dr. BRA-6 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 / Dr. BRA-7 Doe 0 0 1 (10%) 1 (3.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID_INVNAM\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID_INVNAM\", 1L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\nCountry A: Drug X B: Placebo C: Combination All Patients\n Investigator Number/Name (N=134) (N=134) (N=132) (N=400) \n——————————————————————————————————————————————————————————————————————————————————————————\nCHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 / Dr. CHN-1 Doe 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 / Dr. CHN-10 Doe 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 / Dr. CHN-11 Doe 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 / Dr. CHN-12 Doe 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 / Dr. CHN-13 Doe 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 / Dr. CHN-14 Doe 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 / Dr. CHN-15 Doe 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 / Dr. CHN-16 Doe 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 / Dr. CHN-17 Doe 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 / Dr. CHN-18 Doe 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 / Dr. CHN-2 Doe 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 / Dr. CHN-3 Doe 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 / Dr. CHN-4 Doe 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 / Dr. CHN-5 Doe 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 / Dr. CHN-6 Doe 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 / Dr. CHN-7 Doe 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 / Dr. CHN-8 Doe 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 / Dr. CHN-9 Doe 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \nUSA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 / Dr. USA-1 Doe 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 / Dr. USA-11 Doe 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 / Dr. USA-12 Doe 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 / Dr. USA-14 Doe 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 / Dr. USA-15 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 / Dr. USA-17 Doe 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 / Dr. USA-19 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 / Dr. USA-2 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 / Dr. USA-3 Doe 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 / Dr. USA-4 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 / Dr. USA-5 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 / Dr. USA-6 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 / Dr. USA-8 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 / Dr. USA-9 Doe 1 (10%) 0 0 1 (2.5%) \nBRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 / Dr. BRA-1 Doe 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 / Dr. BRA-11 Doe 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 / Dr. BRA-12 Doe 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 / Dr. BRA-13 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 / Dr. BRA-14 Doe 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 / Dr. BRA-15 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 / Dr. BRA-2 Doe 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 / Dr. BRA-3 Doe 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 / Dr. BRA-4 Doe 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 / Dr. BRA-5 Doe 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 / Dr. BRA-6 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 / Dr. BRA-7 Doe 0 0 1 (10%) 1 (3.3%) \nPAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 / Dr. PAK-1 Doe 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 / Dr. PAK-11 Doe 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 / Dr. PAK-12 Doe 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 / Dr. PAK-13 Doe 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 / Dr. PAK-14 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 / Dr. PAK-15 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 / Dr. PAK-2 Doe 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 / Dr. PAK-4 Doe 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 / Dr. PAK-5 Doe 0 0 1 (10%) 1 (3.2%) \nNGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 / Dr. NGA-1 Doe 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 / Dr. NGA-11 Doe 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 / Dr. NGA-12 Doe 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 / Dr. NGA-17 Doe 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 / Dr. NGA-2 Doe 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 / Dr. NGA-4 Doe 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 / Dr. NGA-5 Doe 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 / Dr. NGA-6 Doe 0 0 1 (9.1%) 1 (3.8%) \nRUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 / Dr. RUS-1 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 / Dr. RUS-11 Doe 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 / Dr. RUS-12 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 / Dr. RUS-13 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 / Dr. RUS-14 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 / Dr. RUS-16 Doe 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 / Dr. RUS-18 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 / Dr. RUS-2 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 / Dr. RUS-3 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 / Dr. RUS-4 Doe 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 / Dr. RUS-5 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 / Dr. RUS-6 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 / Dr. RUS-7 Doe 0 0 1 (16.7%) 1 (5.3%) \nJPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 / Dr. JPN-1 Doe 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 / Dr. JPN-11 Doe 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 / Dr. JPN-12 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 / Dr. JPN-14 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 / Dr. JPN-17 Doe 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 / Dr. JPN-18 Doe 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 / Dr. JPN-2 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 / Dr. JPN-3 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 / Dr. JPN-5 Doe 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 / Dr. JPN-6 Doe 1 (20%) 0 0 1 (5.6%) \nGBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 / Dr. GBR-1 Doe 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 / Dr. GBR-11 Doe 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 / Dr. GBR-13 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 / Dr. GBR-15 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 / Dr. GBR-17 Doe 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 / Dr. GBR-6 Doe 0 1 (33.3%) 0 1 (11.1%) \nCAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 / Dr. CAN-1 Doe 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 / Dr. CAN-11 Doe 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 / Dr. CAN-14 Doe 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 / Dr. CAN-4 Doe 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 / Dr. CAN-5 Doe 0 0 1 (33.3%) 1 (12.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(forcats)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\n\nadsl <- adsl %>%\n mutate(\n REGION1 = droplevels(REGION1),\n COUNTRY = droplevels(COUNTRY),\n INVID_INVNAM = paste(INVID, INVNAM, sep = \" / \")\n ) %>%\n mutate(\n INVID = factor(INVID),\n SITEID = factor(SITEID),\n INVNAM = factor(INVNAM),\n INVID_INVNAM = factor(INVID_INVNAM)\n ) %>%\n var_relabel(\n INVID_INVNAM = \"Investigator Number/Name\",\n REGION1 = \"Geographic Region 1\",\n COUNTRY = \"Country\",\n INVID = \"Investigator Identifier\"\n ) %>%\n arrange(REGION1, COUNTRY, INVID)", + "text": "Output\n\n\nENT01 – Enrollment by Region, Country, and Investigator Number\nENT01A – Enrollment by Country and Investigator Number\nENT02 – Enrollment by Region, Country, and Investigator Number/Name\nENT02A – Enrollment by Country and Investigator Number/Name\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"REGION1\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$REGION1)) %>%\n summarize_row_groups() %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID\", 2L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\nGeographic Region 1 \n Country A: Drug X B: Placebo C: Combination All Patients\n Investigator Identifier (N=134) (N=134) (N=132) (N=400) \n—————————————————————————————————————————————————————————————————————————————————————\nAfrica 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n NGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 0 0 1 (9.1%) 1 (3.8%) \nAsia 91 (67.9%) 94 (70.1%) 83 (62.9%) 268 (67.0%) \n CHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \n PAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 0 0 1 (10%) 1 (3.2%) \n JPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 1 (20%) 0 0 1 (5.6%) \nEurasia 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n RUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 0 0 1 (16.7%) 1 (5.3%) \nEurope 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n GBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 0 1 (33.3%) 0 1 (11.1%) \nNorth America 13 (9.7%) 15 (11.2%) 20 (15.2%) 48 (12.0%) \n USA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 1 (10%) 0 0 1 (2.5%) \n CAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 0 0 1 (33.3%) 1 (12.5%) \nSouth America 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n BRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 0 0 1 (10%) 1 (3.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID\", 1L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\nCountry A: Drug X B: Placebo C: Combination All Patients\n Investigator Identifier (N=134) (N=134) (N=132) (N=400) \n———————————————————————————————————————————————————————————————————————————————————\nCHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \nUSA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 1 (10%) 0 0 1 (2.5%) \nBRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 0 0 1 (10%) 1 (3.3%) \nPAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 0 0 1 (10%) 1 (3.2%) \nNGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 0 0 1 (9.1%) 1 (3.8%) \nRUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 0 0 1 (16.7%) 1 (5.3%) \nJPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 1 (20%) 0 0 1 (5.6%) \nGBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 0 1 (33.3%) 0 1 (11.1%) \nCAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 0 0 1 (33.3%) 1 (12.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"REGION1\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$REGION1)) %>%\n summarize_row_groups() %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID_INVNAM\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID_INVNAM\", 2L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\nGeographic Region 1 \n Country A: Drug X B: Placebo C: Combination All Patients\n Investigator Number/Name (N=134) (N=134) (N=132) (N=400) \n————————————————————————————————————————————————————————————————————————————————————————————\nAfrica 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n NGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 / Dr. NGA-1 Doe 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 / Dr. NGA-11 Doe 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 / Dr. NGA-12 Doe 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 / Dr. NGA-17 Doe 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 / Dr. NGA-2 Doe 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 / Dr. NGA-4 Doe 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 / Dr. NGA-5 Doe 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 / Dr. NGA-6 Doe 0 0 1 (9.1%) 1 (3.8%) \nAsia 91 (67.9%) 94 (70.1%) 83 (62.9%) 268 (67.0%) \n CHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 / Dr. CHN-1 Doe 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 / Dr. CHN-10 Doe 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 / Dr. CHN-11 Doe 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 / Dr. CHN-12 Doe 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 / Dr. CHN-13 Doe 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 / Dr. CHN-14 Doe 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 / Dr. CHN-15 Doe 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 / Dr. CHN-16 Doe 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 / Dr. CHN-17 Doe 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 / Dr. CHN-18 Doe 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 / Dr. CHN-2 Doe 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 / Dr. CHN-3 Doe 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 / Dr. CHN-4 Doe 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 / Dr. CHN-5 Doe 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 / Dr. CHN-6 Doe 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 / Dr. CHN-7 Doe 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 / Dr. CHN-8 Doe 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 / Dr. CHN-9 Doe 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \n PAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 / Dr. PAK-1 Doe 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 / Dr. PAK-11 Doe 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 / Dr. PAK-12 Doe 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 / Dr. PAK-13 Doe 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 / Dr. PAK-14 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 / Dr. PAK-15 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 / Dr. PAK-2 Doe 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 / Dr. PAK-4 Doe 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 / Dr. PAK-5 Doe 0 0 1 (10%) 1 (3.2%) \n JPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 / Dr. JPN-1 Doe 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 / Dr. JPN-11 Doe 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 / Dr. JPN-12 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 / Dr. JPN-14 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 / Dr. JPN-17 Doe 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 / Dr. JPN-18 Doe 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 / Dr. JPN-2 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 / Dr. JPN-3 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 / Dr. JPN-5 Doe 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 / Dr. JPN-6 Doe 1 (20%) 0 0 1 (5.6%) \nEurasia 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n RUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 / Dr. RUS-1 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 / Dr. RUS-11 Doe 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 / Dr. RUS-12 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 / Dr. RUS-13 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 / Dr. RUS-14 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 / Dr. RUS-16 Doe 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 / Dr. RUS-18 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 / Dr. RUS-2 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 / Dr. RUS-3 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 / Dr. RUS-4 Doe 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 / Dr. RUS-5 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 / Dr. RUS-6 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 / Dr. RUS-7 Doe 0 0 1 (16.7%) 1 (5.3%) \nEurope 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n GBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 / Dr. GBR-1 Doe 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 / Dr. GBR-11 Doe 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 / Dr. GBR-13 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 / Dr. GBR-15 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 / Dr. GBR-17 Doe 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 / Dr. GBR-6 Doe 0 1 (33.3%) 0 1 (11.1%) \nNorth America 13 (9.7%) 15 (11.2%) 20 (15.2%) 48 (12.0%) \n USA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 / Dr. USA-1 Doe 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 / Dr. USA-11 Doe 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 / Dr. USA-12 Doe 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 / Dr. USA-14 Doe 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 / Dr. USA-15 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 / Dr. USA-17 Doe 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 / Dr. USA-19 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 / Dr. USA-2 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 / Dr. USA-3 Doe 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 / Dr. USA-4 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 / Dr. USA-5 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 / Dr. USA-6 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 / Dr. USA-8 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 / Dr. USA-9 Doe 1 (10%) 0 0 1 (2.5%) \n CAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 / Dr. CAN-1 Doe 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 / Dr. CAN-11 Doe 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 / Dr. CAN-14 Doe 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 / Dr. CAN-4 Doe 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 / Dr. CAN-5 Doe 0 0 1 (33.3%) 1 (12.5%) \nSouth America 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n BRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 / Dr. BRA-1 Doe 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 / Dr. BRA-11 Doe 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 / Dr. BRA-12 Doe 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 / Dr. BRA-13 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 / Dr. BRA-14 Doe 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 / Dr. BRA-15 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 / Dr. BRA-2 Doe 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 / Dr. BRA-3 Doe 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 / Dr. BRA-4 Doe 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 / Dr. BRA-5 Doe 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 / Dr. BRA-6 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 / Dr. BRA-7 Doe 0 0 1 (10%) 1 (3.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n add_overall_col(label = \"All Patients\") %>%\n split_rows_by(\"COUNTRY\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adsl$COUNTRY)) %>%\n summarize_row_groups() %>%\n analyze_vars(\"INVID_INVNAM\", .stats = \"count_fraction\") %>%\n append_varlabels(adsl, \"INVID_INVNAM\", 1L)\n\nresult <- build_table(lyt, adsl) %>%\n prune_table()\n\nresult\n\nCountry A: Drug X B: Placebo C: Combination All Patients\n Investigator Number/Name (N=134) (N=134) (N=132) (N=400) \n——————————————————————————————————————————————————————————————————————————————————————————\nCHN 74 (55.2%) 81 (60.4%) 64 (48.5%) 219 (54.8%) \n INV ID CHN-1 / Dr. CHN-1 Doe 21 (28.4%) 20 (24.7%) 16 (25%) 57 (26%) \n INV ID CHN-10 / Dr. CHN-10 Doe 0 1 (1.2%) 0 1 (0.5%) \n INV ID CHN-11 / Dr. CHN-11 Doe 12 (16.2%) 20 (24.7%) 16 (25%) 48 (21.9%) \n INV ID CHN-12 / Dr. CHN-12 Doe 4 (5.4%) 3 (3.7%) 1 (1.6%) 8 (3.7%) \n INV ID CHN-13 / Dr. CHN-13 Doe 2 (2.7%) 6 (7.4%) 0 8 (3.7%) \n INV ID CHN-14 / Dr. CHN-14 Doe 4 (5.4%) 2 (2.5%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-15 / Dr. CHN-15 Doe 2 (2.7%) 0 4 (6.2%) 6 (2.7%) \n INV ID CHN-16 / Dr. CHN-16 Doe 0 3 (3.7%) 3 (4.7%) 6 (2.7%) \n INV ID CHN-17 / Dr. CHN-17 Doe 4 (5.4%) 4 (4.9%) 3 (4.7%) 11 (5%) \n INV ID CHN-18 / Dr. CHN-18 Doe 1 (1.4%) 0 2 (3.1%) 3 (1.4%) \n INV ID CHN-2 / Dr. CHN-2 Doe 9 (12.2%) 4 (4.9%) 3 (4.7%) 16 (7.3%) \n INV ID CHN-3 / Dr. CHN-3 Doe 5 (6.8%) 1 (1.2%) 5 (7.8%) 11 (5%) \n INV ID CHN-4 / Dr. CHN-4 Doe 3 (4.1%) 3 (3.7%) 3 (4.7%) 9 (4.1%) \n INV ID CHN-5 / Dr. CHN-5 Doe 4 (5.4%) 3 (3.7%) 4 (6.2%) 11 (5%) \n INV ID CHN-6 / Dr. CHN-6 Doe 1 (1.4%) 3 (3.7%) 0 4 (1.8%) \n INV ID CHN-7 / Dr. CHN-7 Doe 0 5 (6.2%) 1 (1.6%) 6 (2.7%) \n INV ID CHN-8 / Dr. CHN-8 Doe 1 (1.4%) 1 (1.2%) 0 2 (0.9%) \n INV ID CHN-9 / Dr. CHN-9 Doe 1 (1.4%) 2 (2.5%) 0 3 (1.4%) \nUSA 10 (7.5%) 13 (9.7%) 17 (12.9%) 40 (10.0%) \n INV ID USA-1 / Dr. USA-1 Doe 1 (10%) 4 (30.8%) 5 (29.4%) 10 (25%) \n INV ID USA-11 / Dr. USA-11 Doe 4 (40%) 2 (15.4%) 3 (17.6%) 9 (22.5%) \n INV ID USA-12 / Dr. USA-12 Doe 1 (10%) 2 (15.4%) 3 (17.6%) 6 (15%) \n INV ID USA-14 / Dr. USA-14 Doe 1 (10%) 0 0 1 (2.5%) \n INV ID USA-15 / Dr. USA-15 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-17 / Dr. USA-17 Doe 1 (10%) 1 (7.7%) 0 2 (5%) \n INV ID USA-19 / Dr. USA-19 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-2 / Dr. USA-2 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-3 / Dr. USA-3 Doe 1 (10%) 0 1 (5.9%) 2 (5%) \n INV ID USA-4 / Dr. USA-4 Doe 0 1 (7.7%) 1 (5.9%) 2 (5%) \n INV ID USA-5 / Dr. USA-5 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-6 / Dr. USA-6 Doe 0 1 (7.7%) 0 1 (2.5%) \n INV ID USA-8 / Dr. USA-8 Doe 0 0 1 (5.9%) 1 (2.5%) \n INV ID USA-9 / Dr. USA-9 Doe 1 (10%) 0 0 1 (2.5%) \nBRA 13 (9.7%) 7 (5.2%) 10 (7.6%) 30 (7.5%) \n INV ID BRA-1 / Dr. BRA-1 Doe 4 (30.8%) 2 (28.6%) 2 (20%) 8 (26.7%) \n INV ID BRA-11 / Dr. BRA-11 Doe 4 (30.8%) 0 4 (40%) 8 (26.7%) \n INV ID BRA-12 / Dr. BRA-12 Doe 0 1 (14.3%) 0 1 (3.3%) \n INV ID BRA-13 / Dr. BRA-13 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-14 / Dr. BRA-14 Doe 1 (7.7%) 0 1 (10%) 2 (6.7%) \n INV ID BRA-15 / Dr. BRA-15 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-2 / Dr. BRA-2 Doe 1 (7.7%) 1 (14.3%) 0 2 (6.7%) \n INV ID BRA-3 / Dr. BRA-3 Doe 0 2 (28.6%) 0 2 (6.7%) \n INV ID BRA-4 / Dr. BRA-4 Doe 0 1 (14.3%) 1 (10%) 2 (6.7%) \n INV ID BRA-5 / Dr. BRA-5 Doe 0 0 1 (10%) 1 (3.3%) \n INV ID BRA-6 / Dr. BRA-6 Doe 1 (7.7%) 0 0 1 (3.3%) \n INV ID BRA-7 / Dr. BRA-7 Doe 0 0 1 (10%) 1 (3.3%) \nPAK 12 (9.0%) 9 (6.7%) 10 (7.6%) 31 (7.8%) \n INV ID PAK-1 / Dr. PAK-1 Doe 2 (16.7%) 4 (44.4%) 4 (40%) 10 (32.3%) \n INV ID PAK-11 / Dr. PAK-11 Doe 4 (33.3%) 3 (33.3%) 2 (20%) 9 (29%) \n INV ID PAK-12 / Dr. PAK-12 Doe 2 (16.7%) 0 0 2 (6.5%) \n INV ID PAK-13 / Dr. PAK-13 Doe 1 (8.3%) 1 (11.1%) 0 2 (6.5%) \n INV ID PAK-14 / Dr. PAK-14 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-15 / Dr. PAK-15 Doe 1 (8.3%) 0 0 1 (3.2%) \n INV ID PAK-2 / Dr. PAK-2 Doe 1 (8.3%) 0 2 (20%) 3 (9.7%) \n INV ID PAK-4 / Dr. PAK-4 Doe 0 1 (11.1%) 1 (10%) 2 (6.5%) \n INV ID PAK-5 / Dr. PAK-5 Doe 0 0 1 (10%) 1 (3.2%) \nNGA 8 (6.0%) 7 (5.2%) 11 (8.3%) 26 (6.5%) \n INV ID NGA-1 / Dr. NGA-1 Doe 3 (37.5%) 3 (42.9%) 4 (36.4%) 10 (38.5%) \n INV ID NGA-11 / Dr. NGA-11 Doe 1 (12.5%) 2 (28.6%) 3 (27.3%) 6 (23.1%) \n INV ID NGA-12 / Dr. NGA-12 Doe 0 1 (14.3%) 1 (9.1%) 2 (7.7%) \n INV ID NGA-17 / Dr. NGA-17 Doe 2 (25%) 0 0 2 (7.7%) \n INV ID NGA-2 / Dr. NGA-2 Doe 1 (12.5%) 1 (14.3%) 0 2 (7.7%) \n INV ID NGA-4 / Dr. NGA-4 Doe 1 (12.5%) 0 1 (9.1%) 2 (7.7%) \n INV ID NGA-5 / Dr. NGA-5 Doe 0 0 1 (9.1%) 1 (3.8%) \n INV ID NGA-6 / Dr. NGA-6 Doe 0 0 1 (9.1%) 1 (3.8%) \nRUS 5 (3.7%) 8 (6.0%) 6 (4.5%) 19 (4.8%) \n INV ID RUS-1 / Dr. RUS-1 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-11 / Dr. RUS-11 Doe 0 2 (25%) 2 (33.3%) 4 (21.1%) \n INV ID RUS-12 / Dr. RUS-12 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-13 / Dr. RUS-13 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-14 / Dr. RUS-14 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-16 / Dr. RUS-16 Doe 1 (20%) 1 (12.5%) 0 2 (10.5%) \n INV ID RUS-18 / Dr. RUS-18 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-2 / Dr. RUS-2 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-3 / Dr. RUS-3 Doe 0 0 1 (16.7%) 1 (5.3%) \n INV ID RUS-4 / Dr. RUS-4 Doe 0 2 (25%) 1 (16.7%) 3 (15.8%) \n INV ID RUS-5 / Dr. RUS-5 Doe 0 1 (12.5%) 0 1 (5.3%) \n INV ID RUS-6 / Dr. RUS-6 Doe 1 (20%) 0 0 1 (5.3%) \n INV ID RUS-7 / Dr. RUS-7 Doe 0 0 1 (16.7%) 1 (5.3%) \nJPN 5 (3.7%) 4 (3.0%) 9 (6.8%) 18 (4.5%) \n INV ID JPN-1 / Dr. JPN-1 Doe 2 (40%) 2 (50%) 1 (11.1%) 5 (27.8%) \n INV ID JPN-11 / Dr. JPN-11 Doe 0 0 3 (33.3%) 3 (16.7%) \n INV ID JPN-12 / Dr. JPN-12 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-14 / Dr. JPN-14 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-17 / Dr. JPN-17 Doe 0 0 2 (22.2%) 2 (11.1%) \n INV ID JPN-18 / Dr. JPN-18 Doe 1 (20%) 0 0 1 (5.6%) \n INV ID JPN-2 / Dr. JPN-2 Doe 0 0 1 (11.1%) 1 (5.6%) \n INV ID JPN-3 / Dr. JPN-3 Doe 0 1 (25%) 0 1 (5.6%) \n INV ID JPN-5 / Dr. JPN-5 Doe 1 (20%) 0 1 (11.1%) 2 (11.1%) \n INV ID JPN-6 / Dr. JPN-6 Doe 1 (20%) 0 0 1 (5.6%) \nGBR 4 (3.0%) 3 (2.2%) 2 (1.5%) 9 (2.2%) \n INV ID GBR-1 / Dr. GBR-1 Doe 2 (50%) 0 1 (50%) 3 (33.3%) \n INV ID GBR-11 / Dr. GBR-11 Doe 0 1 (33.3%) 1 (50%) 2 (22.2%) \n INV ID GBR-13 / Dr. GBR-13 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-15 / Dr. GBR-15 Doe 1 (25%) 0 0 1 (11.1%) \n INV ID GBR-17 / Dr. GBR-17 Doe 0 1 (33.3%) 0 1 (11.1%) \n INV ID GBR-6 / Dr. GBR-6 Doe 0 1 (33.3%) 0 1 (11.1%) \nCAN 3 (2.2%) 2 (1.5%) 3 (2.3%) 8 (2.0%) \n INV ID CAN-1 / Dr. CAN-1 Doe 1 (33.3%) 1 (50%) 0 2 (25%) \n INV ID CAN-11 / Dr. CAN-11 Doe 1 (33.3%) 0 1 (33.3%) 2 (25%) \n INV ID CAN-14 / Dr. CAN-14 Doe 1 (33.3%) 0 0 1 (12.5%) \n INV ID CAN-4 / Dr. CAN-4 Doe 0 1 (50%) 1 (33.3%) 2 (25%) \n INV ID CAN-5 / Dr. CAN-5 Doe 0 0 1 (33.3%) 1 (12.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(forcats)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\n\nadsl <- adsl %>%\n mutate(\n REGION1 = droplevels(REGION1),\n COUNTRY = droplevels(COUNTRY),\n INVID_INVNAM = paste(INVID, INVNAM, sep = \" / \")\n ) %>%\n mutate(\n INVID = factor(INVID),\n SITEID = factor(SITEID),\n INVNAM = factor(INVNAM),\n INVID_INVNAM = factor(INVID_INVNAM)\n ) %>%\n var_relabel(\n INVID_INVNAM = \"Investigator Number/Name\",\n REGION1 = \"Geographic Region 1\",\n COUNTRY = \"Country\",\n INVID = \"Investigator Identifier\"\n ) %>%\n arrange(REGION1, COUNTRY, INVID)", "crumbs": [ "Tables", "Safety", @@ -1105,7 +1105,7 @@ "href": "tables/safety/enrollment01.html#reproducibility", "title": "ENTXX", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:59:42 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats * 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.0 2024-11-26 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.1 2024-11-26 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9090 2024-11-27 [1] https://p~\n teal.code * 0.5.0.9019 2024-11-27 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-27 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-27 [1] https://p~\n teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:55:44 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats * 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.1 2024-11-27 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 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RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:53:55 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype 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RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -1201,7 +1201,7 @@ "href": "tables/lab-results/lbt13.html#output", "title": "LBT13", "section": "Output", - "text": "Output\n\n\nStandard Table (Low)\nStandard Table (High)\nTable Without Patients with Missing Baseline (Low)\nTable with Missing Baseline Considered as Grade 0 (High)\nTable with Fill-In of Grades (High)\nData Setup\n\n\n\nNote that the worst laboratory flag (below WGRLOVFL) must be selected appropriately to match the direction of abnormality (here Low). New grouping variables ATOXGR_GP and BTOXGR_GP are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRLOVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\n \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not Low (n) 116 110 101 \n Not Low 103 (88.8%) 91 (82.7%) 88 (87.1%) \n 1 3 (2.6%) 5 (4.5%) 6 (5.9%) \n 2 4 (3.4%) 9 (8.2%) 2 (2.0%) \n 3 3 (2.6%) 4 (3.6%) 4 (4.0%) \n 4 3 (2.6%) 1 (0.9%) 1 (1.0%) \n 1 (n) 4 7 5 \n Not Low 3 (75.0%) 7 (100%) 4 (80.0%) \n 3 1 (25.0%) 0 1 (20.0%) \n 2 (n) 5 6 11 \n Not Low 5 (100%) 5 (83.3%) 8 (72.7%) \n 1 0 0 1 (9.1%) \n 3 0 0 2 (18.2%) \n 4 0 1 (16.7%) 0 \n 3 (n) 6 8 5 \n Not Low 6 (100%) 7 (87.5%) 5 (100%) \n 3 0 1 (12.5%) 0 \n 4 (n) 3 3 10 \n Not Low 2 (66.7%) 3 (100%) 7 (70.0%) \n 1 0 0 2 (20.0%) \n 2 1 (33.3%) 0 0 \n 4 0 0 1 (10.0%) \n WEEK 2 DAY 15 \n Not Low (n) 106 111 116 \n Not Low 93 (87.7%) 93 (83.8%) 100 (86.2%) \n 1 3 (2.8%) 4 (3.6%) 8 (6.9%) \n 2 5 (4.7%) 7 (6.3%) 2 (1.7%) \n 3 2 (1.9%) 5 (4.5%) 6 (5.2%) \n 4 3 (2.8%) 2 (1.8%) 0 \n 1 (n) 15 9 2 \n Not Low 13 (86.7%) 8 (88.9%) 1 (50.0%) \n 2 0 1 (11.1%) 0 \n 3 2 (13.3%) 0 0 \n 4 0 0 1 (50.0%) \n 2 (n) 3 3 6 \n Not Low 3 (100%) 3 (100%) 4 (66.7%) \n 1 0 0 1 (16.7%) \n 3 0 0 1 (16.7%) \n 3 (n) 7 7 6 \n Not Low 7 (100%) 6 (85.7%) 5 (83.3%) \n 2 0 1 (14.3%) 0 \n 4 0 0 1 (16.7%) \n 4 (n) 3 4 2 \n Not Low 3 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n WEEK 3 DAY 22 \n Not Low (n) 119 110 114 \n Not Low 104 (87.4%) 92 (83.6%) 94 (82.5%) \n 1 3 (2.5%) 4 (3.6%) 9 (7.9%) \n 2 5 (4.2%) 7 (6.4%) 2 (1.8%) \n 3 4 (3.4%) 5 (4.5%) 7 (6.1%) \n 4 3 (2.5%) 2 (1.8%) 2 (1.8%) \n 1 (n) 9 9 6 \n Not Low 9 (100%) 7 (77.8%) 6 (100%) \n 2 0 2 (22.2%) 0 \n 2 (n) 1 7 3 \n Not Low 1 (100%) 6 (85.7%) 3 (100%) \n 1 0 1 (14.3%) 0 \n 3 (n) 4 5 4 \n Not Low 4 (100%) 5 (100%) 4 (100%) \n 4 (n) 1 3 5 \n Not Low 1 (100%) 3 (100%) 5 (100%) \n WEEK 4 DAY 29 \n Not Low (n) 101 119 111 \n Not Low 89 (88.1%) 100 (84.0%) 96 (86.5%) \n 1 3 (3.0%) 4 (3.4%) 6 (5.4%) \n 2 4 (4.0%) 8 (6.7%) 1 (0.9%) \n 3 2 (2.0%) 5 (4.2%) 6 (5.4%) \n 4 3 (3.0%) 2 (1.7%) 2 (1.8%) \n 1 (n) 10 5 6 \n Not Low 9 (90.0%) 5 (100%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 1 (10.0%) 0 0 \n 2 (n) 13 4 6 \n Not Low 13 (100%) 3 (75.0%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 0 1 (25.0%) 0 \n 3 (n) 8 2 6 \n Not Low 6 (75.0%) 1 (50.0%) 5 (83.3%) \n 1 0 1 (50.0%) 0 \n 2 0 0 1 (16.7%) \n 3 2 (25.0%) 0 0 \n 4 (n) 2 4 3 \n Not Low 2 (100%) 4 (100%) 1 (33.3%) \n 1 0 0 1 (33.3%) \n 3 0 0 1 (33.3%) \n WEEK 5 DAY 36 \n Not Low (n) 115 112 111 \n Not Low 102 (88.7%) 94 (83.9%) 96 (86.5%) \n 1 2 (1.7%) 4 (3.6%) 6 (5.4%) \n 2 5 (4.3%) 7 (6.2%) 2 (1.8%) \n 3 3 (2.6%) 5 (4.5%) 5 (4.5%) \n 4 3 (2.6%) 2 (1.8%) 2 (1.8%) \n 1 (n) 5 7 6 \n Not Low 5 (100%) 4 (57.1%) 5 (83.3%) \n 1 0 1 (14.3%) 1 (16.7%) \n 2 0 2 (28.6%) 0 \n 2 (n) 5 11 6 \n Not Low 5 (100%) 11 (100%) 6 (100%) \n 3 (n) 8 2 7 \n Not Low 6 (75.0%) 2 (100%) 4 (57.1%) \n 1 1 (12.5%) 0 1 (14.3%) \n 3 1 (12.5%) 0 2 (28.6%) \n 4 (n) 1 2 2 \n Not Low 1 (100%) 2 (100%) 1 (50.0%) \n 1 0 0 1 (50.0%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that the worst laboratory flag (below WGRHIVFL) must be selected appropriately to match the direction of abnormality (here High). New grouping variables ATOXGR_GP and BTOXGR_GP are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRHIVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\n \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not High (n) 111 110 112 \n Not High 93 (83.8%) 92 (83.6%) 98 (87.5%) \n 1 8 (7.2%) 7 (6.4%) 5 (4.5%) \n 2 2 (1.8%) 6 (5.5%) 7 (6.2%) \n 3 6 (5.4%) 3 (2.7%) 2 (1.8%) \n 4 2 (1.8%) 2 (1.8%) 0 \n 1 (n) 8 11 6 \n Not High 7 (87.5%) 11 (100%) 5 (83.3%) \n 3 1 (12.5%) 0 1 (16.7%) \n 2 (n) 6 4 5 \n Not High 6 (100%) 1 (25.0%) 4 (80.0%) \n 1 0 3 (75.0%) 1 (20.0%) \n 3 (n) 8 3 4 \n Not High 7 (87.5%) 3 (100%) 4 (100%) \n 4 1 (12.5%) 0 0 \n 4 (n) 1 6 5 \n Not High 1 (100%) 5 (83.3%) 4 (80.0%) \n 1 0 0 1 (20.0%) \n 3 0 1 (16.7%) 0 \n WEEK 2 DAY 15 \n Not High (n) 117 113 113 \n Not High 99 (84.6%) 95 (84.1%) 100 (88.5%) \n 1 7 (6.0%) 6 (5.3%) 4 (3.5%) \n 2 2 (1.7%) 6 (5.3%) 6 (5.3%) \n 3 6 (5.1%) 4 (3.5%) 3 (2.7%) \n 4 3 (2.6%) 2 (1.8%) 0 \n 1 (n) 6 9 7 \n Not High 5 (83.3%) 8 (88.9%) 6 (85.7%) \n 1 0 1 (11.1%) 0 \n 2 0 0 1 (14.3%) \n 3 1 (16.7%) 0 0 \n 2 (n) 4 4 6 \n Not High 4 (100%) 4 (100%) 3 (50.0%) \n 1 0 0 3 (50.0%) \n 3 (n) 5 3 5 \n Not High 4 (80.0%) 2 (66.7%) 5 (100%) \n 1 1 (20.0%) 1 (33.3%) 0 \n 4 (n) 2 5 1 \n Not High 2 (100%) 3 (60.0%) 1 (100%) \n 1 0 2 (40.0%) 0 \n WEEK 3 DAY 22 \n Not High (n) 110 111 114 \n Not High 92 (83.6%) 94 (84.7%) 98 (86.0%) \n 1 8 (7.3%) 9 (8.1%) 7 (6.1%) \n 2 2 (1.8%) 5 (4.5%) 6 (5.3%) \n 3 5 (4.5%) 2 (1.8%) 3 (2.6%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 7 8 7 \n Not High 7 (100%) 5 (62.5%) 6 (85.7%) \n 1 0 1 (12.5%) 0 \n 2 0 1 (12.5%) 1 (14.3%) \n 3 0 1 (12.5%) 0 \n 2 (n) 9 7 5 \n Not High 9 (100%) 6 (85.7%) 5 (100%) \n 3 0 1 (14.3%) 0 \n 3 (n) 6 3 4 \n Not High 5 (83.3%) 2 (66.7%) 4 (100%) \n 3 1 (16.7%) 0 0 \n 4 0 1 (33.3%) 0 \n 4 (n) 2 5 2 \n Not High 1 (50.0%) 5 (100%) 2 (100%) \n 3 1 (50.0%) 0 0 \n WEEK 4 DAY 29 \n Not High (n) 115 117 113 \n Not High 97 (84.3%) 101 (86.3%) 99 (87.6%) \n 1 8 (7.0%) 7 (6.0%) 6 (5.3%) \n 2 2 (1.7%) 6 (5.1%) 5 (4.4%) \n 3 7 (6.1%) 3 (2.6%) 3 (2.7%) \n 4 1 (0.9%) 0 0 \n 1 (n) 4 3 11 \n Not High 4 (100%) 2 (66.7%) 10 (90.9%) \n 2 0 0 1 (9.1%) \n 4 0 1 (33.3%) 0 \n 2 (n) 6 4 2 \n Not High 6 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n 3 (n) 6 7 4 \n Not High 5 (83.3%) 4 (57.1%) 4 (100%) \n 1 0 1 (14.3%) 0 \n 3 0 1 (14.3%) 0 \n 4 1 (16.7%) 1 (14.3%) 0 \n 4 (n) 3 3 2 \n Not High 2 (66.7%) 2 (66.7%) 0 \n 1 0 1 (33.3%) 1 (50.0%) \n 2 0 0 1 (50.0%) \n 4 1 (33.3%) 0 0 \n WEEK 5 DAY 36 \n Not High (n) 111 111 119 \n Not High 95 (85.6%) 95 (85.6%) 104 (87.4%) \n 1 6 (5.4%) 8 (7.2%) 6 (5.0%) \n 2 1 (0.9%) 5 (4.5%) 6 (5.0%) \n 3 6 (5.4%) 2 (1.8%) 3 (2.5%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 8 11 5 \n Not High 7 (87.5%) 9 (81.8%) 4 (80.0%) \n 1 0 1 (9.1%) 0 \n 2 0 0 1 (20.0%) \n 3 1 (12.5%) 1 (9.1%) 0 \n 2 (n) 7 6 3 \n Not High 5 (71.4%) 3 (50.0%) 2 (66.7%) \n 1 1 (14.3%) 1 (16.7%) 1 (33.3%) \n 2 1 (14.3%) 1 (16.7%) 0 \n 4 0 1 (16.7%) 0 \n 3 (n) 3 3 4 \n Not High 3 (100%) 3 (100%) 4 (100%) \n 4 (n) 5 3 1 \n Not High 4 (80.0%) 2 (66.7%) 1 (100%) \n 1 1 (20.0%) 0 0 \n 3 0 1 (33.3%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that missing baseline values are filtered out in the pre-processing step.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRLOVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n filter(BTOXGR != \"<Missing>\") %>% # filter out missing baseline grade\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\n \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not Low (n) 116 110 101 \n Not Low 103 (88.8%) 91 (82.7%) 88 (87.1%) \n 1 3 (2.6%) 5 (4.5%) 6 (5.9%) \n 2 4 (3.4%) 9 (8.2%) 2 (2.0%) \n 3 3 (2.6%) 4 (3.6%) 4 (4.0%) \n 4 3 (2.6%) 1 (0.9%) 1 (1.0%) \n 1 (n) 4 7 5 \n Not Low 3 (75.0%) 7 (100%) 4 (80.0%) \n 3 1 (25.0%) 0 1 (20.0%) \n 2 (n) 5 6 11 \n Not Low 5 (100%) 5 (83.3%) 8 (72.7%) \n 1 0 0 1 (9.1%) \n 3 0 0 2 (18.2%) \n 4 0 1 (16.7%) 0 \n 3 (n) 6 8 5 \n Not Low 6 (100%) 7 (87.5%) 5 (100%) \n 3 0 1 (12.5%) 0 \n 4 (n) 3 3 10 \n Not Low 2 (66.7%) 3 (100%) 7 (70.0%) \n 1 0 0 2 (20.0%) \n 2 1 (33.3%) 0 0 \n 4 0 0 1 (10.0%) \n WEEK 2 DAY 15 \n Not Low (n) 106 111 116 \n Not Low 93 (87.7%) 93 (83.8%) 100 (86.2%) \n 1 3 (2.8%) 4 (3.6%) 8 (6.9%) \n 2 5 (4.7%) 7 (6.3%) 2 (1.7%) \n 3 2 (1.9%) 5 (4.5%) 6 (5.2%) \n 4 3 (2.8%) 2 (1.8%) 0 \n 1 (n) 15 9 2 \n Not Low 13 (86.7%) 8 (88.9%) 1 (50.0%) \n 2 0 1 (11.1%) 0 \n 3 2 (13.3%) 0 0 \n 4 0 0 1 (50.0%) \n 2 (n) 3 3 6 \n Not Low 3 (100%) 3 (100%) 4 (66.7%) \n 1 0 0 1 (16.7%) \n 3 0 0 1 (16.7%) \n 3 (n) 7 7 6 \n Not Low 7 (100%) 6 (85.7%) 5 (83.3%) \n 2 0 1 (14.3%) 0 \n 4 0 0 1 (16.7%) \n 4 (n) 3 4 2 \n Not Low 3 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n WEEK 3 DAY 22 \n Not Low (n) 119 110 114 \n Not Low 104 (87.4%) 92 (83.6%) 94 (82.5%) \n 1 3 (2.5%) 4 (3.6%) 9 (7.9%) \n 2 5 (4.2%) 7 (6.4%) 2 (1.8%) \n 3 4 (3.4%) 5 (4.5%) 7 (6.1%) \n 4 3 (2.5%) 2 (1.8%) 2 (1.8%) \n 1 (n) 9 9 6 \n Not Low 9 (100%) 7 (77.8%) 6 (100%) \n 2 0 2 (22.2%) 0 \n 2 (n) 1 7 3 \n Not Low 1 (100%) 6 (85.7%) 3 (100%) \n 1 0 1 (14.3%) 0 \n 3 (n) 4 5 4 \n Not Low 4 (100%) 5 (100%) 4 (100%) \n 4 (n) 1 3 5 \n Not Low 1 (100%) 3 (100%) 5 (100%) \n WEEK 4 DAY 29 \n Not Low (n) 101 119 111 \n Not Low 89 (88.1%) 100 (84.0%) 96 (86.5%) \n 1 3 (3.0%) 4 (3.4%) 6 (5.4%) \n 2 4 (4.0%) 8 (6.7%) 1 (0.9%) \n 3 2 (2.0%) 5 (4.2%) 6 (5.4%) \n 4 3 (3.0%) 2 (1.7%) 2 (1.8%) \n 1 (n) 10 5 6 \n Not Low 9 (90.0%) 5 (100%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 1 (10.0%) 0 0 \n 2 (n) 13 4 6 \n Not Low 13 (100%) 3 (75.0%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 0 1 (25.0%) 0 \n 3 (n) 8 2 6 \n Not Low 6 (75.0%) 1 (50.0%) 5 (83.3%) \n 1 0 1 (50.0%) 0 \n 2 0 0 1 (16.7%) \n 3 2 (25.0%) 0 0 \n 4 (n) 2 4 3 \n Not Low 2 (100%) 4 (100%) 1 (33.3%) \n 1 0 0 1 (33.3%) \n 3 0 0 1 (33.3%) \n WEEK 5 DAY 36 \n Not Low (n) 115 112 111 \n Not Low 102 (88.7%) 94 (83.9%) 96 (86.5%) \n 1 2 (1.7%) 4 (3.6%) 6 (5.4%) \n 2 5 (4.3%) 7 (6.2%) 2 (1.8%) \n 3 3 (2.6%) 5 (4.5%) 5 (4.5%) \n 4 3 (2.6%) 2 (1.8%) 2 (1.8%) \n 1 (n) 5 7 6 \n Not Low 5 (100%) 4 (57.1%) 5 (83.3%) \n 1 0 1 (14.3%) 1 (16.7%) \n 2 0 2 (28.6%) 0 \n 2 (n) 5 11 6 \n Not Low 5 (100%) 11 (100%) 6 (100%) \n 3 (n) 8 2 7 \n Not Low 6 (75.0%) 2 (100%) 4 (57.1%) \n 1 1 (12.5%) 0 1 (14.3%) \n 3 1 (12.5%) 0 2 (28.6%) \n 4 (n) 1 2 2 \n Not Low 1 (100%) 2 (100%) 1 (50.0%) \n 1 0 0 1 (50.0%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that when BTOXGR is missing, the grouping variable BTOXGR_GP is now \"Not High\" instead of \"Missing\" compared to Standard Table (High).\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRHIVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4, \"<Missing>\") ~ \"Not High\", # Missing BTOXGR now grouped to \"Not High\"\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\n \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not High (n) 111 110 112 \n Not High 93 (83.8%) 92 (83.6%) 98 (87.5%) \n 1 8 (7.2%) 7 (6.4%) 5 (4.5%) \n 2 2 (1.8%) 6 (5.5%) 7 (6.2%) \n 3 6 (5.4%) 3 (2.7%) 2 (1.8%) \n 4 2 (1.8%) 2 (1.8%) 0 \n 1 (n) 8 11 6 \n Not High 7 (87.5%) 11 (100%) 5 (83.3%) \n 3 1 (12.5%) 0 1 (16.7%) \n 2 (n) 6 4 5 \n Not High 6 (100%) 1 (25.0%) 4 (80.0%) \n 1 0 3 (75.0%) 1 (20.0%) \n 3 (n) 8 3 4 \n Not High 7 (87.5%) 3 (100%) 4 (100%) \n 4 1 (12.5%) 0 0 \n 4 (n) 1 6 5 \n Not High 1 (100%) 5 (83.3%) 4 (80.0%) \n 1 0 0 1 (20.0%) \n 3 0 1 (16.7%) 0 \n WEEK 2 DAY 15 \n Not High (n) 117 113 113 \n Not High 99 (84.6%) 95 (84.1%) 100 (88.5%) \n 1 7 (6.0%) 6 (5.3%) 4 (3.5%) \n 2 2 (1.7%) 6 (5.3%) 6 (5.3%) \n 3 6 (5.1%) 4 (3.5%) 3 (2.7%) \n 4 3 (2.6%) 2 (1.8%) 0 \n 1 (n) 6 9 7 \n Not High 5 (83.3%) 8 (88.9%) 6 (85.7%) \n 1 0 1 (11.1%) 0 \n 2 0 0 1 (14.3%) \n 3 1 (16.7%) 0 0 \n 2 (n) 4 4 6 \n Not High 4 (100%) 4 (100%) 3 (50.0%) \n 1 0 0 3 (50.0%) \n 3 (n) 5 3 5 \n Not High 4 (80.0%) 2 (66.7%) 5 (100%) \n 1 1 (20.0%) 1 (33.3%) 0 \n 4 (n) 2 5 1 \n Not High 2 (100%) 3 (60.0%) 1 (100%) \n 1 0 2 (40.0%) 0 \n WEEK 3 DAY 22 \n Not High (n) 110 111 114 \n Not High 92 (83.6%) 94 (84.7%) 98 (86.0%) \n 1 8 (7.3%) 9 (8.1%) 7 (6.1%) \n 2 2 (1.8%) 5 (4.5%) 6 (5.3%) \n 3 5 (4.5%) 2 (1.8%) 3 (2.6%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 7 8 7 \n Not High 7 (100%) 5 (62.5%) 6 (85.7%) \n 1 0 1 (12.5%) 0 \n 2 0 1 (12.5%) 1 (14.3%) \n 3 0 1 (12.5%) 0 \n 2 (n) 9 7 5 \n Not High 9 (100%) 6 (85.7%) 5 (100%) \n 3 0 1 (14.3%) 0 \n 3 (n) 6 3 4 \n Not High 5 (83.3%) 2 (66.7%) 4 (100%) \n 3 1 (16.7%) 0 0 \n 4 0 1 (33.3%) 0 \n 4 (n) 2 5 2 \n Not High 1 (50.0%) 5 (100%) 2 (100%) \n 3 1 (50.0%) 0 0 \n WEEK 4 DAY 29 \n Not High (n) 115 117 113 \n Not High 97 (84.3%) 101 (86.3%) 99 (87.6%) \n 1 8 (7.0%) 7 (6.0%) 6 (5.3%) \n 2 2 (1.7%) 6 (5.1%) 5 (4.4%) \n 3 7 (6.1%) 3 (2.6%) 3 (2.7%) \n 4 1 (0.9%) 0 0 \n 1 (n) 4 3 11 \n Not High 4 (100%) 2 (66.7%) 10 (90.9%) \n 2 0 0 1 (9.1%) \n 4 0 1 (33.3%) 0 \n 2 (n) 6 4 2 \n Not High 6 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n 3 (n) 6 7 4 \n Not High 5 (83.3%) 4 (57.1%) 4 (100%) \n 1 0 1 (14.3%) 0 \n 3 0 1 (14.3%) 0 \n 4 1 (16.7%) 1 (14.3%) 0 \n 4 (n) 3 3 2 \n Not High 2 (66.7%) 2 (66.7%) 0 \n 1 0 1 (33.3%) 1 (50.0%) \n 2 0 0 1 (50.0%) \n 4 1 (33.3%) 0 0 \n WEEK 5 DAY 36 \n Not High (n) 111 111 119 \n Not High 95 (85.6%) 95 (85.6%) 104 (87.4%) \n 1 6 (5.4%) 8 (7.2%) 6 (5.0%) \n 2 1 (0.9%) 5 (4.5%) 6 (5.0%) \n 3 6 (5.4%) 2 (1.8%) 3 (2.5%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 8 11 5 \n Not High 7 (87.5%) 9 (81.8%) 4 (80.0%) \n 1 0 1 (9.1%) 0 \n 2 0 0 1 (20.0%) \n 3 1 (12.5%) 1 (9.1%) 0 \n 2 (n) 7 6 3 \n Not High 5 (71.4%) 3 (50.0%) 2 (66.7%) \n 1 1 (14.3%) 1 (16.7%) 1 (33.3%) \n 2 1 (14.3%) 1 (16.7%) 0 \n 4 0 1 (16.7%) 0 \n 3 (n) 3 3 4 \n Not High 3 (100%) 3 (100%) 4 (100%) \n 4 (n) 5 3 1 \n Not High 4 (80.0%) 2 (66.7%) 1 (100%) \n 1 1 (20.0%) 0 0 \n 3 0 1 (33.3%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPre-processing is the same as for Standard Table (High), but in order to keep all levels, the drop argument in count_occurrences is set to FALSE.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRHIVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = keep_split_levels(c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n label_pos = \"topleft\",\n split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = FALSE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\n \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not High (n) 111 110 112 \n Not High 93 (83.8%) 92 (83.6%) 98 (87.5%) \n 1 8 (7.2%) 7 (6.4%) 5 (4.5%) \n 2 2 (1.8%) 6 (5.5%) 7 (6.2%) \n 3 6 (5.4%) 3 (2.7%) 2 (1.8%) \n 4 2 (1.8%) 2 (1.8%) 0 \n Missing 0 0 0 \n 1 (n) 8 11 6 \n Not High 7 (87.5%) 11 (100%) 5 (83.3%) \n 1 0 0 0 \n 2 0 0 0 \n 3 1 (12.5%) 0 1 (16.7%) \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 6 4 5 \n Not High 6 (100%) 1 (25.0%) 4 (80.0%) \n 1 0 3 (75.0%) 1 (20.0%) \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 8 3 4 \n Not High 7 (87.5%) 3 (100%) 4 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 1 (12.5%) 0 0 \n Missing 0 0 0 \n 4 (n) 1 6 5 \n Not High 1 (100%) 5 (83.3%) 4 (80.0%) \n 1 0 0 1 (20.0%) \n 2 0 0 0 \n 3 0 1 (16.7%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 2 DAY 15 \n Not High (n) 117 113 113 \n Not High 99 (84.6%) 95 (84.1%) 100 (88.5%) \n 1 7 (6.0%) 6 (5.3%) 4 (3.5%) \n 2 2 (1.7%) 6 (5.3%) 6 (5.3%) \n 3 6 (5.1%) 4 (3.5%) 3 (2.7%) \n 4 3 (2.6%) 2 (1.8%) 0 \n Missing 0 0 0 \n 1 (n) 6 9 7 \n Not High 5 (83.3%) 8 (88.9%) 6 (85.7%) \n 1 0 1 (11.1%) 0 \n 2 0 0 1 (14.3%) \n 3 1 (16.7%) 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 4 4 6 \n Not High 4 (100%) 4 (100%) 3 (50.0%) \n 1 0 0 3 (50.0%) \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 5 3 5 \n Not High 4 (80.0%) 2 (66.7%) 5 (100%) \n 1 1 (20.0%) 1 (33.3%) 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 4 (n) 2 5 1 \n Not High 2 (100%) 3 (60.0%) 1 (100%) \n 1 0 2 (40.0%) 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 3 DAY 22 \n Not High (n) 110 111 114 \n Not High 92 (83.6%) 94 (84.7%) 98 (86.0%) \n 1 8 (7.3%) 9 (8.1%) 7 (6.1%) \n 2 2 (1.8%) 5 (4.5%) 6 (5.3%) \n 3 5 (4.5%) 2 (1.8%) 3 (2.6%) \n 4 3 (2.7%) 1 (0.9%) 0 \n Missing 0 0 0 \n 1 (n) 7 8 7 \n Not High 7 (100%) 5 (62.5%) 6 (85.7%) \n 1 0 1 (12.5%) 0 \n 2 0 1 (12.5%) 1 (14.3%) \n 3 0 1 (12.5%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 9 7 5 \n Not High 9 (100%) 6 (85.7%) 5 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 1 (14.3%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 6 3 4 \n Not High 5 (83.3%) 2 (66.7%) 4 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 1 (16.7%) 0 0 \n 4 0 1 (33.3%) 0 \n Missing 0 0 0 \n 4 (n) 2 5 2 \n Not High 1 (50.0%) 5 (100%) 2 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 1 (50.0%) 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 4 DAY 29 \n Not High (n) 115 117 113 \n Not High 97 (84.3%) 101 (86.3%) 99 (87.6%) \n 1 8 (7.0%) 7 (6.0%) 6 (5.3%) \n 2 2 (1.7%) 6 (5.1%) 5 (4.4%) \n 3 7 (6.1%) 3 (2.6%) 3 (2.7%) \n 4 1 (0.9%) 0 0 \n Missing 0 0 0 \n 1 (n) 4 3 11 \n Not High 4 (100%) 2 (66.7%) 10 (90.9%) \n 1 0 0 0 \n 2 0 0 1 (9.1%) \n 3 0 0 0 \n 4 0 1 (33.3%) 0 \n Missing 0 0 0 \n 2 (n) 6 4 2 \n Not High 6 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 6 7 4 \n Not High 5 (83.3%) 4 (57.1%) 4 (100%) \n 1 0 1 (14.3%) 0 \n 2 0 0 0 \n 3 0 1 (14.3%) 0 \n 4 1 (16.7%) 1 (14.3%) 0 \n Missing 0 0 0 \n 4 (n) 3 3 2 \n Not High 2 (66.7%) 2 (66.7%) 0 \n 1 0 1 (33.3%) 1 (50.0%) \n 2 0 0 1 (50.0%) \n 3 0 0 0 \n 4 1 (33.3%) 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 5 DAY 36 \n Not High (n) 111 111 119 \n Not High 95 (85.6%) 95 (85.6%) 104 (87.4%) \n 1 6 (5.4%) 8 (7.2%) 6 (5.0%) \n 2 1 (0.9%) 5 (4.5%) 6 (5.0%) \n 3 6 (5.4%) 2 (1.8%) 3 (2.5%) \n 4 3 (2.7%) 1 (0.9%) 0 \n Missing 0 0 0 \n 1 (n) 8 11 5 \n Not High 7 (87.5%) 9 (81.8%) 4 (80.0%) \n 1 0 1 (9.1%) 0 \n 2 0 0 1 (20.0%) \n 3 1 (12.5%) 1 (9.1%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 7 6 3 \n Not High 5 (71.4%) 3 (50.0%) 2 (66.7%) \n 1 1 (14.3%) 1 (16.7%) 1 (33.3%) \n 2 1 (14.3%) 1 (16.7%) 0 \n 3 0 0 0 \n 4 0 1 (16.7%) 0 \n Missing 0 0 0 \n 3 (n) 3 3 4 \n Not High 3 (100%) 3 (100%) 4 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 4 (n) 5 3 1 \n Not High 4 (80.0%) 2 (66.7%) 1 (100%) \n 1 1 (20.0%) 0 0 \n 2 0 0 0 \n 3 0 1 (33.3%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPlease note that for each variant, the adlb dataset needs to be filtered on correct flags like WGRLOVFL, WGRHIVFL, et al., otherwise the layout function will not return the correct counts. There is an option to create a record for a lab test where no record is found at that visit. If you specified add_derived_type = \"PHANTOM\" & dtype_phantom_cond, you don’t have to use the h_adsl_adlb_merge_using_worst_flag function to preprocess your adlb dataset. Otherwise please follow the pre-processing steps below before applying the layout functions.\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\n# Please note that in real clinical data, population flag like SAFFL, and parameter category like PARCAT2 needs to be\n# selected properly.\nadsl_f <- adsl %>% filter(SAFFL == \"Y\")\nadlb <- adlb %>% filter(PARAMCD == \"CRP\" & SAFFL == \"Y\")", + "text": "Output\n\n\nStandard Table (Low)\nStandard Table (High)\nTable Without Patients with Missing Baseline (Low)\nTable with Missing Baseline Considered as Grade 0 (High)\nTable with Fill-In of Grades (High)\nData Setup\n\n\n\nNote that the worst laboratory flag (below WGRLOVFL) must be selected appropriately to match the direction of abnormality (here Low). New grouping variables ATOXGR_GP and BTOXGR_GP are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRLOVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\nParameter Code \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not Low (n) 116 110 101 \n Not Low 103 (88.8%) 91 (82.7%) 88 (87.1%) \n 1 3 (2.6%) 5 (4.5%) 6 (5.9%) \n 2 4 (3.4%) 9 (8.2%) 2 (2.0%) \n 3 3 (2.6%) 4 (3.6%) 4 (4.0%) \n 4 3 (2.6%) 1 (0.9%) 1 (1.0%) \n 1 (n) 4 7 5 \n Not Low 3 (75.0%) 7 (100%) 4 (80.0%) \n 3 1 (25.0%) 0 1 (20.0%) \n 2 (n) 5 6 11 \n Not Low 5 (100%) 5 (83.3%) 8 (72.7%) \n 1 0 0 1 (9.1%) \n 3 0 0 2 (18.2%) \n 4 0 1 (16.7%) 0 \n 3 (n) 6 8 5 \n Not Low 6 (100%) 7 (87.5%) 5 (100%) \n 3 0 1 (12.5%) 0 \n 4 (n) 3 3 10 \n Not Low 2 (66.7%) 3 (100%) 7 (70.0%) \n 1 0 0 2 (20.0%) \n 2 1 (33.3%) 0 0 \n 4 0 0 1 (10.0%) \n WEEK 2 DAY 15 \n Not Low (n) 106 111 116 \n Not Low 93 (87.7%) 93 (83.8%) 100 (86.2%) \n 1 3 (2.8%) 4 (3.6%) 8 (6.9%) \n 2 5 (4.7%) 7 (6.3%) 2 (1.7%) \n 3 2 (1.9%) 5 (4.5%) 6 (5.2%) \n 4 3 (2.8%) 2 (1.8%) 0 \n 1 (n) 15 9 2 \n Not Low 13 (86.7%) 8 (88.9%) 1 (50.0%) \n 2 0 1 (11.1%) 0 \n 3 2 (13.3%) 0 0 \n 4 0 0 1 (50.0%) \n 2 (n) 3 3 6 \n Not Low 3 (100%) 3 (100%) 4 (66.7%) \n 1 0 0 1 (16.7%) \n 3 0 0 1 (16.7%) \n 3 (n) 7 7 6 \n Not Low 7 (100%) 6 (85.7%) 5 (83.3%) \n 2 0 1 (14.3%) 0 \n 4 0 0 1 (16.7%) \n 4 (n) 3 4 2 \n Not Low 3 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n WEEK 3 DAY 22 \n Not Low (n) 119 110 114 \n Not Low 104 (87.4%) 92 (83.6%) 94 (82.5%) \n 1 3 (2.5%) 4 (3.6%) 9 (7.9%) \n 2 5 (4.2%) 7 (6.4%) 2 (1.8%) \n 3 4 (3.4%) 5 (4.5%) 7 (6.1%) \n 4 3 (2.5%) 2 (1.8%) 2 (1.8%) \n 1 (n) 9 9 6 \n Not Low 9 (100%) 7 (77.8%) 6 (100%) \n 2 0 2 (22.2%) 0 \n 2 (n) 1 7 3 \n Not Low 1 (100%) 6 (85.7%) 3 (100%) \n 1 0 1 (14.3%) 0 \n 3 (n) 4 5 4 \n Not Low 4 (100%) 5 (100%) 4 (100%) \n 4 (n) 1 3 5 \n Not Low 1 (100%) 3 (100%) 5 (100%) \n WEEK 4 DAY 29 \n Not Low (n) 101 119 111 \n Not Low 89 (88.1%) 100 (84.0%) 96 (86.5%) \n 1 3 (3.0%) 4 (3.4%) 6 (5.4%) \n 2 4 (4.0%) 8 (6.7%) 1 (0.9%) \n 3 2 (2.0%) 5 (4.2%) 6 (5.4%) \n 4 3 (3.0%) 2 (1.7%) 2 (1.8%) \n 1 (n) 10 5 6 \n Not Low 9 (90.0%) 5 (100%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 1 (10.0%) 0 0 \n 2 (n) 13 4 6 \n Not Low 13 (100%) 3 (75.0%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 0 1 (25.0%) 0 \n 3 (n) 8 2 6 \n Not Low 6 (75.0%) 1 (50.0%) 5 (83.3%) \n 1 0 1 (50.0%) 0 \n 2 0 0 1 (16.7%) \n 3 2 (25.0%) 0 0 \n 4 (n) 2 4 3 \n Not Low 2 (100%) 4 (100%) 1 (33.3%) \n 1 0 0 1 (33.3%) \n 3 0 0 1 (33.3%) \n WEEK 5 DAY 36 \n Not Low (n) 115 112 111 \n Not Low 102 (88.7%) 94 (83.9%) 96 (86.5%) \n 1 2 (1.7%) 4 (3.6%) 6 (5.4%) \n 2 5 (4.3%) 7 (6.2%) 2 (1.8%) \n 3 3 (2.6%) 5 (4.5%) 5 (4.5%) \n 4 3 (2.6%) 2 (1.8%) 2 (1.8%) \n 1 (n) 5 7 6 \n Not Low 5 (100%) 4 (57.1%) 5 (83.3%) \n 1 0 1 (14.3%) 1 (16.7%) \n 2 0 2 (28.6%) 0 \n 2 (n) 5 11 6 \n Not Low 5 (100%) 11 (100%) 6 (100%) \n 3 (n) 8 2 7 \n Not Low 6 (75.0%) 2 (100%) 4 (57.1%) \n 1 1 (12.5%) 0 1 (14.3%) \n 3 1 (12.5%) 0 2 (28.6%) \n 4 (n) 1 2 2 \n Not Low 1 (100%) 2 (100%) 1 (50.0%) \n 1 0 0 1 (50.0%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that the worst laboratory flag (below WGRHIVFL) must be selected appropriately to match the direction of abnormality (here High). New grouping variables ATOXGR_GP and BTOXGR_GP are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRHIVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\nParameter Code \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not High (n) 111 110 112 \n Not High 93 (83.8%) 92 (83.6%) 98 (87.5%) \n 1 8 (7.2%) 7 (6.4%) 5 (4.5%) \n 2 2 (1.8%) 6 (5.5%) 7 (6.2%) \n 3 6 (5.4%) 3 (2.7%) 2 (1.8%) \n 4 2 (1.8%) 2 (1.8%) 0 \n 1 (n) 8 11 6 \n Not High 7 (87.5%) 11 (100%) 5 (83.3%) \n 3 1 (12.5%) 0 1 (16.7%) \n 2 (n) 6 4 5 \n Not High 6 (100%) 1 (25.0%) 4 (80.0%) \n 1 0 3 (75.0%) 1 (20.0%) \n 3 (n) 8 3 4 \n Not High 7 (87.5%) 3 (100%) 4 (100%) \n 4 1 (12.5%) 0 0 \n 4 (n) 1 6 5 \n Not High 1 (100%) 5 (83.3%) 4 (80.0%) \n 1 0 0 1 (20.0%) \n 3 0 1 (16.7%) 0 \n WEEK 2 DAY 15 \n Not High (n) 117 113 113 \n Not High 99 (84.6%) 95 (84.1%) 100 (88.5%) \n 1 7 (6.0%) 6 (5.3%) 4 (3.5%) \n 2 2 (1.7%) 6 (5.3%) 6 (5.3%) \n 3 6 (5.1%) 4 (3.5%) 3 (2.7%) \n 4 3 (2.6%) 2 (1.8%) 0 \n 1 (n) 6 9 7 \n Not High 5 (83.3%) 8 (88.9%) 6 (85.7%) \n 1 0 1 (11.1%) 0 \n 2 0 0 1 (14.3%) \n 3 1 (16.7%) 0 0 \n 2 (n) 4 4 6 \n Not High 4 (100%) 4 (100%) 3 (50.0%) \n 1 0 0 3 (50.0%) \n 3 (n) 5 3 5 \n Not High 4 (80.0%) 2 (66.7%) 5 (100%) \n 1 1 (20.0%) 1 (33.3%) 0 \n 4 (n) 2 5 1 \n Not High 2 (100%) 3 (60.0%) 1 (100%) \n 1 0 2 (40.0%) 0 \n WEEK 3 DAY 22 \n Not High (n) 110 111 114 \n Not High 92 (83.6%) 94 (84.7%) 98 (86.0%) \n 1 8 (7.3%) 9 (8.1%) 7 (6.1%) \n 2 2 (1.8%) 5 (4.5%) 6 (5.3%) \n 3 5 (4.5%) 2 (1.8%) 3 (2.6%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 7 8 7 \n Not High 7 (100%) 5 (62.5%) 6 (85.7%) \n 1 0 1 (12.5%) 0 \n 2 0 1 (12.5%) 1 (14.3%) \n 3 0 1 (12.5%) 0 \n 2 (n) 9 7 5 \n Not High 9 (100%) 6 (85.7%) 5 (100%) \n 3 0 1 (14.3%) 0 \n 3 (n) 6 3 4 \n Not High 5 (83.3%) 2 (66.7%) 4 (100%) \n 3 1 (16.7%) 0 0 \n 4 0 1 (33.3%) 0 \n 4 (n) 2 5 2 \n Not High 1 (50.0%) 5 (100%) 2 (100%) \n 3 1 (50.0%) 0 0 \n WEEK 4 DAY 29 \n Not High (n) 115 117 113 \n Not High 97 (84.3%) 101 (86.3%) 99 (87.6%) \n 1 8 (7.0%) 7 (6.0%) 6 (5.3%) \n 2 2 (1.7%) 6 (5.1%) 5 (4.4%) \n 3 7 (6.1%) 3 (2.6%) 3 (2.7%) \n 4 1 (0.9%) 0 0 \n 1 (n) 4 3 11 \n Not High 4 (100%) 2 (66.7%) 10 (90.9%) \n 2 0 0 1 (9.1%) \n 4 0 1 (33.3%) 0 \n 2 (n) 6 4 2 \n Not High 6 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n 3 (n) 6 7 4 \n Not High 5 (83.3%) 4 (57.1%) 4 (100%) \n 1 0 1 (14.3%) 0 \n 3 0 1 (14.3%) 0 \n 4 1 (16.7%) 1 (14.3%) 0 \n 4 (n) 3 3 2 \n Not High 2 (66.7%) 2 (66.7%) 0 \n 1 0 1 (33.3%) 1 (50.0%) \n 2 0 0 1 (50.0%) \n 4 1 (33.3%) 0 0 \n WEEK 5 DAY 36 \n Not High (n) 111 111 119 \n Not High 95 (85.6%) 95 (85.6%) 104 (87.4%) \n 1 6 (5.4%) 8 (7.2%) 6 (5.0%) \n 2 1 (0.9%) 5 (4.5%) 6 (5.0%) \n 3 6 (5.4%) 2 (1.8%) 3 (2.5%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 8 11 5 \n Not High 7 (87.5%) 9 (81.8%) 4 (80.0%) \n 1 0 1 (9.1%) 0 \n 2 0 0 1 (20.0%) \n 3 1 (12.5%) 1 (9.1%) 0 \n 2 (n) 7 6 3 \n Not High 5 (71.4%) 3 (50.0%) 2 (66.7%) \n 1 1 (14.3%) 1 (16.7%) 1 (33.3%) \n 2 1 (14.3%) 1 (16.7%) 0 \n 4 0 1 (16.7%) 0 \n 3 (n) 3 3 4 \n Not High 3 (100%) 3 (100%) 4 (100%) \n 4 (n) 5 3 1 \n Not High 4 (80.0%) 2 (66.7%) 1 (100%) \n 1 1 (20.0%) 0 0 \n 3 0 1 (33.3%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that missing baseline values are filtered out in the pre-processing step.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRLOVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n filter(BTOXGR != \"<Missing>\") %>% # filter out missing baseline grade\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\nParameter Code \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not Low (n) 116 110 101 \n Not Low 103 (88.8%) 91 (82.7%) 88 (87.1%) \n 1 3 (2.6%) 5 (4.5%) 6 (5.9%) \n 2 4 (3.4%) 9 (8.2%) 2 (2.0%) \n 3 3 (2.6%) 4 (3.6%) 4 (4.0%) \n 4 3 (2.6%) 1 (0.9%) 1 (1.0%) \n 1 (n) 4 7 5 \n Not Low 3 (75.0%) 7 (100%) 4 (80.0%) \n 3 1 (25.0%) 0 1 (20.0%) \n 2 (n) 5 6 11 \n Not Low 5 (100%) 5 (83.3%) 8 (72.7%) \n 1 0 0 1 (9.1%) \n 3 0 0 2 (18.2%) \n 4 0 1 (16.7%) 0 \n 3 (n) 6 8 5 \n Not Low 6 (100%) 7 (87.5%) 5 (100%) \n 3 0 1 (12.5%) 0 \n 4 (n) 3 3 10 \n Not Low 2 (66.7%) 3 (100%) 7 (70.0%) \n 1 0 0 2 (20.0%) \n 2 1 (33.3%) 0 0 \n 4 0 0 1 (10.0%) \n WEEK 2 DAY 15 \n Not Low (n) 106 111 116 \n Not Low 93 (87.7%) 93 (83.8%) 100 (86.2%) \n 1 3 (2.8%) 4 (3.6%) 8 (6.9%) \n 2 5 (4.7%) 7 (6.3%) 2 (1.7%) \n 3 2 (1.9%) 5 (4.5%) 6 (5.2%) \n 4 3 (2.8%) 2 (1.8%) 0 \n 1 (n) 15 9 2 \n Not Low 13 (86.7%) 8 (88.9%) 1 (50.0%) \n 2 0 1 (11.1%) 0 \n 3 2 (13.3%) 0 0 \n 4 0 0 1 (50.0%) \n 2 (n) 3 3 6 \n Not Low 3 (100%) 3 (100%) 4 (66.7%) \n 1 0 0 1 (16.7%) \n 3 0 0 1 (16.7%) \n 3 (n) 7 7 6 \n Not Low 7 (100%) 6 (85.7%) 5 (83.3%) \n 2 0 1 (14.3%) 0 \n 4 0 0 1 (16.7%) \n 4 (n) 3 4 2 \n Not Low 3 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n WEEK 3 DAY 22 \n Not Low (n) 119 110 114 \n Not Low 104 (87.4%) 92 (83.6%) 94 (82.5%) \n 1 3 (2.5%) 4 (3.6%) 9 (7.9%) \n 2 5 (4.2%) 7 (6.4%) 2 (1.8%) \n 3 4 (3.4%) 5 (4.5%) 7 (6.1%) \n 4 3 (2.5%) 2 (1.8%) 2 (1.8%) \n 1 (n) 9 9 6 \n Not Low 9 (100%) 7 (77.8%) 6 (100%) \n 2 0 2 (22.2%) 0 \n 2 (n) 1 7 3 \n Not Low 1 (100%) 6 (85.7%) 3 (100%) \n 1 0 1 (14.3%) 0 \n 3 (n) 4 5 4 \n Not Low 4 (100%) 5 (100%) 4 (100%) \n 4 (n) 1 3 5 \n Not Low 1 (100%) 3 (100%) 5 (100%) \n WEEK 4 DAY 29 \n Not Low (n) 101 119 111 \n Not Low 89 (88.1%) 100 (84.0%) 96 (86.5%) \n 1 3 (3.0%) 4 (3.4%) 6 (5.4%) \n 2 4 (4.0%) 8 (6.7%) 1 (0.9%) \n 3 2 (2.0%) 5 (4.2%) 6 (5.4%) \n 4 3 (3.0%) 2 (1.7%) 2 (1.8%) \n 1 (n) 10 5 6 \n Not Low 9 (90.0%) 5 (100%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 1 (10.0%) 0 0 \n 2 (n) 13 4 6 \n Not Low 13 (100%) 3 (75.0%) 5 (83.3%) \n 1 0 0 1 (16.7%) \n 2 0 1 (25.0%) 0 \n 3 (n) 8 2 6 \n Not Low 6 (75.0%) 1 (50.0%) 5 (83.3%) \n 1 0 1 (50.0%) 0 \n 2 0 0 1 (16.7%) \n 3 2 (25.0%) 0 0 \n 4 (n) 2 4 3 \n Not Low 2 (100%) 4 (100%) 1 (33.3%) \n 1 0 0 1 (33.3%) \n 3 0 0 1 (33.3%) \n WEEK 5 DAY 36 \n Not Low (n) 115 112 111 \n Not Low 102 (88.7%) 94 (83.9%) 96 (86.5%) \n 1 2 (1.7%) 4 (3.6%) 6 (5.4%) \n 2 5 (4.3%) 7 (6.2%) 2 (1.8%) \n 3 3 (2.6%) 5 (4.5%) 5 (4.5%) \n 4 3 (2.6%) 2 (1.8%) 2 (1.8%) \n 1 (n) 5 7 6 \n Not Low 5 (100%) 4 (57.1%) 5 (83.3%) \n 1 0 1 (14.3%) 1 (16.7%) \n 2 0 2 (28.6%) 0 \n 2 (n) 5 11 6 \n Not Low 5 (100%) 11 (100%) 6 (100%) \n 3 (n) 8 2 7 \n Not Low 6 (75.0%) 2 (100%) 4 (57.1%) \n 1 1 (12.5%) 0 1 (14.3%) \n 3 1 (12.5%) 0 2 (28.6%) \n 4 (n) 1 2 2 \n Not Low 1 (100%) 2 (100%) 1 (50.0%) \n 1 0 0 1 (50.0%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that when BTOXGR is missing, the grouping variable BTOXGR_GP is now \"Not High\" instead of \"Missing\" compared to Standard Table (High).\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRHIVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4, \"<Missing>\") ~ \"Not High\", # Missing BTOXGR now grouped to \"Not High\"\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = TRUE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\nParameter Code \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not High (n) 111 110 112 \n Not High 93 (83.8%) 92 (83.6%) 98 (87.5%) \n 1 8 (7.2%) 7 (6.4%) 5 (4.5%) \n 2 2 (1.8%) 6 (5.5%) 7 (6.2%) \n 3 6 (5.4%) 3 (2.7%) 2 (1.8%) \n 4 2 (1.8%) 2 (1.8%) 0 \n 1 (n) 8 11 6 \n Not High 7 (87.5%) 11 (100%) 5 (83.3%) \n 3 1 (12.5%) 0 1 (16.7%) \n 2 (n) 6 4 5 \n Not High 6 (100%) 1 (25.0%) 4 (80.0%) \n 1 0 3 (75.0%) 1 (20.0%) \n 3 (n) 8 3 4 \n Not High 7 (87.5%) 3 (100%) 4 (100%) \n 4 1 (12.5%) 0 0 \n 4 (n) 1 6 5 \n Not High 1 (100%) 5 (83.3%) 4 (80.0%) \n 1 0 0 1 (20.0%) \n 3 0 1 (16.7%) 0 \n WEEK 2 DAY 15 \n Not High (n) 117 113 113 \n Not High 99 (84.6%) 95 (84.1%) 100 (88.5%) \n 1 7 (6.0%) 6 (5.3%) 4 (3.5%) \n 2 2 (1.7%) 6 (5.3%) 6 (5.3%) \n 3 6 (5.1%) 4 (3.5%) 3 (2.7%) \n 4 3 (2.6%) 2 (1.8%) 0 \n 1 (n) 6 9 7 \n Not High 5 (83.3%) 8 (88.9%) 6 (85.7%) \n 1 0 1 (11.1%) 0 \n 2 0 0 1 (14.3%) \n 3 1 (16.7%) 0 0 \n 2 (n) 4 4 6 \n Not High 4 (100%) 4 (100%) 3 (50.0%) \n 1 0 0 3 (50.0%) \n 3 (n) 5 3 5 \n Not High 4 (80.0%) 2 (66.7%) 5 (100%) \n 1 1 (20.0%) 1 (33.3%) 0 \n 4 (n) 2 5 1 \n Not High 2 (100%) 3 (60.0%) 1 (100%) \n 1 0 2 (40.0%) 0 \n WEEK 3 DAY 22 \n Not High (n) 110 111 114 \n Not High 92 (83.6%) 94 (84.7%) 98 (86.0%) \n 1 8 (7.3%) 9 (8.1%) 7 (6.1%) \n 2 2 (1.8%) 5 (4.5%) 6 (5.3%) \n 3 5 (4.5%) 2 (1.8%) 3 (2.6%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 7 8 7 \n Not High 7 (100%) 5 (62.5%) 6 (85.7%) \n 1 0 1 (12.5%) 0 \n 2 0 1 (12.5%) 1 (14.3%) \n 3 0 1 (12.5%) 0 \n 2 (n) 9 7 5 \n Not High 9 (100%) 6 (85.7%) 5 (100%) \n 3 0 1 (14.3%) 0 \n 3 (n) 6 3 4 \n Not High 5 (83.3%) 2 (66.7%) 4 (100%) \n 3 1 (16.7%) 0 0 \n 4 0 1 (33.3%) 0 \n 4 (n) 2 5 2 \n Not High 1 (50.0%) 5 (100%) 2 (100%) \n 3 1 (50.0%) 0 0 \n WEEK 4 DAY 29 \n Not High (n) 115 117 113 \n Not High 97 (84.3%) 101 (86.3%) 99 (87.6%) \n 1 8 (7.0%) 7 (6.0%) 6 (5.3%) \n 2 2 (1.7%) 6 (5.1%) 5 (4.4%) \n 3 7 (6.1%) 3 (2.6%) 3 (2.7%) \n 4 1 (0.9%) 0 0 \n 1 (n) 4 3 11 \n Not High 4 (100%) 2 (66.7%) 10 (90.9%) \n 2 0 0 1 (9.1%) \n 4 0 1 (33.3%) 0 \n 2 (n) 6 4 2 \n Not High 6 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n 3 (n) 6 7 4 \n Not High 5 (83.3%) 4 (57.1%) 4 (100%) \n 1 0 1 (14.3%) 0 \n 3 0 1 (14.3%) 0 \n 4 1 (16.7%) 1 (14.3%) 0 \n 4 (n) 3 3 2 \n Not High 2 (66.7%) 2 (66.7%) 0 \n 1 0 1 (33.3%) 1 (50.0%) \n 2 0 0 1 (50.0%) \n 4 1 (33.3%) 0 0 \n WEEK 5 DAY 36 \n Not High (n) 111 111 119 \n Not High 95 (85.6%) 95 (85.6%) 104 (87.4%) \n 1 6 (5.4%) 8 (7.2%) 6 (5.0%) \n 2 1 (0.9%) 5 (4.5%) 6 (5.0%) \n 3 6 (5.4%) 2 (1.8%) 3 (2.5%) \n 4 3 (2.7%) 1 (0.9%) 0 \n 1 (n) 8 11 5 \n Not High 7 (87.5%) 9 (81.8%) 4 (80.0%) \n 1 0 1 (9.1%) 0 \n 2 0 0 1 (20.0%) \n 3 1 (12.5%) 1 (9.1%) 0 \n 2 (n) 7 6 3 \n Not High 5 (71.4%) 3 (50.0%) 2 (66.7%) \n 1 1 (14.3%) 1 (16.7%) 1 (33.3%) \n 2 1 (14.3%) 1 (16.7%) 0 \n 4 0 1 (16.7%) 0 \n 3 (n) 3 3 4 \n Not High 3 (100%) 3 (100%) 4 (100%) \n 4 (n) 5 3 1 \n Not High 4 (80.0%) 2 (66.7%) 1 (100%) \n 1 1 (20.0%) 0 0 \n 3 0 1 (33.3%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPre-processing is the same as for Standard Table (High), but in order to keep all levels, the drop argument in count_occurrences is set to FALSE.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIVFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- adsl_f %>%\n h_adsl_adlb_merge_using_worst_flag(\n adlb_f,\n worst_flag = c(\"WGRHIVFL\" = \"Y\"),\n by_visit = TRUE,\n no_fillin_visits = c(\"SCREENING\", \"BASELINE\", \"UNSCHEDULED\")\n )\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n )\n ) %>%\n mutate(\n BTOXGR_GP = case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n )\n )\n\nadlb_out <- adlb_out %>% mutate(\n AVISIT = forcats::fct_reorder(AVISIT, AVISITN),\n ATOXGR_GP = factor(ATOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n BTOXGR_GP = factor(BTOXGR_GP, levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n)\n\nadlb_out <- adlb_out %>%\n var_relabel(\n PARAMCD = \"Parameter Code\",\n AVISIT = \"Visit\",\n ATOXGR_GP = \"NCI CTCAE Grade at Visit\",\n BTOXGR_GP = \"Baseline NCI CTCAE Grade\"\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAMCD\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$PARAMCD)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb_out$AVISIT)\n ) %>%\n split_rows_by(\n \"ATOXGR_GP\",\n split_fun = keep_split_levels(c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\")),\n label_pos = \"topleft\",\n split_label = obj_label(adlb_out$ATOXGR_GP)\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\")) %>%\n count_occurrences(\"BTOXGR_GP\", denom = \"n\", drop = FALSE) %>%\n append_varlabels(adlb_out, \"BTOXGR_GP\", indent = 3L) %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\nParameter Code \n Visit \n NCI CTCAE Grade at Visit A: Drug X B: Placebo C: Combination\n Baseline NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————\nCRP \n WEEK 1 DAY 8 \n Not High (n) 111 110 112 \n Not High 93 (83.8%) 92 (83.6%) 98 (87.5%) \n 1 8 (7.2%) 7 (6.4%) 5 (4.5%) \n 2 2 (1.8%) 6 (5.5%) 7 (6.2%) \n 3 6 (5.4%) 3 (2.7%) 2 (1.8%) \n 4 2 (1.8%) 2 (1.8%) 0 \n Missing 0 0 0 \n 1 (n) 8 11 6 \n Not High 7 (87.5%) 11 (100%) 5 (83.3%) \n 1 0 0 0 \n 2 0 0 0 \n 3 1 (12.5%) 0 1 (16.7%) \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 6 4 5 \n Not High 6 (100%) 1 (25.0%) 4 (80.0%) \n 1 0 3 (75.0%) 1 (20.0%) \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 8 3 4 \n Not High 7 (87.5%) 3 (100%) 4 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 1 (12.5%) 0 0 \n Missing 0 0 0 \n 4 (n) 1 6 5 \n Not High 1 (100%) 5 (83.3%) 4 (80.0%) \n 1 0 0 1 (20.0%) \n 2 0 0 0 \n 3 0 1 (16.7%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 2 DAY 15 \n Not High (n) 117 113 113 \n Not High 99 (84.6%) 95 (84.1%) 100 (88.5%) \n 1 7 (6.0%) 6 (5.3%) 4 (3.5%) \n 2 2 (1.7%) 6 (5.3%) 6 (5.3%) \n 3 6 (5.1%) 4 (3.5%) 3 (2.7%) \n 4 3 (2.6%) 2 (1.8%) 0 \n Missing 0 0 0 \n 1 (n) 6 9 7 \n Not High 5 (83.3%) 8 (88.9%) 6 (85.7%) \n 1 0 1 (11.1%) 0 \n 2 0 0 1 (14.3%) \n 3 1 (16.7%) 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 4 4 6 \n Not High 4 (100%) 4 (100%) 3 (50.0%) \n 1 0 0 3 (50.0%) \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 5 3 5 \n Not High 4 (80.0%) 2 (66.7%) 5 (100%) \n 1 1 (20.0%) 1 (33.3%) 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 4 (n) 2 5 1 \n Not High 2 (100%) 3 (60.0%) 1 (100%) \n 1 0 2 (40.0%) 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 3 DAY 22 \n Not High (n) 110 111 114 \n Not High 92 (83.6%) 94 (84.7%) 98 (86.0%) \n 1 8 (7.3%) 9 (8.1%) 7 (6.1%) \n 2 2 (1.8%) 5 (4.5%) 6 (5.3%) \n 3 5 (4.5%) 2 (1.8%) 3 (2.6%) \n 4 3 (2.7%) 1 (0.9%) 0 \n Missing 0 0 0 \n 1 (n) 7 8 7 \n Not High 7 (100%) 5 (62.5%) 6 (85.7%) \n 1 0 1 (12.5%) 0 \n 2 0 1 (12.5%) 1 (14.3%) \n 3 0 1 (12.5%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 9 7 5 \n Not High 9 (100%) 6 (85.7%) 5 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 1 (14.3%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 6 3 4 \n Not High 5 (83.3%) 2 (66.7%) 4 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 1 (16.7%) 0 0 \n 4 0 1 (33.3%) 0 \n Missing 0 0 0 \n 4 (n) 2 5 2 \n Not High 1 (50.0%) 5 (100%) 2 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 1 (50.0%) 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 4 DAY 29 \n Not High (n) 115 117 113 \n Not High 97 (84.3%) 101 (86.3%) 99 (87.6%) \n 1 8 (7.0%) 7 (6.0%) 6 (5.3%) \n 2 2 (1.7%) 6 (5.1%) 5 (4.4%) \n 3 7 (6.1%) 3 (2.6%) 3 (2.7%) \n 4 1 (0.9%) 0 0 \n Missing 0 0 0 \n 1 (n) 4 3 11 \n Not High 4 (100%) 2 (66.7%) 10 (90.9%) \n 1 0 0 0 \n 2 0 0 1 (9.1%) \n 3 0 0 0 \n 4 0 1 (33.3%) 0 \n Missing 0 0 0 \n 2 (n) 6 4 2 \n Not High 6 (100%) 3 (75.0%) 2 (100%) \n 1 0 1 (25.0%) 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 (n) 6 7 4 \n Not High 5 (83.3%) 4 (57.1%) 4 (100%) \n 1 0 1 (14.3%) 0 \n 2 0 0 0 \n 3 0 1 (14.3%) 0 \n 4 1 (16.7%) 1 (14.3%) 0 \n Missing 0 0 0 \n 4 (n) 3 3 2 \n Not High 2 (66.7%) 2 (66.7%) 0 \n 1 0 1 (33.3%) 1 (50.0%) \n 2 0 0 1 (50.0%) \n 3 0 0 0 \n 4 1 (33.3%) 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n WEEK 5 DAY 36 \n Not High (n) 111 111 119 \n Not High 95 (85.6%) 95 (85.6%) 104 (87.4%) \n 1 6 (5.4%) 8 (7.2%) 6 (5.0%) \n 2 1 (0.9%) 5 (4.5%) 6 (5.0%) \n 3 6 (5.4%) 2 (1.8%) 3 (2.5%) \n 4 3 (2.7%) 1 (0.9%) 0 \n Missing 0 0 0 \n 1 (n) 8 11 5 \n Not High 7 (87.5%) 9 (81.8%) 4 (80.0%) \n 1 0 1 (9.1%) 0 \n 2 0 0 1 (20.0%) \n 3 1 (12.5%) 1 (9.1%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 (n) 7 6 3 \n Not High 5 (71.4%) 3 (50.0%) 2 (66.7%) \n 1 1 (14.3%) 1 (16.7%) 1 (33.3%) \n 2 1 (14.3%) 1 (16.7%) 0 \n 3 0 0 0 \n 4 0 1 (16.7%) 0 \n Missing 0 0 0 \n 3 (n) 3 3 4 \n Not High 3 (100%) 3 (100%) 4 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 4 (n) 5 3 1 \n Not High 4 (80.0%) 2 (66.7%) 1 (100%) \n 1 1 (20.0%) 0 0 \n 2 0 0 0 \n 3 0 1 (33.3%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing (n) 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPlease note that for each variant, the adlb dataset needs to be filtered on correct flags like WGRLOVFL, WGRHIVFL, et al., otherwise the layout function will not return the correct counts. There is an option to create a record for a lab test where no record is found at that visit. If you specified add_derived_type = \"PHANTOM\" & dtype_phantom_cond, you don’t have to use the h_adsl_adlb_merge_using_worst_flag function to preprocess your adlb dataset. Otherwise please follow the pre-processing steps below before applying the layout functions.\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\n# Please note that in real clinical data, population flag like SAFFL, and parameter category like PARCAT2 needs to be\n# selected properly.\nadsl_f <- adsl %>% filter(SAFFL == \"Y\")\nadlb <- adlb %>% filter(PARAMCD == \"CRP\" & SAFFL == \"Y\")", "crumbs": [ "Tables", "Lab Results", @@ -1225,7 +1225,7 @@ "href": "tables/lab-results/lbt13.html#reproducibility", "title": "LBT13", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:57:25 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.0 2024-11-26 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.1 2024-11-26 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9090 2024-11-27 [1] https://p~\n teal.code * 0.5.0.9019 2024-11-27 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-27 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-27 [1] https://p~\n teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:53:26 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.1 2024-11-27 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.2 2024-11-28 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9091 2024-11-30 [1] https://p~\n teal.code * 0.5.0.9020 2024-11-30 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-30 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-30 [1] https://p~\n teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -1237,7 +1237,7 @@ "href": "tables/lab-results/lbt08.html#output", "title": "LBT08", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\nNote: The direction of the shift table for each lab test is based on metadata and NCI CTCAE specifications. In addition, the worst laboratory flags must be selected appropriately to match the direction of abnormality. For example, if any lab requires a shift table for both directions, then both worst_flag_low and worst_flag_high must be specified in h_adlb_worsen. If all labs requires a shift table for only one direction, then the matching worst lab flag variable must be selected in h_adlb_worsen.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARMCD\") %>%\n split_rows_by(\"PARAMCD\", label_pos = \"topleft\", split_label = obj_label(df$PARAMCD)) %>%\n split_rows_by(\"GRADDR\", label_pos = \"topleft\", split_label = obj_label(df$GRADDR)) %>%\n count_abnormal_lab_worsen_by_baseline(\n var = \"ATOXGR\",\n variables = list(\n id = \"USUBJID\",\n baseline_var = \"BTOXGR\",\n direction_var = \"GRADDR\"\n )\n ) %>%\n append_topleft(\" Highest NCI CTCAE Grade\") %>%\n build_table(df = df, alt_counts_df = adsl)\n\nresult\n\n \n Direction of Abnormality ARM A ARM B ARM C \n Highest NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————\nALT \n Low \n 1 11/113 (9.7%) 9/117 (7.7%) 15/123 (12.2%)\n 2 15/119 (12.6%) 23/123 (18.7%) 16/127 (12.6%)\n 3 15/127 (11.8%) 22/128 (17.2%) 14/128 (10.9%)\n 4 17/130 (13.1%) 10/131 (7.6%) 18/130 (13.8%)\n Any 58/130 (44.6%) 64/131 (48.9%) 63/130 (48.5%)\nCRP \n High \n 1 18/114 (15.8%) 18/112 (16.1%) 19/115 (16.5%)\n 2 20/122 (16.4%) 13/122 (10.7%) 14/122 (11.5%)\n 3 23/124 (18.5%) 14/128 (10.9%) 20/129 (15.5%)\n 4 12/131 (9.2%) 20/132 (15.2%) 11/132 (8.3%) \n Any 73/131 (55.7%) 65/132 (49.2%) 64/132 (48.5%)\n Low \n 1 20/119 (16.8%) 18/113 (15.9%) 11/112 (9.8%) \n 2 24/122 (19.7%) 21/118 (17.8%) 17/121 (14%) \n 3 26/127 (20.5%) 20/127 (15.7%) 22/123 (17.9%)\n 4 10/131 (7.6%) 16/132 (12.1%) 21/130 (16.2%)\n Any 80/131 (61.1%) 75/132 (56.8%) 71/130 (54.6%)\nIGA \n High \n 1 18/119 (15.1%) 11/116 (9.5%) 15/113 (13.3%)\n 2 15/124 (12.1%) 23/120 (19.2%) 19/115 (16.5%)\n 3 21/128 (16.4%) 21/124 (16.9%) 20/120 (16.7%)\n 4 12/132 (9.1%) 12/129 (9.3%) 9/131 (6.9%) \n Any 66/132 (50%) 67/129 (51.9%) 63/131 (48.1%)\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadlb <- adlb %>%\n mutate(\n GRADDR = case_when(\n PARAMCD == \"ALT\" ~ \"L\",\n PARAMCD == \"CRP\" ~ \"B\",\n PARAMCD == \"IGA\" ~ \"H\"\n )\n ) %>%\n filter(SAFFL == \"Y\" & ONTRTFL == \"Y\" & GRADDR != \"\")\n\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\ndf <- h_adlb_worsen(\n adlb,\n worst_flag_low = c(\"WGRLOFL\" = \"Y\"),\n worst_flag_high = c(\"WGRHIFL\" = \"Y\"),\n direction_var = \"GRADDR\"\n)\n\nattributes(df$GRADDR) <- list(\"label\" = \"Direction of Abnormality\")", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\nNote: The direction of the shift table for each lab test is based on metadata and NCI CTCAE specifications. In addition, the worst laboratory flags must be selected appropriately to match the direction of abnormality. For example, if any lab requires a shift table for both directions, then both worst_flag_low and worst_flag_high must be specified in h_adlb_worsen. If all labs requires a shift table for only one direction, then the matching worst lab flag variable must be selected in h_adlb_worsen.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARMCD\") %>%\n split_rows_by(\"PARAMCD\", label_pos = \"topleft\", split_label = obj_label(df$PARAMCD)) %>%\n split_rows_by(\"GRADDR\", label_pos = \"topleft\", split_label = obj_label(df$GRADDR)) %>%\n count_abnormal_lab_worsen_by_baseline(\n var = \"ATOXGR\",\n variables = list(\n id = \"USUBJID\",\n baseline_var = \"BTOXGR\",\n direction_var = \"GRADDR\"\n )\n ) %>%\n append_topleft(\" Highest NCI CTCAE Grade\") %>%\n build_table(df = df, alt_counts_df = adsl)\n\nresult\n\nParameter Code \n Direction of Abnormality ARM A ARM B ARM C \n Highest NCI CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————\nALT \n Low \n 1 11/113 (9.7%) 9/117 (7.7%) 15/123 (12.2%)\n 2 15/119 (12.6%) 23/123 (18.7%) 16/127 (12.6%)\n 3 15/127 (11.8%) 22/128 (17.2%) 14/128 (10.9%)\n 4 17/130 (13.1%) 10/131 (7.6%) 18/130 (13.8%)\n Any 58/130 (44.6%) 64/131 (48.9%) 63/130 (48.5%)\nCRP \n High \n 1 18/114 (15.8%) 18/112 (16.1%) 19/115 (16.5%)\n 2 20/122 (16.4%) 13/122 (10.7%) 14/122 (11.5%)\n 3 23/124 (18.5%) 14/128 (10.9%) 20/129 (15.5%)\n 4 12/131 (9.2%) 20/132 (15.2%) 11/132 (8.3%) \n Any 73/131 (55.7%) 65/132 (49.2%) 64/132 (48.5%)\n Low \n 1 20/119 (16.8%) 18/113 (15.9%) 11/112 (9.8%) \n 2 24/122 (19.7%) 21/118 (17.8%) 17/121 (14%) \n 3 26/127 (20.5%) 20/127 (15.7%) 22/123 (17.9%)\n 4 10/131 (7.6%) 16/132 (12.1%) 21/130 (16.2%)\n Any 80/131 (61.1%) 75/132 (56.8%) 71/130 (54.6%)\nIGA \n High \n 1 18/119 (15.1%) 11/116 (9.5%) 15/113 (13.3%)\n 2 15/124 (12.1%) 23/120 (19.2%) 19/115 (16.5%)\n 3 21/128 (16.4%) 21/124 (16.9%) 20/120 (16.7%)\n 4 12/132 (9.1%) 12/129 (9.3%) 9/131 (6.9%) \n Any 66/132 (50%) 67/129 (51.9%) 63/131 (48.1%)\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadlb <- adlb %>%\n mutate(\n GRADDR = case_when(\n PARAMCD == \"ALT\" ~ \"L\",\n PARAMCD == \"CRP\" ~ \"B\",\n PARAMCD == \"IGA\" ~ \"H\"\n )\n ) %>%\n filter(SAFFL == \"Y\" & ONTRTFL == \"Y\" & GRADDR != \"\")\n\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\ndf <- h_adlb_worsen(\n adlb,\n worst_flag_low = c(\"WGRLOFL\" = \"Y\"),\n worst_flag_high = c(\"WGRHIFL\" = \"Y\"),\n direction_var = \"GRADDR\"\n)\n\nattributes(df$GRADDR) <- list(\"label\" = \"Direction of Abnormality\")", "crumbs": [ "Tables", "Lab Results", @@ -1249,7 +1249,7 @@ "href": "tables/lab-results/lbt08.html#reproducibility", "title": "LBT08", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:56:37 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:52:39 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -1285,7 +1285,7 @@ "href": "tables/lab-results/lbt11_bl.html#reproducibility", "title": "LBT11_BL", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:56:05 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] 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RSPM\n later 1.4.0 2024-11-26 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.1 2024-11-26 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] 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file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:52:06 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN 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recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -1321,7 +1321,7 @@ "href": "tables/lab-results/lbt03.html#reproducibility", "title": "LBT03", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:55:20 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 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0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -1333,7 +1333,7 @@ "href": "tables/lab-results/lbt15.html#output", "title": "LBT15", "section": "Output", - "text": "Output\n\n\nStandard Table\nTable Modifying Cut Point\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Argument exclude_base_abn must be TRUE to include patients with normal or abnormal in the opposite\n# direction in the denom.\n# So for \"High\" direction, subjects with baseline grade 3-4 are not in the denom.\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ARM\") %>%\n add_overall_col(\"All Patients\") %>%\n split_rows_by(\n \"PARCAT1\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb$PARCAT1)\n ) %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb$PARAM)\n ) %>%\n count_abnormal(\n var = \"ANRIND\",\n abnormal = list(Low = \"LOW\", High = \"HIGH\"),\n variables = list(id = \"USUBJID\", baseline = \"BNRIND\"),\n exclude_base_abn = TRUE,\n .indent_mods = 4L\n ) %>%\n append_topleft(\" Direction of Abnormality\")\n\nresult <- build_table(lyt, adlb, alt_counts_df = adsl)\nresult\n\n \n Parameter A: Drug X B: Placebo C: Combination All Patients \n Direction of Abnormality (N=134) (N=134) (N=132) (N=400) \n———————————————————————————————————————————————————————————————————————————————————————————————————————————\nCHEMISTRY \n Alanine Aminotransferase Measurement \n Low 32/127 (25.2%) 32/128 (25%) 32/128 (25%) 96/383 (25.1%) \n High 0/134 0/134 0/132 0/400 \n C-Reactive Protein Measurement \n Low 36/127 (28.3%) 36/127 (28.3%) 42/123 (34.1%) 114/377 (30.2%)\n High 34/124 (27.4%) 33/128 (25.8%) 31/129 (24%) 98/381 (25.7%) \nIMMUNOLOGY \n Immunoglobulin A Measurement \n Low 0/134 0/134 0/132 0/400 \n High 33/128 (25.8%) 32/124 (25.8%) 28/120 (23.3%) 93/372 (25%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, adlb_alt_cut, alt_counts_df = adsl)\nresult\n\n \n Parameter A: Drug X B: Placebo C: Combination All Patients \n Direction of Abnormality (N=134) (N=134) (N=132) (N=400) \n———————————————————————————————————————————————————————————————————————————————————————————————————————————\nCHEMISTRY \n Alanine Aminotransferase Measurement \n Low 46/119 (38.7%) 54/123 (43.9%) 47/127 (37%) 147/369 (39.8%)\n High 0/134 0/134 0/132 0/400 \n C-Reactive Protein Measurement \n Low 59/122 (48.4%) 56/118 (47.5%) 58/121 (47.9%) 173/361 (47.9%)\n High 54/122 (44.3%) 46/122 (37.7%) 44/122 (36.1%) 144/366 (39.3%)\nIMMUNOLOGY \n Immunoglobulin A Measurement \n Low 0/134 0/134 0/132 0/400 \n High 47/124 (37.9%) 54/120 (45%) 47/115 (40.9%) 148/359 (41.2%)\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nBecause the random.cdisc.data dataset adlb doesn’t have the PARCAT1 variable, this variable is created from LBCAT in pre-processing.\n\nCodelibrary(tern)\nlibrary(dplyr)\nlibrary(forcats)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadlb <- adlb %>%\n mutate(\n PARAM = with_label(.data$PARAM, \"Laboratory Test\"),\n ANRIND = with_label(.data$ANRIND, \"Direction of Abnormality\")\n ) %>%\n mutate(\n PARCAT1 = LBCAT\n ) %>%\n mutate(\n ANRIND = fct_collapse(.data$ATOXGR,\n \"LOW\" = c(\"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-2\", \"-1\", \"0\", \"1\", \"2\"),\n \"HIGH\" = c(\"3\", \"4\")\n ),\n BNRIND = fct_collapse(.data$BTOXGR,\n \"LOW\" = c(\"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-2\", \"-1\", \"0\", \"1\", \"2\"),\n \"HIGH\" = c(\"3\", \"4\")\n ),\n PARCAT1 = LBCAT\n ) %>%\n filter(ONTRTFL == \"Y\")\n\n\nadlb_alt_cut <- adlb %>%\n mutate(\n ANRIND = fct_collapse(.data$ATOXGR,\n \"LOW\" = c(\"-2\", \"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-1\", \"0\", \"1\"),\n \"HIGH\" = c(\"2\", \"3\", \"4\")\n ),\n BNRIND = fct_collapse(.data$BTOXGR,\n \"LOW\" = c(\"-2\", \"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-1\", \"0\", \"1\"),\n \"HIGH\" = c(\"2\", \"3\", \"4\")\n )\n ) %>%\n filter(ONTRTFL == \"Y\")\n\nadlb <- adlb %>% var_relabel(\n PARCAT1 = \"Category for Lab Test\",\n PARAM = \"Parameter\"\n)", + "text": "Output\n\n\nStandard Table\nTable Modifying Cut Point\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Argument exclude_base_abn must be TRUE to include patients with normal or abnormal in the opposite\n# direction in the denom.\n# So for \"High\" direction, subjects with baseline grade 3-4 are not in the denom.\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(var = \"ARM\") %>%\n add_overall_col(\"All Patients\") %>%\n split_rows_by(\n \"PARCAT1\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb$PARCAT1)\n ) %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels, label_pos = \"topleft\", split_label = obj_label(adlb$PARAM)\n ) %>%\n count_abnormal(\n var = \"ANRIND\",\n abnormal = list(Low = \"LOW\", High = \"HIGH\"),\n variables = list(id = \"USUBJID\", baseline = \"BNRIND\"),\n exclude_base_abn = TRUE,\n .indent_mods = 4L\n ) %>%\n append_topleft(\" Direction of Abnormality\")\n\nresult <- build_table(lyt, adlb, alt_counts_df = adsl)\nresult\n\nCategory for Lab Test \n Parameter A: Drug X B: Placebo C: Combination All Patients \n Direction of Abnormality (N=134) (N=134) (N=132) (N=400) \n———————————————————————————————————————————————————————————————————————————————————————————————————————————\nCHEMISTRY \n Alanine Aminotransferase Measurement \n Low 32/127 (25.2%) 32/128 (25%) 32/128 (25%) 96/383 (25.1%) \n High 0/134 0/134 0/132 0/400 \n C-Reactive Protein Measurement \n Low 36/127 (28.3%) 36/127 (28.3%) 42/123 (34.1%) 114/377 (30.2%)\n High 34/124 (27.4%) 33/128 (25.8%) 31/129 (24%) 98/381 (25.7%) \nIMMUNOLOGY \n Immunoglobulin A Measurement \n Low 0/134 0/134 0/132 0/400 \n High 33/128 (25.8%) 32/124 (25.8%) 28/120 (23.3%) 93/372 (25%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, adlb_alt_cut, alt_counts_df = adsl)\nresult\n\nCategory for Lab Test \n Parameter A: Drug X B: Placebo C: Combination All Patients \n Direction of Abnormality (N=134) (N=134) (N=132) (N=400) \n———————————————————————————————————————————————————————————————————————————————————————————————————————————\nCHEMISTRY \n Alanine Aminotransferase Measurement \n Low 46/119 (38.7%) 54/123 (43.9%) 47/127 (37%) 147/369 (39.8%)\n High 0/134 0/134 0/132 0/400 \n C-Reactive Protein Measurement \n Low 59/122 (48.4%) 56/118 (47.5%) 58/121 (47.9%) 173/361 (47.9%)\n High 54/122 (44.3%) 46/122 (37.7%) 44/122 (36.1%) 144/366 (39.3%)\nIMMUNOLOGY \n Immunoglobulin A Measurement \n Low 0/134 0/134 0/132 0/400 \n High 47/124 (37.9%) 54/120 (45%) 47/115 (40.9%) 148/359 (41.2%)\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nBecause the random.cdisc.data dataset adlb doesn’t have the PARCAT1 variable, this variable is created from LBCAT in pre-processing.\n\nCodelibrary(tern)\nlibrary(dplyr)\nlibrary(forcats)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadlb <- adlb %>%\n mutate(\n PARAM = with_label(.data$PARAM, \"Laboratory Test\"),\n ANRIND = with_label(.data$ANRIND, \"Direction of Abnormality\")\n ) %>%\n mutate(\n PARCAT1 = LBCAT\n ) %>%\n mutate(\n ANRIND = fct_collapse(.data$ATOXGR,\n \"LOW\" = c(\"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-2\", \"-1\", \"0\", \"1\", \"2\"),\n \"HIGH\" = c(\"3\", \"4\")\n ),\n BNRIND = fct_collapse(.data$BTOXGR,\n \"LOW\" = c(\"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-2\", \"-1\", \"0\", \"1\", \"2\"),\n \"HIGH\" = c(\"3\", \"4\")\n ),\n PARCAT1 = LBCAT\n ) %>%\n filter(ONTRTFL == \"Y\")\n\n\nadlb_alt_cut <- adlb %>%\n mutate(\n ANRIND = fct_collapse(.data$ATOXGR,\n \"LOW\" = c(\"-2\", \"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-1\", \"0\", \"1\"),\n \"HIGH\" = c(\"2\", \"3\", \"4\")\n ),\n BNRIND = fct_collapse(.data$BTOXGR,\n \"LOW\" = c(\"-2\", \"-3\", \"-4\"),\n \"MODERATE/NORMAL\" = c(\"-1\", \"0\", \"1\"),\n \"HIGH\" = c(\"2\", \"3\", \"4\")\n )\n ) %>%\n filter(ONTRTFL == \"Y\")\n\nadlb <- adlb %>% var_relabel(\n PARCAT1 = \"Category for Lab Test\",\n PARAM = \"Parameter\"\n)", "crumbs": [ "Tables", "Lab Results", @@ -1357,7 +1357,7 @@ "href": "tables/lab-results/lbt15.html#reproducibility", "title": "LBT15", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:54:50 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats * 1.0.0 2023-01-29 [1] RSPM\n 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[1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:50:50 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ 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recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -1417,7 +1417,7 @@ "href": "tables/lab-results/lbt09.html#reproducibility", "title": "LBT09", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:53:56 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n 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os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 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"Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:52:08 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 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"Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:48:07 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 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RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.2 2024-11-28 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9091 2024-11-30 [1] https://p~\n teal.code * 0.5.0.9020 2024-11-30 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-30 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-30 [1] https://p~\n teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr * 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Demography", @@ -1525,7 +1525,7 @@ "href": "tables/disclosures/eudrat02.html#output", "title": "EUDRAT02", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table() %>%\n summarize_patients_events_in_cols(\n filters_list = filters_list,\n empty_stats = c(\"all\", \"related\", \"fatal\", \"fatal_related\"),\n custom_label = \"Total number of patients with at least one serious adverse event\"\n ) %>%\n split_rows_by(\"AEBODSYS\",\n nested = FALSE,\n split_fun = split_fun,\n indent_mod = -1L,\n label_pos = \"topleft\",\n split_label = obj_label(adae_serious_arm$AEBODSYS)\n ) %>%\n split_rows_by(\"AEDECOD\",\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae_serious_arm$AEDECOD)\n ) %>%\n summarize_patients_events_in_cols(\n filters_list = filters_list,\n col_split = FALSE\n )\n\nresult <- build_table(lyt, adae_serious_arm)\nresult\n\n \n Dictionary-Derived Term Patients (All) Events (All) Events (Related) Events (Fatal) Events (Fatal & Related)\n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one serious adverse event 104 \ncl A.1 \n dcd A.1.1.1.2 48 68 0 0 0 \ncl B.1 \n dcd B.1.1.1.1 47 56 56 56 56 \ncl B.2 \n dcd B.2.2.3.1 48 64 0 0 0 \ncl D.1 \n dcd D.1.1.1.1 50 61 61 61 61 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nFor illustrative purposes, the adae data is filtered by arm A: Drug X here.\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadae <- df_explicit_na(adae)\n\nadae_serious <- adae %>% filter(AESER == \"Y\", SAFFL == \"Y\")\nadae_serious_arm <- adae_serious %>% filter(ARM == \"A: Drug X\")\n\nfilters_list <- list(\n related = with_label(c(AEREL = \"Y\"), \"Events (Related)\"),\n fatal = with_label(c(AESDTH = \"Y\"), \"Events (Fatal)\"),\n fatal_related = with_label(c(AEREL = \"Y\", AESDTH = \"Y\"), \"Events (Fatal & Related)\")\n)", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table() %>%\n summarize_patients_events_in_cols(\n filters_list = filters_list,\n empty_stats = c(\"all\", \"related\", \"fatal\", \"fatal_related\"),\n custom_label = \"Total number of patients with at least one serious adverse event\"\n ) %>%\n split_rows_by(\"AEBODSYS\",\n nested = FALSE,\n split_fun = split_fun,\n indent_mod = -1L,\n label_pos = \"topleft\",\n split_label = obj_label(adae_serious_arm$AEBODSYS)\n ) %>%\n split_rows_by(\"AEDECOD\",\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adae_serious_arm$AEDECOD)\n ) %>%\n summarize_patients_events_in_cols(\n filters_list = filters_list,\n col_split = FALSE\n )\n\nresult <- build_table(lyt, adae_serious_arm)\nresult\n\nBody System or Organ Class \n Dictionary-Derived Term Patients (All) Events (All) Events (Related) Events (Fatal) Events (Fatal & Related)\n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one serious adverse event 104 \ncl A.1 \n dcd A.1.1.1.2 48 68 0 0 0 \ncl B.1 \n dcd B.1.1.1.1 47 56 56 56 56 \ncl B.2 \n dcd B.2.2.3.1 48 64 0 0 0 \ncl D.1 \n dcd D.1.1.1.1 50 61 61 61 61 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nFor illustrative purposes, the adae data is filtered by arm A: Drug X here.\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadae <- df_explicit_na(adae)\n\nadae_serious <- adae %>% filter(AESER == \"Y\", SAFFL == \"Y\")\nadae_serious_arm <- adae_serious %>% filter(ARM == \"A: Drug X\")\n\nfilters_list <- list(\n related = with_label(c(AEREL = \"Y\"), \"Events (Related)\"),\n fatal = with_label(c(AESDTH = \"Y\"), \"Events (Fatal)\"),\n fatal_related = with_label(c(AEREL = \"Y\", AESDTH = \"Y\"), \"Events (Fatal & Related)\")\n)", "crumbs": [ "Tables", "Disclosures", @@ -1537,7 +1537,7 @@ "href": "tables/disclosures/eudrat02.html#reproducibility", "title": "EUDRAT02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:51:41 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 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"Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:47:39 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 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generate this website.\nDownload", "crumbs": [ "Tables", "Disclosures", @@ -1573,7 +1573,7 @@ "href": "tables/vital-signs/vst01.html#reproducibility", "title": "VST01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:51:22 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n 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/usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Efficacy", @@ -1789,7 +1789,7 @@ "href": "tables/efficacy/coxt02.html#reproducibility", "title": "COXT02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:46:39 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n abind 1.4-8 2024-09-12 [1] RSPM\n backports 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2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9091 2024-11-30 [1] https://p~\n teal.code * 0.5.0.9020 2024-11-30 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-30 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-30 [1] https://p~\n teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Efficacy", @@ -1801,7 +1801,7 @@ "href": "tables/efficacy/cfbt01.html#output", "title": "CFBT01", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeafun <- function(x, .var, .spl_context, ...) {\n n_fun <- sum(!is.na(x), na.rm = TRUE)\n if (n_fun == 0) {\n mean_sd_fun <- c(NA, NA)\n median_fun <- NA\n min_max_fun <- c(NA, NA)\n } else {\n mean_sd_fun <- c(mean(x, na.rm = TRUE), sd(x, na.rm = TRUE))\n median_fun <- median(x, na.rm = TRUE)\n min_max_fun <- c(min(x), max(x))\n }\n is_chg <- .var == \"CHG\"\n is_baseline <- .spl_context$value[which(.spl_context$split == \"AVISIT\")] == \"BASELINE\"\n if (is_baseline && is_chg) n_fun <- mean_sd_fun <- median_fun <- min_max_fun <- NULL\n\n in_rows(\n \"n\" = n_fun,\n \"Mean (SD)\" = mean_sd_fun,\n \"Median\" = median_fun,\n \"Min - Max\" = min_max_fun,\n .formats = list(\"n\" = \"xx\", \"Mean (SD)\" = \"xx.xx (xx.xx)\", \"Median\" = \"xx.xx\", \"Min - Max\" = \"xx.xx - xx.xx\"),\n .format_na_strs = list(\"n\" = \"NE\", \"Mean (SD)\" = \"NE (NE)\", \"Median\" = \"NE\", \"Min - Max\" = \"NE - NE\")\n )\n}\n\nlyt <- basic_table() %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adqs$PARAM)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adqs$AVISIT)\n ) %>%\n split_cols_by_multivar(\n vars = c(\"AVAL\", \"CHG\"),\n varlabels = c(\"Value at Visit\", \"Change from\\nBaseline\")\n ) %>%\n analyze_colvars(afun = afun)\n\nresult <- build_table(lyt, adqs)\nresult\n\n A: Drug X B: Placebo C: Combination \n Change from Change from Change from \n Analysis Visit Value at Visit Baseline Value at Visit Baseline Value at Visit Baseline \n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nBFI All Questions \n BASELINE \n n 134 134 132 \n Mean (SD) 49.93 (7.44) 49.74 (8.29) 50.30 (9.06) \n Median 48.69 49.28 49.74 \n Min - Max 33.72 - 65.91 25.82 - 71.47 26.04 - 69.99 \n WEEK 1 DAY 8 \n n 134 134 134 134 132 132 \n Mean (SD) 54.51 (8.61) 4.58 (11.23) 56.33 (7.86) 6.59 (11.81) 54.03 (8.31) 3.72 (12.66) \n Median 55.15 5.47 56.39 6.96 53.76 3.71 \n Min - Max 34.26 - 75.42 -25.52 - 29.68 36.82 - 74.45 -25.10 - 31.05 26.89 - 75.95 -26.81 - 33.75\n WEEK 2 DAY 15 \n n 134 134 134 134 132 132 \n Mean (SD) 60.98 (10.31) 11.05 (12.46) 59.68 (9.59) 9.94 (12.84) 60.11 (8.76) 9.80 (12.59) \n Median 60.60 10.45 58.18 8.95 61.08 10.04 \n Min - Max 35.94 - 96.53 -14.02 - 45.01 40.44 - 84.70 -17.59 - 40.52 32.76 - 78.25 -26.57 - 39.56\n WEEK 3 DAY 22 \n n 134 134 134 134 132 132 \n Mean (SD) 64.64 (9.88) 14.72 (11.99) 65.78 (10.17) 16.04 (13.80) 63.65 (10.50) 13.35 (13.39) \n Median 65.21 15.10 66.28 15.49 63.79 12.24 \n Min - Max 40.49 - 95.35 -16.76 - 43.40 42.16 - 92.32 -17.70 - 46.85 29.29 - 88.41 -22.40 - 39.94\n WEEK 4 DAY 29 \n n 134 134 134 134 132 132 \n Mean (SD) 69.43 (11.12) 19.51 (13.83) 69.79 (11.46) 20.05 (14.38) 70.68 (10.23) 20.37 (12.99) \n Median 69.22 19.90 70.37 20.99 70.85 20.94 \n Min - Max 38.38 - 95.48 -17.34 - 49.18 45.79 - 93.33 -19.66 - 58.05 30.53 - 90.61 -14.01 - 60.23\n WEEK 5 DAY 36 \n n 134 134 134 134 132 132 \n Mean (SD) 74.31 (12.44) 24.38 (14.75) 74.73 (12.96) 24.99 (14.67) 75.89 (13.54) 25.59 (17.18) \n Median 76.12 25.20 74.13 22.81 76.70 25.32 \n Min - Max 39.45 - 103.92 -7.53 - 56.23 38.19 - 109.61 -18.42 - 64.15 43.79 - 102.40 -16.11 - 67.78\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadqs <- random.cdisc.data::cadqs\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadqs <- df_explicit_na(adqs)\n\n# This example focuses on \"BFI All Questions\" starting from baseline.\nadqs <- adqs %>%\n dplyr::filter(\n PARAM == \"BFI All Questions\",\n AVISIT != \"SCREENING\"\n )\n\n# Define the split function for AVISIT\nsplit_fun <- drop_split_levels", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeafun <- function(x, .var, .spl_context, ...) {\n n_fun <- sum(!is.na(x), na.rm = TRUE)\n if (n_fun == 0) {\n mean_sd_fun <- c(NA, NA)\n median_fun <- NA\n min_max_fun <- c(NA, NA)\n } else {\n mean_sd_fun <- c(mean(x, na.rm = TRUE), sd(x, na.rm = TRUE))\n median_fun <- median(x, na.rm = TRUE)\n min_max_fun <- c(min(x), max(x))\n }\n is_chg <- .var == \"CHG\"\n is_baseline <- .spl_context$value[which(.spl_context$split == \"AVISIT\")] == \"BASELINE\"\n if (is_baseline && is_chg) n_fun <- mean_sd_fun <- median_fun <- min_max_fun <- NULL\n\n in_rows(\n \"n\" = n_fun,\n \"Mean (SD)\" = mean_sd_fun,\n \"Median\" = median_fun,\n \"Min - Max\" = min_max_fun,\n .formats = list(\"n\" = \"xx\", \"Mean (SD)\" = \"xx.xx (xx.xx)\", \"Median\" = \"xx.xx\", \"Min - Max\" = \"xx.xx - xx.xx\"),\n .format_na_strs = list(\"n\" = \"NE\", \"Mean (SD)\" = \"NE (NE)\", \"Median\" = \"NE\", \"Min - Max\" = \"NE - NE\")\n )\n}\n\nlyt <- basic_table() %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adqs$PARAM)\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adqs$AVISIT)\n ) %>%\n split_cols_by_multivar(\n vars = c(\"AVAL\", \"CHG\"),\n varlabels = c(\"Value at Visit\", \"Change from\\nBaseline\")\n ) %>%\n analyze_colvars(afun = afun)\n\nresult <- build_table(lyt, adqs)\nresult\n\n A: Drug X B: Placebo C: Combination \nParameter Change from Change from Change from \n Analysis Visit Value at Visit Baseline Value at Visit Baseline Value at Visit Baseline \n———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nBFI All Questions \n BASELINE \n n 134 134 132 \n Mean (SD) 49.93 (7.44) 49.74 (8.29) 50.30 (9.06) \n Median 48.69 49.28 49.74 \n Min - Max 33.72 - 65.91 25.82 - 71.47 26.04 - 69.99 \n WEEK 1 DAY 8 \n n 134 134 134 134 132 132 \n Mean (SD) 54.51 (8.61) 4.58 (11.23) 56.33 (7.86) 6.59 (11.81) 54.03 (8.31) 3.72 (12.66) \n Median 55.15 5.47 56.39 6.96 53.76 3.71 \n Min - Max 34.26 - 75.42 -25.52 - 29.68 36.82 - 74.45 -25.10 - 31.05 26.89 - 75.95 -26.81 - 33.75\n WEEK 2 DAY 15 \n n 134 134 134 134 132 132 \n Mean (SD) 60.98 (10.31) 11.05 (12.46) 59.68 (9.59) 9.94 (12.84) 60.11 (8.76) 9.80 (12.59) \n Median 60.60 10.45 58.18 8.95 61.08 10.04 \n Min - Max 35.94 - 96.53 -14.02 - 45.01 40.44 - 84.70 -17.59 - 40.52 32.76 - 78.25 -26.57 - 39.56\n WEEK 3 DAY 22 \n n 134 134 134 134 132 132 \n Mean (SD) 64.64 (9.88) 14.72 (11.99) 65.78 (10.17) 16.04 (13.80) 63.65 (10.50) 13.35 (13.39) \n Median 65.21 15.10 66.28 15.49 63.79 12.24 \n Min - Max 40.49 - 95.35 -16.76 - 43.40 42.16 - 92.32 -17.70 - 46.85 29.29 - 88.41 -22.40 - 39.94\n WEEK 4 DAY 29 \n n 134 134 134 134 132 132 \n Mean (SD) 69.43 (11.12) 19.51 (13.83) 69.79 (11.46) 20.05 (14.38) 70.68 (10.23) 20.37 (12.99) \n Median 69.22 19.90 70.37 20.99 70.85 20.94 \n Min - Max 38.38 - 95.48 -17.34 - 49.18 45.79 - 93.33 -19.66 - 58.05 30.53 - 90.61 -14.01 - 60.23\n WEEK 5 DAY 36 \n n 134 134 134 134 132 132 \n Mean (SD) 74.31 (12.44) 24.38 (14.75) 74.73 (12.96) 24.99 (14.67) 75.89 (13.54) 25.59 (17.18) \n Median 76.12 25.20 74.13 22.81 76.70 25.32 \n Min - Max 39.45 - 103.92 -7.53 - 56.23 38.19 - 109.61 -18.42 - 64.15 43.79 - 102.40 -16.11 - 67.78\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadqs <- random.cdisc.data::cadqs\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadqs <- df_explicit_na(adqs)\n\n# This example focuses on \"BFI All Questions\" starting from baseline.\nadqs <- adqs %>%\n dplyr::filter(\n PARAM == \"BFI All Questions\",\n AVISIT != \"SCREENING\"\n )\n\n# Define the split function for AVISIT\nsplit_fun <- drop_split_levels", "crumbs": [ "Tables", "Efficacy", @@ -1825,7 +1825,7 @@ "href": "tables/efficacy/cfbt01.html#reproducibility", "title": "CFBT01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:46:10 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n data.table 1.16.2 2024-10-10 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n httr 1.4.7 2023-08-15 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.0 2024-11-26 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lazyeval 0.2.2 2019-03-15 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n 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scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9090 2024-11-27 [1] https://p~\n teal.code * 0.5.0.9019 2024-11-27 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-27 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-27 [1] https://p~\n teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n viridisLite 0.4.2 2023-05-02 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:42:05 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n data.table 1.16.2 2024-10-10 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"crumbs": [ "Graphs", "Pharmacokinetic", @@ -1957,7 +1957,7 @@ "href": "graphs/pharmacokinetic/pkcg03.html#reproducibility", "title": "PKCG03", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:43:49 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 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"text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:37:43 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 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file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Graphs", "Other", @@ -2137,7 +2137,7 @@ "href": "graphs/efficacy/mmrmg02.html#reproducibility", "title": "MMRMG02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:41:05 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 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.lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:37:03 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n cowplot 1.1.3 2024-01-22 [1] RSPM\n 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website.\nDownload", "crumbs": [ "Graphs", "Efficacy", @@ -2305,7 +2305,7 @@ "href": "graphs/efficacy/fstg01.html#reproducibility", "title": "FSTG01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:39:26 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 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renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Graphs", "Other", @@ -2461,7 +2461,7 @@ "href": "graphs/pharmacokinetic/pkpg04.html#reproducibility", "title": "PKPG04", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:43:11 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 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generate this website.\nDownload", "crumbs": [ "Graphs", "Pharmacokinetic", @@ -2509,7 +2509,7 @@ "href": "graphs/pharmacokinetic/pkpg02.html#reproducibility", "title": "PKPG02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:43:42 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 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generate this website.\nDownload", "crumbs": [ "Graphs", "Pharmacokinetic", @@ -2580,7 +2580,7 @@ "href": "tables/efficacy/cmht01.html#reproducibility", "title": "CMHT01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:45:02 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n 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environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:42:48 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 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2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Efficacy", @@ -2736,7 +2736,7 @@ "href": "tables/efficacy/onct05.html#reproducibility", "title": "ONCT05", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:49:32 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n cowplot 1.1.3 2024-01-22 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n 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1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9090 2024-11-27 [1] https://p~\n teal.code * 0.5.0.9019 2024-11-27 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-27 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-27 [1] https://p~\n teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n textshaping 0.4.0 2024-05-24 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:45:28 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n cowplot 1.1.3 2024-01-22 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n 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2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.2 2024-11-28 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n ragg 1.3.3 2024-09-11 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] 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"Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:47:48 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 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it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Disclosures", @@ -2880,7 +2880,7 @@ "href": "tables/risk-management-plan/rmpt01.html#reproducibility", "title": "RMPT01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:52:29 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n 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RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:50:01 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -2988,7 +2988,7 @@ "href": "tables/lab-results/lbt06.html#output", "title": "LBT06", "section": "Output", - "text": "Output\n\n\nStandard Table for Single Lab Test\nStandard Table for Multiple Lab Tests\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\"AVISIT\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adlb_f_crp$AVISIT)) %>%\n count_abnormal_by_baseline(\n \"ANRIND\",\n abnormal = c(Low = \"LOW\", High = \"HIGH\"),\n .indent_mods = 4L\n ) %>%\n append_varlabels(adlb_f_crp, \"ANRIND\", indent = 1L) %>%\n append_topleft(\" Baseline Status\")\n\nresult <- build_table(\n lyt = lyt,\n df = adlb_f_crp,\n alt_counts_df = adsl\n) %>%\n trim_rows()\n\nresult\n\n \n Analysis Reference Range Indicator A: Drug X B: Placebo C: Combination\n Baseline Status (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————————————————\nWEEK 1 DAY 8 \n Low \n Not low 16/119 (13.4%) 22/113 (19.5%) 24/112 (21.4%)\n Low 2/15 (13.3%) 2/21 (9.5%) 7/20 (35%) \n Total 18/134 (13.4%) 24/134 (17.9%) 31/132 (23.5%)\n High \n Not high 21/114 (18.4%) 20/112 (17.9%) 17/115 (14.8%)\n High 2/20 (10%) 4/22 (18.2%) 3/17 (17.6%) \n Total 23/134 (17.2%) 24/134 (17.9%) 20/132 (15.2%)\nWEEK 2 DAY 15 \n Low \n Not low 26/119 (21.8%) 20/113 (17.7%) 12/112 (10.7%)\n Low 2/15 (13.3%) 3/21 (14.3%) 4/20 (20%) \n Total 28/134 (20.9%) 23/134 (17.2%) 16/132 (12.1%)\n High \n Not high 15/114 (13.2%) 17/112 (15.2%) 15/115 (13%) \n High 2/20 (10%) 4/22 (18.2%) 4/17 (23.5%) \n Total 17/134 (12.7%) 21/134 (15.7%) 19/132 (14.4%)\nWEEK 3 DAY 22 \n Low \n Not low 15/119 (12.6%) 21/113 (18.6%) 18/112 (16.1%)\n Low 0/15 3/21 (14.3%) 0/20 \n Total 15/134 (11.2%) 24/134 (17.9%) 18/132 (13.6%)\n High \n Not high 22/114 (19.3%) 18/112 (16.1%) 17/115 (14.8%)\n High 2/20 (10%) 5/22 (22.7%) 1/17 (5.9%) \n Total 24/134 (17.9%) 23/134 (17.2%) 18/132 (13.6%)\nWEEK 4 DAY 29 \n Low \n Not low 30/119 (25.2%) 13/113 (11.5%) 16/112 (14.3%)\n Low 3/15 (20%) 2/21 (9.5%) 5/20 (25%) \n Total 33/134 (24.6%) 15/134 (11.2%) 21/132 (15.9%)\n High \n Not high 17/114 (14.9%) 11/112 (9.8%) 16/115 (13.9%)\n High 2/20 (10%) 6/22 (27.3%) 3/17 (17.6%) \n Total 19/134 (14.2%) 17/134 (12.7%) 19/132 (14.4%)\nWEEK 5 DAY 36 \n Low \n Not low 17/119 (14.3%) 19/113 (16.8%) 16/112 (14.3%)\n Low 2/15 (13.3%) 3/21 (14.3%) 5/20 (25%) \n Total 19/134 (14.2%) 22/134 (16.4%) 21/132 (15.9%)\n High \n Not high 19/114 (16.7%) 17/112 (15.2%) 11/115 (9.6%) \n High 4/20 (20%) 6/22 (27.3%) 2/17 (11.8%) \n Total 23/134 (17.2%) 23/134 (17.2%) 13/132 (9.8%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# The following code generates one large table for multiple lab tests.\n# If separate tables are needed for each lab test per GDSR standard, use the code for \"single lab test\".\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\"PARAM\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adlb_f$PARAM)) %>%\n split_rows_by(\"AVISIT\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adlb_f$AVISIT)) %>%\n count_abnormal_by_baseline(\n \"ANRIND\",\n abnormal = c(Low = \"LOW\", High = \"HIGH\"),\n .indent_mods = 4L\n ) %>%\n append_varlabels(adlb_f, \"ANRIND\", indent = 2L) %>%\n append_topleft(\" Baseline Status\")\n\nresult <- build_table(\n lyt = lyt,\n df = adlb_f,\n alt_counts_df = adsl\n) %>%\n trim_rows()\n\nresult\n\n \n Visit \n Analysis Reference Range Indicator A: Drug X B: Placebo C: Combination\n Baseline Status (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n WEEK 1 DAY 8 \n Low \n Not low 19/113 (16.8%) 13/117 (11.1%) 14/123 (11.4%)\n Low 2/21 (9.5%) 1/17 (5.9%) 1/9 (11.1%) \n Total 21/134 (15.7%) 14/134 (10.4%) 15/132 (11.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 2 DAY 15 \n Low \n Not low 17/113 (15%) 13/117 (11.1%) 13/123 (10.6%)\n Low 2/21 (9.5%) 2/17 (11.8%) 4/9 (44.4%) \n Total 19/134 (14.2%) 15/134 (11.2%) 17/132 (12.9%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 3 DAY 22 \n Low \n Not low 10/113 (8.8%) 20/117 (17.1%) 21/123 (17.1%)\n Low 4/21 (19%) 4/17 (23.5%) 2/9 (22.2%) \n Total 14/134 (10.4%) 24/134 (17.9%) 23/132 (17.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 4 DAY 29 \n Low \n Not low 15/113 (13.3%) 19/117 (16.2%) 18/123 (14.6%)\n Low 2/21 (9.5%) 3/17 (17.6%) 1/9 (11.1%) \n Total 17/134 (12.7%) 22/134 (16.4%) 19/132 (14.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 5 DAY 36 \n Low \n Not low 17/113 (15%) 23/117 (19.7%) 18/123 (14.6%)\n Low 0/21 1/17 (5.9%) 1/9 (11.1%) \n Total 17/134 (12.7%) 24/134 (17.9%) 19/132 (14.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \nC-Reactive Protein Measurement \n WEEK 1 DAY 8 \n Low \n Not low 16/119 (13.4%) 22/113 (19.5%) 24/112 (21.4%)\n Low 2/15 (13.3%) 2/21 (9.5%) 7/20 (35%) \n Total 18/134 (13.4%) 24/134 (17.9%) 31/132 (23.5%)\n High \n Not high 21/114 (18.4%) 20/112 (17.9%) 17/115 (14.8%)\n High 2/20 (10%) 4/22 (18.2%) 3/17 (17.6%) \n Total 23/134 (17.2%) 24/134 (17.9%) 20/132 (15.2%)\n WEEK 2 DAY 15 \n Low \n Not low 26/119 (21.8%) 20/113 (17.7%) 12/112 (10.7%)\n Low 2/15 (13.3%) 3/21 (14.3%) 4/20 (20%) \n Total 28/134 (20.9%) 23/134 (17.2%) 16/132 (12.1%)\n High \n Not high 15/114 (13.2%) 17/112 (15.2%) 15/115 (13%) \n High 2/20 (10%) 4/22 (18.2%) 4/17 (23.5%) \n Total 17/134 (12.7%) 21/134 (15.7%) 19/132 (14.4%)\n WEEK 3 DAY 22 \n Low \n Not low 15/119 (12.6%) 21/113 (18.6%) 18/112 (16.1%)\n Low 0/15 3/21 (14.3%) 0/20 \n Total 15/134 (11.2%) 24/134 (17.9%) 18/132 (13.6%)\n High \n Not high 22/114 (19.3%) 18/112 (16.1%) 17/115 (14.8%)\n High 2/20 (10%) 5/22 (22.7%) 1/17 (5.9%) \n Total 24/134 (17.9%) 23/134 (17.2%) 18/132 (13.6%)\n WEEK 4 DAY 29 \n Low \n Not low 30/119 (25.2%) 13/113 (11.5%) 16/112 (14.3%)\n Low 3/15 (20%) 2/21 (9.5%) 5/20 (25%) \n Total 33/134 (24.6%) 15/134 (11.2%) 21/132 (15.9%)\n High \n Not high 17/114 (14.9%) 11/112 (9.8%) 16/115 (13.9%)\n High 2/20 (10%) 6/22 (27.3%) 3/17 (17.6%) \n Total 19/134 (14.2%) 17/134 (12.7%) 19/132 (14.4%)\n WEEK 5 DAY 36 \n Low \n Not low 17/119 (14.3%) 19/113 (16.8%) 16/112 (14.3%)\n Low 2/15 (13.3%) 3/21 (14.3%) 5/20 (25%) \n Total 19/134 (14.2%) 22/134 (16.4%) 21/132 (15.9%)\n High \n Not high 19/114 (16.7%) 17/112 (15.2%) 11/115 (9.6%) \n High 4/20 (20%) 6/22 (27.3%) 2/17 (11.8%) \n Total 23/134 (17.2%) 23/134 (17.2%) 13/132 (9.8%) \nImmunoglobulin A Measurement \n WEEK 1 DAY 8 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 18/119 (15.1%) 20/116 (17.2%) 14/113 (12.4%)\n High 1/15 (6.7%) 5/18 (27.8%) 4/19 (21.1%) \n Total 19/134 (14.2%) 25/134 (18.7%) 18/132 (13.6%)\n WEEK 2 DAY 15 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 16/119 (13.4%) 13/116 (11.2%) 12/113 (10.6%)\n High 1/15 (6.7%) 1/18 (5.6%) 2/19 (10.5%) \n Total 17/134 (12.7%) 14/134 (10.4%) 14/132 (10.6%)\n WEEK 3 DAY 22 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 17/119 (14.3%) 15/116 (12.9%) 21/113 (18.6%)\n High 0/15 1/18 (5.6%) 1/19 (5.3%) \n Total 17/134 (12.7%) 16/134 (11.9%) 22/132 (16.7%)\n WEEK 4 DAY 29 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 19/119 (16%) 16/116 (13.8%) 19/113 (16.8%)\n High 4/15 (26.7%) 5/18 (27.8%) 3/19 (15.8%) \n Total 23/134 (17.2%) 21/134 (15.7%) 22/132 (16.7%)\n WEEK 5 DAY 36 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 16/119 (13.4%) 21/116 (18.1%) 20/113 (17.7%)\n High 1/15 (6.7%) 3/18 (16.7%) 0/19 \n Total 17/134 (12.7%) 24/134 (17.9%) 20/132 (15.2%)\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n# Please note that df_explict_na has a na_level argument defaulting to \"<Missing>\",\n# Please don't change the na_level to anything other than NA, empty string or the default \"<Missing>\".\n\nadlb_f <- adlb %>%\n dplyr::filter(ABLFL != \"Y\") %>%\n dplyr::filter(!(AVISIT %in% c(\"SCREENING\", \"BASELINE\"))) %>%\n dplyr::mutate(AVISIT = droplevels(AVISIT)) %>%\n var_relabel(AVISIT = \"Visit\")\n\nadlb_f_crp <- adlb_f %>% dplyr::filter(PARAMCD == \"CRP\")", + "text": "Output\n\n\nStandard Table for Single Lab Test\nStandard Table for Multiple Lab Tests\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Define the split function\nsplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\"AVISIT\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adlb_f_crp$AVISIT)) %>%\n count_abnormal_by_baseline(\n \"ANRIND\",\n abnormal = c(Low = \"LOW\", High = \"HIGH\"),\n .indent_mods = 4L\n ) %>%\n append_varlabels(adlb_f_crp, \"ANRIND\", indent = 1L) %>%\n append_topleft(\" Baseline Status\")\n\nresult <- build_table(\n lyt = lyt,\n df = adlb_f_crp,\n alt_counts_df = adsl\n) %>%\n trim_rows()\n\nresult\n\nVisit \n Analysis Reference Range Indicator A: Drug X B: Placebo C: Combination\n Baseline Status (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————————————————\nWEEK 1 DAY 8 \n Low \n Not low 16/119 (13.4%) 22/113 (19.5%) 24/112 (21.4%)\n Low 2/15 (13.3%) 2/21 (9.5%) 7/20 (35%) \n Total 18/134 (13.4%) 24/134 (17.9%) 31/132 (23.5%)\n High \n Not high 21/114 (18.4%) 20/112 (17.9%) 17/115 (14.8%)\n High 2/20 (10%) 4/22 (18.2%) 3/17 (17.6%) \n Total 23/134 (17.2%) 24/134 (17.9%) 20/132 (15.2%)\nWEEK 2 DAY 15 \n Low \n Not low 26/119 (21.8%) 20/113 (17.7%) 12/112 (10.7%)\n Low 2/15 (13.3%) 3/21 (14.3%) 4/20 (20%) \n Total 28/134 (20.9%) 23/134 (17.2%) 16/132 (12.1%)\n High \n Not high 15/114 (13.2%) 17/112 (15.2%) 15/115 (13%) \n High 2/20 (10%) 4/22 (18.2%) 4/17 (23.5%) \n Total 17/134 (12.7%) 21/134 (15.7%) 19/132 (14.4%)\nWEEK 3 DAY 22 \n Low \n Not low 15/119 (12.6%) 21/113 (18.6%) 18/112 (16.1%)\n Low 0/15 3/21 (14.3%) 0/20 \n Total 15/134 (11.2%) 24/134 (17.9%) 18/132 (13.6%)\n High \n Not high 22/114 (19.3%) 18/112 (16.1%) 17/115 (14.8%)\n High 2/20 (10%) 5/22 (22.7%) 1/17 (5.9%) \n Total 24/134 (17.9%) 23/134 (17.2%) 18/132 (13.6%)\nWEEK 4 DAY 29 \n Low \n Not low 30/119 (25.2%) 13/113 (11.5%) 16/112 (14.3%)\n Low 3/15 (20%) 2/21 (9.5%) 5/20 (25%) \n Total 33/134 (24.6%) 15/134 (11.2%) 21/132 (15.9%)\n High \n Not high 17/114 (14.9%) 11/112 (9.8%) 16/115 (13.9%)\n High 2/20 (10%) 6/22 (27.3%) 3/17 (17.6%) \n Total 19/134 (14.2%) 17/134 (12.7%) 19/132 (14.4%)\nWEEK 5 DAY 36 \n Low \n Not low 17/119 (14.3%) 19/113 (16.8%) 16/112 (14.3%)\n Low 2/15 (13.3%) 3/21 (14.3%) 5/20 (25%) \n Total 19/134 (14.2%) 22/134 (16.4%) 21/132 (15.9%)\n High \n Not high 19/114 (16.7%) 17/112 (15.2%) 11/115 (9.6%) \n High 4/20 (20%) 6/22 (27.3%) 2/17 (11.8%) \n Total 23/134 (17.2%) 23/134 (17.2%) 13/132 (9.8%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# The following code generates one large table for multiple lab tests.\n# If separate tables are needed for each lab test per GDSR standard, use the code for \"single lab test\".\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\"PARAM\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adlb_f$PARAM)) %>%\n split_rows_by(\"AVISIT\", split_fun = split_fun, label_pos = \"topleft\", split_label = obj_label(adlb_f$AVISIT)) %>%\n count_abnormal_by_baseline(\n \"ANRIND\",\n abnormal = c(Low = \"LOW\", High = \"HIGH\"),\n .indent_mods = 4L\n ) %>%\n append_varlabels(adlb_f, \"ANRIND\", indent = 2L) %>%\n append_topleft(\" Baseline Status\")\n\nresult <- build_table(\n lyt = lyt,\n df = adlb_f,\n alt_counts_df = adsl\n) %>%\n trim_rows()\n\nresult\n\nParameter \n Visit \n Analysis Reference Range Indicator A: Drug X B: Placebo C: Combination\n Baseline Status (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n WEEK 1 DAY 8 \n Low \n Not low 19/113 (16.8%) 13/117 (11.1%) 14/123 (11.4%)\n Low 2/21 (9.5%) 1/17 (5.9%) 1/9 (11.1%) \n Total 21/134 (15.7%) 14/134 (10.4%) 15/132 (11.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 2 DAY 15 \n Low \n Not low 17/113 (15%) 13/117 (11.1%) 13/123 (10.6%)\n Low 2/21 (9.5%) 2/17 (11.8%) 4/9 (44.4%) \n Total 19/134 (14.2%) 15/134 (11.2%) 17/132 (12.9%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 3 DAY 22 \n Low \n Not low 10/113 (8.8%) 20/117 (17.1%) 21/123 (17.1%)\n Low 4/21 (19%) 4/17 (23.5%) 2/9 (22.2%) \n Total 14/134 (10.4%) 24/134 (17.9%) 23/132 (17.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 4 DAY 29 \n Low \n Not low 15/113 (13.3%) 19/117 (16.2%) 18/123 (14.6%)\n Low 2/21 (9.5%) 3/17 (17.6%) 1/9 (11.1%) \n Total 17/134 (12.7%) 22/134 (16.4%) 19/132 (14.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n WEEK 5 DAY 36 \n Low \n Not low 17/113 (15%) 23/117 (19.7%) 18/123 (14.6%)\n Low 0/21 1/17 (5.9%) 1/9 (11.1%) \n Total 17/134 (12.7%) 24/134 (17.9%) 19/132 (14.4%)\n High \n Not high 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \nC-Reactive Protein Measurement \n WEEK 1 DAY 8 \n Low \n Not low 16/119 (13.4%) 22/113 (19.5%) 24/112 (21.4%)\n Low 2/15 (13.3%) 2/21 (9.5%) 7/20 (35%) \n Total 18/134 (13.4%) 24/134 (17.9%) 31/132 (23.5%)\n High \n Not high 21/114 (18.4%) 20/112 (17.9%) 17/115 (14.8%)\n High 2/20 (10%) 4/22 (18.2%) 3/17 (17.6%) \n Total 23/134 (17.2%) 24/134 (17.9%) 20/132 (15.2%)\n WEEK 2 DAY 15 \n Low \n Not low 26/119 (21.8%) 20/113 (17.7%) 12/112 (10.7%)\n Low 2/15 (13.3%) 3/21 (14.3%) 4/20 (20%) \n Total 28/134 (20.9%) 23/134 (17.2%) 16/132 (12.1%)\n High \n Not high 15/114 (13.2%) 17/112 (15.2%) 15/115 (13%) \n High 2/20 (10%) 4/22 (18.2%) 4/17 (23.5%) \n Total 17/134 (12.7%) 21/134 (15.7%) 19/132 (14.4%)\n WEEK 3 DAY 22 \n Low \n Not low 15/119 (12.6%) 21/113 (18.6%) 18/112 (16.1%)\n Low 0/15 3/21 (14.3%) 0/20 \n Total 15/134 (11.2%) 24/134 (17.9%) 18/132 (13.6%)\n High \n Not high 22/114 (19.3%) 18/112 (16.1%) 17/115 (14.8%)\n High 2/20 (10%) 5/22 (22.7%) 1/17 (5.9%) \n Total 24/134 (17.9%) 23/134 (17.2%) 18/132 (13.6%)\n WEEK 4 DAY 29 \n Low \n Not low 30/119 (25.2%) 13/113 (11.5%) 16/112 (14.3%)\n Low 3/15 (20%) 2/21 (9.5%) 5/20 (25%) \n Total 33/134 (24.6%) 15/134 (11.2%) 21/132 (15.9%)\n High \n Not high 17/114 (14.9%) 11/112 (9.8%) 16/115 (13.9%)\n High 2/20 (10%) 6/22 (27.3%) 3/17 (17.6%) \n Total 19/134 (14.2%) 17/134 (12.7%) 19/132 (14.4%)\n WEEK 5 DAY 36 \n Low \n Not low 17/119 (14.3%) 19/113 (16.8%) 16/112 (14.3%)\n Low 2/15 (13.3%) 3/21 (14.3%) 5/20 (25%) \n Total 19/134 (14.2%) 22/134 (16.4%) 21/132 (15.9%)\n High \n Not high 19/114 (16.7%) 17/112 (15.2%) 11/115 (9.6%) \n High 4/20 (20%) 6/22 (27.3%) 2/17 (11.8%) \n Total 23/134 (17.2%) 23/134 (17.2%) 13/132 (9.8%) \nImmunoglobulin A Measurement \n WEEK 1 DAY 8 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 18/119 (15.1%) 20/116 (17.2%) 14/113 (12.4%)\n High 1/15 (6.7%) 5/18 (27.8%) 4/19 (21.1%) \n Total 19/134 (14.2%) 25/134 (18.7%) 18/132 (13.6%)\n WEEK 2 DAY 15 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 16/119 (13.4%) 13/116 (11.2%) 12/113 (10.6%)\n High 1/15 (6.7%) 1/18 (5.6%) 2/19 (10.5%) \n Total 17/134 (12.7%) 14/134 (10.4%) 14/132 (10.6%)\n WEEK 3 DAY 22 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 17/119 (14.3%) 15/116 (12.9%) 21/113 (18.6%)\n High 0/15 1/18 (5.6%) 1/19 (5.3%) \n Total 17/134 (12.7%) 16/134 (11.9%) 22/132 (16.7%)\n WEEK 4 DAY 29 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 19/119 (16%) 16/116 (13.8%) 19/113 (16.8%)\n High 4/15 (26.7%) 5/18 (27.8%) 3/19 (15.8%) \n Total 23/134 (17.2%) 21/134 (15.7%) 22/132 (16.7%)\n WEEK 5 DAY 36 \n Low \n Not low 0/134 0/134 0/132 \n Total 0/134 0/134 0/132 \n High \n Not high 16/119 (13.4%) 21/116 (18.1%) 20/113 (17.7%)\n High 1/15 (6.7%) 3/18 (16.7%) 0/19 \n Total 17/134 (12.7%) 24/134 (17.9%) 20/132 (15.2%)\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n# Please note that df_explict_na has a na_level argument defaulting to \"<Missing>\",\n# Please don't change the na_level to anything other than NA, empty string or the default \"<Missing>\".\n\nadlb_f <- adlb %>%\n dplyr::filter(ABLFL != \"Y\") %>%\n dplyr::filter(!(AVISIT %in% c(\"SCREENING\", \"BASELINE\"))) %>%\n dplyr::mutate(AVISIT = droplevels(AVISIT)) %>%\n var_relabel(AVISIT = \"Visit\")\n\nadlb_f_crp <- adlb_f %>% dplyr::filter(PARAMCD == \"CRP\")", "crumbs": [ "Tables", "Lab Results", @@ -3000,7 +3000,7 @@ "href": "tables/lab-results/lbt06.html#reproducibility", "title": "LBT06", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:54:33 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:50:33 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -3024,7 +3024,7 @@ "href": "tables/lab-results/lbt05.html#reproducibility", "title": "LBT05", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:55:03 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:51:04 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -3036,7 +3036,7 @@ "href": "tables/lab-results/lbt07.html#output", "title": "LBT07", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n label_pos = \"topleft\",\n split_label = obj_label(adlb_f$PARAM)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n required = \"ATOXGR\",\n .stats = \"unique_count\"\n ) %>%\n split_rows_by(\n \"GRADE_DIR\",\n label_pos = \"topleft\",\n split_label = obj_label(adlb_f$GRADE_DIR),\n split_fun = trim_levels_to_map(map)\n ) %>%\n count_abnormal_by_worst_grade(\n var = \"GRADE_ANL\",\n variables = list(id = \"USUBJID\", param = \"PARAM\", grade_dir = \"GRADE_DIR\"),\n .indent_mods = 4L\n ) %>%\n append_topleft(\" Highest NCI CTCAE Grade\")\n\nresult <- build_table(lyt = lyt, df = adlb_f, alt_counts_df = adsl)\nresult <- result %>% prune_table()\n\nresult\n\n \n Direction of Abnormality A: Drug X B: Placebo C: Combination\n Highest NCI CTCAE Grade (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement (n) 134 134 132 \n LOW \n 1 15 (11.2%) 11 (8.2%) 15 (11.4%) \n 2 18 (13.4%) 24 (17.9%) 17 (12.9%) \n 3 16 (11.9%) 24 (17.9%) 16 (12.1%) \n 4 17 (12.7%) 10 (7.5%) 18 (13.6%) \n Any 66 (49.3%) 69 (51.5%) 66 (50%) \nC-Reactive Protein Measurement (n) 134 134 132 \n LOW \n 1 21 (15.7%) 22 (16.4%) 12 (9.1%) \n 2 24 (17.9%) 22 (16.4%) 18 (13.6%) \n 3 29 (21.6%) 21 (15.7%) 25 (18.9%) \n 4 10 (7.5%) 16 (11.9%) 22 (16.7%) \n Any 84 (62.7%) 81 (60.4%) 77 (58.3%) \n HIGH \n 1 20 (14.9%) 22 (16.4%) 22 (16.7%) \n 2 21 (15.7%) 15 (11.2%) 14 (10.6%) \n 3 25 (18.7%) 16 (11.9%) 20 (15.2%) \n 4 13 (9.7%) 20 (14.9%) 11 (8.3%) \n Any 79 (59%) 73 (54.5%) 67 (50.8%) \nImmunoglobulin A Measurement (n) 134 134 132 \n HIGH \n 1 19 (14.2%) 12 (9%) 18 (13.6%) \n 2 17 (12.7%) 24 (17.9%) 19 (14.4%) \n 3 21 (15.7%) 23 (17.2%) 23 (17.4%) \n 4 13 (9.7%) 13 (9.7%) 9 (6.8%) \n Any 70 (52.2%) 72 (53.7%) 69 (52.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\nlibrary(forcats)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadlb_labels <- var_labels(adlb)\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\n# Select worst post-baseline records.\nadlb_f <- adlb %>%\n filter(ATOXGR != \"<Missing>\") %>%\n filter(ONTRTFL == \"Y\") %>%\n filter(WGRLOFL == \"Y\" | WGRHIFL == \"Y\")\n\nvar_labels(adlb_f) <- adlb_labels\n\n# Derive GRADE_DIR and GRADE_ANL to use in layout from ATOXGR\nadlb_f <- adlb_f %>%\n mutate(\n GRADE_DIR = factor(\n case_when(\n ATOXGR %in% c(\"-1\", \"-2\", \"-3\", \"-4\") & .data$WGRLOFL == \"Y\" ~ \"LOW\",\n ATOXGR == \"0\" ~ \"ZERO\",\n ATOXGR %in% c(\"1\", \"2\", \"3\", \"4\") & .data$WGRHIFL == \"Y\" ~ \"HIGH\",\n TRUE ~ \"NONE\"\n ),\n levels = c(\"LOW\", \"ZERO\", \"HIGH\", \"NONE\")\n ),\n GRADE_ANL = forcats::fct_relevel(\n forcats::fct_recode(ATOXGR,\n `1` = \"-1\", `2` = \"-2\", `3` = \"-3\", `4` = \"-4\"\n ),\n c(\"0\", \"1\", \"2\", \"3\", \"4\")\n )\n ) %>%\n var_relabel(\n GRADE_DIR = \"Direction of Abnormality\",\n GRADE_ANL = \"Analysis Grade\"\n )\n\n# Construct analysis map\nmap <- expand.grid(\n PARAM = levels(adlb$PARAM),\n GRADE_DIR = c(\"LOW\", \"HIGH\"),\n GRADE_ANL = as.character(1:4),\n stringsAsFactors = FALSE\n) %>%\n arrange(PARAM, desc(GRADE_DIR), GRADE_ANL)", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n label_pos = \"topleft\",\n split_label = obj_label(adlb_f$PARAM)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n required = \"ATOXGR\",\n .stats = \"unique_count\"\n ) %>%\n split_rows_by(\n \"GRADE_DIR\",\n label_pos = \"topleft\",\n split_label = obj_label(adlb_f$GRADE_DIR),\n split_fun = trim_levels_to_map(map)\n ) %>%\n count_abnormal_by_worst_grade(\n var = \"GRADE_ANL\",\n variables = list(id = \"USUBJID\", param = \"PARAM\", grade_dir = \"GRADE_DIR\"),\n .indent_mods = 4L\n ) %>%\n append_topleft(\" Highest NCI CTCAE Grade\")\n\nresult <- build_table(lyt = lyt, df = adlb_f, alt_counts_df = adsl)\nresult <- result %>% prune_table()\n\nresult\n\nParameter \n Direction of Abnormality A: Drug X B: Placebo C: Combination\n Highest NCI CTCAE Grade (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement (n) 134 134 132 \n LOW \n 1 15 (11.2%) 11 (8.2%) 15 (11.4%) \n 2 18 (13.4%) 24 (17.9%) 17 (12.9%) \n 3 16 (11.9%) 24 (17.9%) 16 (12.1%) \n 4 17 (12.7%) 10 (7.5%) 18 (13.6%) \n Any 66 (49.3%) 69 (51.5%) 66 (50%) \nC-Reactive Protein Measurement (n) 134 134 132 \n LOW \n 1 21 (15.7%) 22 (16.4%) 12 (9.1%) \n 2 24 (17.9%) 22 (16.4%) 18 (13.6%) \n 3 29 (21.6%) 21 (15.7%) 25 (18.9%) \n 4 10 (7.5%) 16 (11.9%) 22 (16.7%) \n Any 84 (62.7%) 81 (60.4%) 77 (58.3%) \n HIGH \n 1 20 (14.9%) 22 (16.4%) 22 (16.7%) \n 2 21 (15.7%) 15 (11.2%) 14 (10.6%) \n 3 25 (18.7%) 16 (11.9%) 20 (15.2%) \n 4 13 (9.7%) 20 (14.9%) 11 (8.3%) \n Any 79 (59%) 73 (54.5%) 67 (50.8%) \nImmunoglobulin A Measurement (n) 134 134 132 \n HIGH \n 1 19 (14.2%) 12 (9%) 18 (13.6%) \n 2 17 (12.7%) 24 (17.9%) 19 (14.4%) \n 3 21 (15.7%) 23 (17.2%) 23 (17.4%) \n 4 13 (9.7%) 13 (9.7%) 9 (6.8%) \n Any 70 (52.2%) 72 (53.7%) 69 (52.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\nlibrary(forcats)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadlb_labels <- var_labels(adlb)\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\n# Select worst post-baseline records.\nadlb_f <- adlb %>%\n filter(ATOXGR != \"<Missing>\") %>%\n filter(ONTRTFL == \"Y\") %>%\n filter(WGRLOFL == \"Y\" | WGRHIFL == \"Y\")\n\nvar_labels(adlb_f) <- adlb_labels\n\n# Derive GRADE_DIR and GRADE_ANL to use in layout from ATOXGR\nadlb_f <- adlb_f %>%\n mutate(\n GRADE_DIR = factor(\n case_when(\n ATOXGR %in% c(\"-1\", \"-2\", \"-3\", \"-4\") & .data$WGRLOFL == \"Y\" ~ \"LOW\",\n ATOXGR == \"0\" ~ \"ZERO\",\n ATOXGR %in% c(\"1\", \"2\", \"3\", \"4\") & .data$WGRHIFL == \"Y\" ~ \"HIGH\",\n TRUE ~ \"NONE\"\n ),\n levels = c(\"LOW\", \"ZERO\", \"HIGH\", \"NONE\")\n ),\n GRADE_ANL = forcats::fct_relevel(\n forcats::fct_recode(ATOXGR,\n `1` = \"-1\", `2` = \"-2\", `3` = \"-3\", `4` = \"-4\"\n ),\n c(\"0\", \"1\", \"2\", \"3\", \"4\")\n )\n ) %>%\n var_relabel(\n GRADE_DIR = \"Direction of Abnormality\",\n GRADE_ANL = \"Analysis Grade\"\n )\n\n# Construct analysis map\nmap <- expand.grid(\n PARAM = levels(adlb$PARAM),\n GRADE_DIR = c(\"LOW\", \"HIGH\"),\n GRADE_ANL = as.character(1:4),\n stringsAsFactors = FALSE\n) %>%\n arrange(PARAM, desc(GRADE_DIR), GRADE_ANL)", "crumbs": [ "Tables", "Lab Results", @@ -3060,7 +3060,7 @@ "href": "tables/lab-results/lbt07.html#reproducibility", "title": "LBT07", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:55:43 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, 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RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:51:43 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n 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2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:54:07 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Lab Results", @@ -3192,7 +3192,7 @@ "href": "tables/lab-results/lbt14.html#output", "title": "LBT14", "section": "Output", - "text": "Output\n\n\nStandard Table (High)\nStandard Table (Low)\nTable Without Patients with Missing Baseline (High)\nTable with Missing Baseline Considered as Grade 0 (Low)\nTable with Fill-In of Grades\nData Setup\n\n\n\nNote that the worst laboratory flag (below WGRHIFL) must be selected appropriately in the pre-processing step. New grouping variables ATOXGR_GP (post-baseline) and BTOXGR_GP (baseline) are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRHIFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\n \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not High 134 134 132 \n Not High 134 (100%) 134 (100%) 132 (100%) \nC-Reactive Protein Measurement \n Not High 114 112 115 \n Not High 45 (39.5%) 55 (49.1%) 57 (49.6%) \n 1 18 (15.8%) 18 (16.1%) 19 (16.5%) \n 2 19 (16.7%) 10 (8.9%) 11 (9.6%) \n 3 22 (19.3%) 13 (11.6%) 20 (17.4%) \n 4 10 (8.8%) 16 (14.3%) 8 (7.0%) \n 1 8 10 7 \n Not High 5 (62.5%) 2 (20.0%) 2 (28.6%) \n 1 0 1 (10.0%) 0 \n 2 1 (12.5%) 3 (30.0%) 3 (42.9%) \n 3 1 (12.5%) 1 (10.0%) 0 \n 4 1 (12.5%) 3 (30.0%) 2 (28.6%) \n 2 2 6 7 \n Not High 1 (50.0%) 4 (66.7%) 4 (57.1%) \n 1 0 1 (16.7%) 2 (28.6%) \n 2 1 (50.0%) 1 (16.7%) 0 \n 4 0 0 1 (14.3%) \n 3 7 4 3 \n Not High 3 (42.9%) 0 2 (66.7%) \n 1 2 (28.6%) 1 (25.0%) 1 (33.3%) \n 2 0 1 (25.0%) 0 \n 3 1 (14.3%) 1 (25.0%) 0 \n 4 1 (14.3%) 1 (25.0%) 0 \n 4 3 2 0 \n Not High 1 (33.3%) 0 0 \n 1 0 1 (50.0%) 0 \n 3 1 (33.3%) 1 (50.0%) 0 \n 4 1 (33.3%) 0 0 \nImmunoglobulin A Measurement \n Not High 119 116 113 \n Not High 55 (46.2%) 54 (46.6%) 51 (45.1%) \n 1 18 (15.1%) 11 (9.5%) 15 (13.3%) \n 2 14 (11.8%) 22 (19.0%) 19 (16.8%) \n 3 20 (16.8%) 19 (16.4%) 20 (17.7%) \n 4 12 (10.1%) 10 (8.6%) 8 (7.1%) \n 1 5 4 2 \n Not High 4 (80.0%) 1 (25.0%) 2 (100%) \n 2 1 (20.0%) 1 (25.0%) 0 \n 3 0 2 (50.0%) 0 \n 2 4 4 5 \n Not High 2 (50.0%) 3 (75.0%) 3 (60.0%) \n 1 1 (25.0%) 0 2 (40.0%) \n 3 1 (25.0%) 0 0 \n 4 0 1 (25.0%) 0 \n 3 4 5 11 \n Not High 3 (75.0%) 1 (20.0%) 6 (54.5%) \n 1 0 1 (20.0%) 1 (9.1%) \n 2 1 (25.0%) 0 0 \n 3 0 2 (40.0%) 3 (27.3%) \n 4 0 1 (20.0%) 1 (9.1%) \n 4 2 5 1 \n Not High 0 3 (60.0%) 1 (100%) \n 2 1 (50.0%) 1 (20.0%) 0 \n 4 1 (50.0%) 1 (20.0%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that the worst laboratory flag (below WGRLOFL) must be selected appropriately in the pre-processing step. New grouping variables ATOXGR_GP (post-baseline) and BTOXGR_GP (baseline) are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRLOFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\n \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not Low 113 117 123 \n Not Low 56 (49.6%) 55 (47.0%) 62 (50.4%) \n 1 11 (9.7%) 9 (7.7%) 15 (12.2%) \n 2 15 (13.3%) 23 (19.7%) 16 (13.0%) \n 3 15 (13.3%) 21 (17.9%) 13 (10.6%) \n 4 16 (14.2%) 9 (7.7%) 17 (13.8%) \n 1 6 6 4 \n Not Low 3 (50.0%) 5 (83.3%) 3 (75.0%) \n 1 3 (50.0%) 0 0 \n 4 0 1 (16.7%) 1 (25.0%) \n 2 8 5 1 \n Not Low 5 (62.5%) 3 (60.0%) 0 \n 1 0 1 (20.0%) 0 \n 2 2 (25.0%) 0 0 \n 3 0 1 (20.0%) 1 (100%) \n 4 1 (12.5%) 0 0 \n 3 3 3 2 \n Not Low 0 1 (33.3%) 0 \n 1 1 (33.3%) 0 0 \n 2 1 (33.3%) 0 1 (50.0%) \n 3 1 (33.3%) 2 (66.7%) 1 (50.0%) \n 4 4 3 2 \n Not Low 4 (100%) 1 (33.3%) 1 (50.0%) \n 1 0 1 (33.3%) 0 \n 2 0 1 (33.3%) 0 \n 3 0 0 1 (50.0%) \nC-Reactive Protein Measurement \n Not Low 119 113 112 \n Not Low 41 (34.5%) 42 (37.2%) 50 (44.6%) \n 1 20 (16.8%) 18 (15.9%) 11 (9.8%) \n 2 24 (20.2%) 20 (17.7%) 14 (12.5%) \n 3 25 (21.0%) 18 (15.9%) 21 (18.8%) \n 4 9 (7.6%) 15 (13.3%) 16 (14.3%) \n 1 3 5 9 \n Not Low 2 (66.7%) 2 (40.0%) 2 (22.2%) \n 2 0 1 (20.0%) 3 (33.3%) \n 3 1 (33.3%) 1 (20.0%) 0 \n 4 0 1 (20.0%) 4 (44.4%) \n 2 5 9 2 \n Not Low 3 (60.0%) 4 (44.4%) 1 (50.0%) \n 1 1 (20.0%) 4 (44.4%) 0 \n 3 0 1 (11.1%) 1 (50.0%) \n 4 1 (20.0%) 0 0 \n 3 4 5 7 \n Not Low 1 (25.0%) 4 (80.0%) 2 (28.6%) \n 1 0 0 1 (14.3%) \n 2 0 0 1 (14.3%) \n 3 3 (75.0%) 1 (20.0%) 2 (28.6%) \n 4 0 0 1 (14.3%) \n 4 3 2 2 \n Not Low 3 (100%) 1 (50.0%) 0 \n 2 0 1 (50.0%) 0 \n 3 0 0 1 (50.0%) \n 4 0 0 1 (50.0%) \nImmunoglobulin A Measurement \n Not Low 134 134 132 \n Not Low 134 (100%) 134 (100%) 132 (100%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that missing baseline values are filtered out in the pre-processing step.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRHIFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n filter(BTOXGR != \"<Missing>\") %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\n \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not High 134 134 132 \n Not High 134 (100%) 134 (100%) 132 (100%) \nC-Reactive Protein Measurement \n Not High 114 112 115 \n Not High 45 (39.5%) 55 (49.1%) 57 (49.6%) \n 1 18 (15.8%) 18 (16.1%) 19 (16.5%) \n 2 19 (16.7%) 10 (8.9%) 11 (9.6%) \n 3 22 (19.3%) 13 (11.6%) 20 (17.4%) \n 4 10 (8.8%) 16 (14.3%) 8 (7.0%) \n 1 8 10 7 \n Not High 5 (62.5%) 2 (20.0%) 2 (28.6%) \n 1 0 1 (10.0%) 0 \n 2 1 (12.5%) 3 (30.0%) 3 (42.9%) \n 3 1 (12.5%) 1 (10.0%) 0 \n 4 1 (12.5%) 3 (30.0%) 2 (28.6%) \n 2 2 6 7 \n Not High 1 (50.0%) 4 (66.7%) 4 (57.1%) \n 1 0 1 (16.7%) 2 (28.6%) \n 2 1 (50.0%) 1 (16.7%) 0 \n 4 0 0 1 (14.3%) \n 3 7 4 3 \n Not High 3 (42.9%) 0 2 (66.7%) \n 1 2 (28.6%) 1 (25.0%) 1 (33.3%) \n 2 0 1 (25.0%) 0 \n 3 1 (14.3%) 1 (25.0%) 0 \n 4 1 (14.3%) 1 (25.0%) 0 \n 4 3 2 0 \n Not High 1 (33.3%) 0 0 \n 1 0 1 (50.0%) 0 \n 3 1 (33.3%) 1 (50.0%) 0 \n 4 1 (33.3%) 0 0 \nImmunoglobulin A Measurement \n Not High 119 116 113 \n Not High 55 (46.2%) 54 (46.6%) 51 (45.1%) \n 1 18 (15.1%) 11 (9.5%) 15 (13.3%) \n 2 14 (11.8%) 22 (19.0%) 19 (16.8%) \n 3 20 (16.8%) 19 (16.4%) 20 (17.7%) \n 4 12 (10.1%) 10 (8.6%) 8 (7.1%) \n 1 5 4 2 \n Not High 4 (80.0%) 1 (25.0%) 2 (100%) \n 2 1 (20.0%) 1 (25.0%) 0 \n 3 0 2 (50.0%) 0 \n 2 4 4 5 \n Not High 2 (50.0%) 3 (75.0%) 3 (60.0%) \n 1 1 (25.0%) 0 2 (40.0%) \n 3 1 (25.0%) 0 0 \n 4 0 1 (25.0%) 0 \n 3 4 5 11 \n Not High 3 (75.0%) 1 (20.0%) 6 (54.5%) \n 1 0 1 (20.0%) 1 (9.1%) \n 2 1 (25.0%) 0 0 \n 3 0 2 (40.0%) 3 (27.3%) \n 4 0 1 (20.0%) 1 (9.1%) \n 4 2 5 1 \n Not High 0 3 (60.0%) 1 (100%) \n 2 1 (50.0%) 1 (20.0%) 0 \n 4 1 (50.0%) 1 (20.0%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that when BTOXGR is missing, the grouping variable BTOXGR_GP now is \"Not Low\" instead of \"Missing\" compared to Standard Table (Low).\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRLOFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4, \"<Missing>\") ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\n \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not Low 113 117 123 \n Not Low 56 (49.6%) 55 (47.0%) 62 (50.4%) \n 1 11 (9.7%) 9 (7.7%) 15 (12.2%) \n 2 15 (13.3%) 23 (19.7%) 16 (13.0%) \n 3 15 (13.3%) 21 (17.9%) 13 (10.6%) \n 4 16 (14.2%) 9 (7.7%) 17 (13.8%) \n 1 6 6 4 \n Not Low 3 (50.0%) 5 (83.3%) 3 (75.0%) \n 1 3 (50.0%) 0 0 \n 4 0 1 (16.7%) 1 (25.0%) \n 2 8 5 1 \n Not Low 5 (62.5%) 3 (60.0%) 0 \n 1 0 1 (20.0%) 0 \n 2 2 (25.0%) 0 0 \n 3 0 1 (20.0%) 1 (100%) \n 4 1 (12.5%) 0 0 \n 3 3 3 2 \n Not Low 0 1 (33.3%) 0 \n 1 1 (33.3%) 0 0 \n 2 1 (33.3%) 0 1 (50.0%) \n 3 1 (33.3%) 2 (66.7%) 1 (50.0%) \n 4 4 3 2 \n Not Low 4 (100%) 1 (33.3%) 1 (50.0%) \n 1 0 1 (33.3%) 0 \n 2 0 1 (33.3%) 0 \n 3 0 0 1 (50.0%) \nC-Reactive Protein Measurement \n Not Low 119 113 112 \n Not Low 41 (34.5%) 42 (37.2%) 50 (44.6%) \n 1 20 (16.8%) 18 (15.9%) 11 (9.8%) \n 2 24 (20.2%) 20 (17.7%) 14 (12.5%) \n 3 25 (21.0%) 18 (15.9%) 21 (18.8%) \n 4 9 (7.6%) 15 (13.3%) 16 (14.3%) \n 1 3 5 9 \n Not Low 2 (66.7%) 2 (40.0%) 2 (22.2%) \n 2 0 1 (20.0%) 3 (33.3%) \n 3 1 (33.3%) 1 (20.0%) 0 \n 4 0 1 (20.0%) 4 (44.4%) \n 2 5 9 2 \n Not Low 3 (60.0%) 4 (44.4%) 1 (50.0%) \n 1 1 (20.0%) 4 (44.4%) 0 \n 3 0 1 (11.1%) 1 (50.0%) \n 4 1 (20.0%) 0 0 \n 3 4 5 7 \n Not Low 1 (25.0%) 4 (80.0%) 2 (28.6%) \n 1 0 0 1 (14.3%) \n 2 0 0 1 (14.3%) \n 3 3 (75.0%) 1 (20.0%) 2 (28.6%) \n 4 0 0 1 (14.3%) \n 4 3 2 2 \n Not Low 3 (100%) 1 (50.0%) 0 \n 2 0 1 (50.0%) 0 \n 3 0 0 1 (50.0%) \n 4 0 0 1 (50.0%) \nImmunoglobulin A Measurement \n Not Low 134 134 132 \n Not Low 134 (100%) 134 (100%) 132 (100%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPre-processing is the same as Standard Table (High), but in order to keep all levels, prune_table() is not applied.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRHIFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\n \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not High 134 134 132 \n Not High 134 (100%) 134 (100%) 132 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 1 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 4 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \nC-Reactive Protein Measurement \n Not High 114 112 115 \n Not High 45 (39.5%) 55 (49.1%) 57 (49.6%) \n 1 18 (15.8%) 18 (16.1%) 19 (16.5%) \n 2 19 (16.7%) 10 (8.9%) 11 (9.6%) \n 3 22 (19.3%) 13 (11.6%) 20 (17.4%) \n 4 10 (8.8%) 16 (14.3%) 8 (7.0%) \n Missing 0 0 0 \n 1 8 10 7 \n Not High 5 (62.5%) 2 (20.0%) 2 (28.6%) \n 1 0 1 (10.0%) 0 \n 2 1 (12.5%) 3 (30.0%) 3 (42.9%) \n 3 1 (12.5%) 1 (10.0%) 0 \n 4 1 (12.5%) 3 (30.0%) 2 (28.6%) \n Missing 0 0 0 \n 2 2 6 7 \n Not High 1 (50.0%) 4 (66.7%) 4 (57.1%) \n 1 0 1 (16.7%) 2 (28.6%) \n 2 1 (50.0%) 1 (16.7%) 0 \n 3 0 0 0 \n 4 0 0 1 (14.3%) \n Missing 0 0 0 \n 3 7 4 3 \n Not High 3 (42.9%) 0 2 (66.7%) \n 1 2 (28.6%) 1 (25.0%) 1 (33.3%) \n 2 0 1 (25.0%) 0 \n 3 1 (14.3%) 1 (25.0%) 0 \n 4 1 (14.3%) 1 (25.0%) 0 \n Missing 0 0 0 \n 4 3 2 0 \n Not High 1 (33.3%) 0 0 \n 1 0 1 (50.0%) 0 \n 2 0 0 0 \n 3 1 (33.3%) 1 (50.0%) 0 \n 4 1 (33.3%) 0 0 \n Missing 0 0 0 \n Missing 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \nImmunoglobulin A Measurement \n Not High 119 116 113 \n Not High 55 (46.2%) 54 (46.6%) 51 (45.1%) \n 1 18 (15.1%) 11 (9.5%) 15 (13.3%) \n 2 14 (11.8%) 22 (19.0%) 19 (16.8%) \n 3 20 (16.8%) 19 (16.4%) 20 (17.7%) \n 4 12 (10.1%) 10 (8.6%) 8 (7.1%) \n Missing 0 0 0 \n 1 5 4 2 \n Not High 4 (80.0%) 1 (25.0%) 2 (100%) \n 1 0 0 0 \n 2 1 (20.0%) 1 (25.0%) 0 \n 3 0 2 (50.0%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 4 4 5 \n Not High 2 (50.0%) 3 (75.0%) 3 (60.0%) \n 1 1 (25.0%) 0 2 (40.0%) \n 2 0 0 0 \n 3 1 (25.0%) 0 0 \n 4 0 1 (25.0%) 0 \n Missing 0 0 0 \n 3 4 5 11 \n Not High 3 (75.0%) 1 (20.0%) 6 (54.5%) \n 1 0 1 (20.0%) 1 (9.1%) \n 2 1 (25.0%) 0 0 \n 3 0 2 (40.0%) 3 (27.3%) \n 4 0 1 (20.0%) 1 (9.1%) \n Missing 0 0 0 \n 4 2 5 1 \n Not High 0 3 (60.0%) 1 (100%) \n 1 0 0 0 \n 2 1 (50.0%) 1 (20.0%) 0 \n 3 0 0 0 \n 4 1 (50.0%) 1 (20.0%) 0 \n Missing 0 0 0 \n Missing 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPlease note that for each variant, the adlb dataset needs to be filtered on correct flags like WGRLOFL, WGRHIFL, et al., otherwise the layout function will not return the correct counts. There is an option to create a record for a lab test where no record is found at that visit. If you specified add_derived_type = \"PHANTOM\" & dtype_phantom_cond, you don’t have to use the h_adsl_adlb_merge_using_worst_flag function to preprocess your adlb dataset. Otherwise please follow the pre-processing steps below before applying the layout functions.\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\n# Please note that in real clinical data, population flag like SAFFL, and parameter category like PARCAT2 needs to be\n# selected properly.\nadsl_f <- adsl %>% filter(SAFFL == \"Y\")\nadlb <- adlb %>% filter(SAFFL == \"Y\")", + "text": "Output\n\n\nStandard Table (High)\nStandard Table (Low)\nTable Without Patients with Missing Baseline (High)\nTable with Missing Baseline Considered as Grade 0 (Low)\nTable with Fill-In of Grades\nData Setup\n\n\n\nNote that the worst laboratory flag (below WGRHIFL) must be selected appropriately in the pre-processing step. New grouping variables ATOXGR_GP (post-baseline) and BTOXGR_GP (baseline) are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRHIFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\nParameter \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not High 134 134 132 \n Not High 134 (100%) 134 (100%) 132 (100%) \nC-Reactive Protein Measurement \n Not High 114 112 115 \n Not High 45 (39.5%) 55 (49.1%) 57 (49.6%) \n 1 18 (15.8%) 18 (16.1%) 19 (16.5%) \n 2 19 (16.7%) 10 (8.9%) 11 (9.6%) \n 3 22 (19.3%) 13 (11.6%) 20 (17.4%) \n 4 10 (8.8%) 16 (14.3%) 8 (7.0%) \n 1 8 10 7 \n Not High 5 (62.5%) 2 (20.0%) 2 (28.6%) \n 1 0 1 (10.0%) 0 \n 2 1 (12.5%) 3 (30.0%) 3 (42.9%) \n 3 1 (12.5%) 1 (10.0%) 0 \n 4 1 (12.5%) 3 (30.0%) 2 (28.6%) \n 2 2 6 7 \n Not High 1 (50.0%) 4 (66.7%) 4 (57.1%) \n 1 0 1 (16.7%) 2 (28.6%) \n 2 1 (50.0%) 1 (16.7%) 0 \n 4 0 0 1 (14.3%) \n 3 7 4 3 \n Not High 3 (42.9%) 0 2 (66.7%) \n 1 2 (28.6%) 1 (25.0%) 1 (33.3%) \n 2 0 1 (25.0%) 0 \n 3 1 (14.3%) 1 (25.0%) 0 \n 4 1 (14.3%) 1 (25.0%) 0 \n 4 3 2 0 \n Not High 1 (33.3%) 0 0 \n 1 0 1 (50.0%) 0 \n 3 1 (33.3%) 1 (50.0%) 0 \n 4 1 (33.3%) 0 0 \nImmunoglobulin A Measurement \n Not High 119 116 113 \n Not High 55 (46.2%) 54 (46.6%) 51 (45.1%) \n 1 18 (15.1%) 11 (9.5%) 15 (13.3%) \n 2 14 (11.8%) 22 (19.0%) 19 (16.8%) \n 3 20 (16.8%) 19 (16.4%) 20 (17.7%) \n 4 12 (10.1%) 10 (8.6%) 8 (7.1%) \n 1 5 4 2 \n Not High 4 (80.0%) 1 (25.0%) 2 (100%) \n 2 1 (20.0%) 1 (25.0%) 0 \n 3 0 2 (50.0%) 0 \n 2 4 4 5 \n Not High 2 (50.0%) 3 (75.0%) 3 (60.0%) \n 1 1 (25.0%) 0 2 (40.0%) \n 3 1 (25.0%) 0 0 \n 4 0 1 (25.0%) 0 \n 3 4 5 11 \n Not High 3 (75.0%) 1 (20.0%) 6 (54.5%) \n 1 0 1 (20.0%) 1 (9.1%) \n 2 1 (25.0%) 0 0 \n 3 0 2 (40.0%) 3 (27.3%) \n 4 0 1 (20.0%) 1 (9.1%) \n 4 2 5 1 \n Not High 0 3 (60.0%) 1 (100%) \n 2 1 (50.0%) 1 (20.0%) 0 \n 4 1 (50.0%) 1 (20.0%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that the worst laboratory flag (below WGRLOFL) must be selected appropriately in the pre-processing step. New grouping variables ATOXGR_GP (post-baseline) and BTOXGR_GP (baseline) are created to display the correct output.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRLOFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\nParameter \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not Low 113 117 123 \n Not Low 56 (49.6%) 55 (47.0%) 62 (50.4%) \n 1 11 (9.7%) 9 (7.7%) 15 (12.2%) \n 2 15 (13.3%) 23 (19.7%) 16 (13.0%) \n 3 15 (13.3%) 21 (17.9%) 13 (10.6%) \n 4 16 (14.2%) 9 (7.7%) 17 (13.8%) \n 1 6 6 4 \n Not Low 3 (50.0%) 5 (83.3%) 3 (75.0%) \n 1 3 (50.0%) 0 0 \n 4 0 1 (16.7%) 1 (25.0%) \n 2 8 5 1 \n Not Low 5 (62.5%) 3 (60.0%) 0 \n 1 0 1 (20.0%) 0 \n 2 2 (25.0%) 0 0 \n 3 0 1 (20.0%) 1 (100%) \n 4 1 (12.5%) 0 0 \n 3 3 3 2 \n Not Low 0 1 (33.3%) 0 \n 1 1 (33.3%) 0 0 \n 2 1 (33.3%) 0 1 (50.0%) \n 3 1 (33.3%) 2 (66.7%) 1 (50.0%) \n 4 4 3 2 \n Not Low 4 (100%) 1 (33.3%) 1 (50.0%) \n 1 0 1 (33.3%) 0 \n 2 0 1 (33.3%) 0 \n 3 0 0 1 (50.0%) \nC-Reactive Protein Measurement \n Not Low 119 113 112 \n Not Low 41 (34.5%) 42 (37.2%) 50 (44.6%) \n 1 20 (16.8%) 18 (15.9%) 11 (9.8%) \n 2 24 (20.2%) 20 (17.7%) 14 (12.5%) \n 3 25 (21.0%) 18 (15.9%) 21 (18.8%) \n 4 9 (7.6%) 15 (13.3%) 16 (14.3%) \n 1 3 5 9 \n Not Low 2 (66.7%) 2 (40.0%) 2 (22.2%) \n 2 0 1 (20.0%) 3 (33.3%) \n 3 1 (33.3%) 1 (20.0%) 0 \n 4 0 1 (20.0%) 4 (44.4%) \n 2 5 9 2 \n Not Low 3 (60.0%) 4 (44.4%) 1 (50.0%) \n 1 1 (20.0%) 4 (44.4%) 0 \n 3 0 1 (11.1%) 1 (50.0%) \n 4 1 (20.0%) 0 0 \n 3 4 5 7 \n Not Low 1 (25.0%) 4 (80.0%) 2 (28.6%) \n 1 0 0 1 (14.3%) \n 2 0 0 1 (14.3%) \n 3 3 (75.0%) 1 (20.0%) 2 (28.6%) \n 4 0 0 1 (14.3%) \n 4 3 2 2 \n Not Low 3 (100%) 1 (50.0%) 0 \n 2 0 1 (50.0%) 0 \n 3 0 0 1 (50.0%) \n 4 0 0 1 (50.0%) \nImmunoglobulin A Measurement \n Not Low 134 134 132 \n Not Low 134 (100%) 134 (100%) 132 (100%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that missing baseline values are filtered out in the pre-processing step.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRHIFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n filter(BTOXGR != \"<Missing>\") %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\nParameter \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not High 134 134 132 \n Not High 134 (100%) 134 (100%) 132 (100%) \nC-Reactive Protein Measurement \n Not High 114 112 115 \n Not High 45 (39.5%) 55 (49.1%) 57 (49.6%) \n 1 18 (15.8%) 18 (16.1%) 19 (16.5%) \n 2 19 (16.7%) 10 (8.9%) 11 (9.6%) \n 3 22 (19.3%) 13 (11.6%) 20 (17.4%) \n 4 10 (8.8%) 16 (14.3%) 8 (7.0%) \n 1 8 10 7 \n Not High 5 (62.5%) 2 (20.0%) 2 (28.6%) \n 1 0 1 (10.0%) 0 \n 2 1 (12.5%) 3 (30.0%) 3 (42.9%) \n 3 1 (12.5%) 1 (10.0%) 0 \n 4 1 (12.5%) 3 (30.0%) 2 (28.6%) \n 2 2 6 7 \n Not High 1 (50.0%) 4 (66.7%) 4 (57.1%) \n 1 0 1 (16.7%) 2 (28.6%) \n 2 1 (50.0%) 1 (16.7%) 0 \n 4 0 0 1 (14.3%) \n 3 7 4 3 \n Not High 3 (42.9%) 0 2 (66.7%) \n 1 2 (28.6%) 1 (25.0%) 1 (33.3%) \n 2 0 1 (25.0%) 0 \n 3 1 (14.3%) 1 (25.0%) 0 \n 4 1 (14.3%) 1 (25.0%) 0 \n 4 3 2 0 \n Not High 1 (33.3%) 0 0 \n 1 0 1 (50.0%) 0 \n 3 1 (33.3%) 1 (50.0%) 0 \n 4 1 (33.3%) 0 0 \nImmunoglobulin A Measurement \n Not High 119 116 113 \n Not High 55 (46.2%) 54 (46.6%) 51 (45.1%) \n 1 18 (15.1%) 11 (9.5%) 15 (13.3%) \n 2 14 (11.8%) 22 (19.0%) 19 (16.8%) \n 3 20 (16.8%) 19 (16.4%) 20 (17.7%) \n 4 12 (10.1%) 10 (8.6%) 8 (7.1%) \n 1 5 4 2 \n Not High 4 (80.0%) 1 (25.0%) 2 (100%) \n 2 1 (20.0%) 1 (25.0%) 0 \n 3 0 2 (50.0%) 0 \n 2 4 4 5 \n Not High 2 (50.0%) 3 (75.0%) 3 (60.0%) \n 1 1 (25.0%) 0 2 (40.0%) \n 3 1 (25.0%) 0 0 \n 4 0 1 (25.0%) 0 \n 3 4 5 11 \n Not High 3 (75.0%) 1 (20.0%) 6 (54.5%) \n 1 0 1 (20.0%) 1 (9.1%) \n 2 1 (25.0%) 0 0 \n 3 0 2 (40.0%) 3 (27.3%) \n 4 0 1 (20.0%) 1 (9.1%) \n 4 2 5 1 \n Not High 0 3 (60.0%) 1 (100%) \n 2 1 (50.0%) 1 (20.0%) 0 \n 4 1 (50.0%) 1 (20.0%) 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nNote that when BTOXGR is missing, the grouping variable BTOXGR_GP now is \"Not Low\" instead of \"Missing\" compared to Standard Table (Low).\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRLOFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRLOFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, 1, 2, 3, 4) ~ \"Not Low\",\n ATOXGR == -1 ~ \"1\",\n ATOXGR == -2 ~ \"2\",\n ATOXGR == -3 ~ \"3\",\n ATOXGR == -4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, 1, 2, 3, 4, \"<Missing>\") ~ \"Not Low\",\n BTOXGR == -1 ~ \"1\",\n BTOXGR == -2 ~ \"2\",\n BTOXGR == -3 ~ \"3\",\n BTOXGR == -4 ~ \"4\"\n ), levels = c(\"Not Low\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f) %>%\n prune_table()\n\nresult\n\nParameter \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not Low 113 117 123 \n Not Low 56 (49.6%) 55 (47.0%) 62 (50.4%) \n 1 11 (9.7%) 9 (7.7%) 15 (12.2%) \n 2 15 (13.3%) 23 (19.7%) 16 (13.0%) \n 3 15 (13.3%) 21 (17.9%) 13 (10.6%) \n 4 16 (14.2%) 9 (7.7%) 17 (13.8%) \n 1 6 6 4 \n Not Low 3 (50.0%) 5 (83.3%) 3 (75.0%) \n 1 3 (50.0%) 0 0 \n 4 0 1 (16.7%) 1 (25.0%) \n 2 8 5 1 \n Not Low 5 (62.5%) 3 (60.0%) 0 \n 1 0 1 (20.0%) 0 \n 2 2 (25.0%) 0 0 \n 3 0 1 (20.0%) 1 (100%) \n 4 1 (12.5%) 0 0 \n 3 3 3 2 \n Not Low 0 1 (33.3%) 0 \n 1 1 (33.3%) 0 0 \n 2 1 (33.3%) 0 1 (50.0%) \n 3 1 (33.3%) 2 (66.7%) 1 (50.0%) \n 4 4 3 2 \n Not Low 4 (100%) 1 (33.3%) 1 (50.0%) \n 1 0 1 (33.3%) 0 \n 2 0 1 (33.3%) 0 \n 3 0 0 1 (50.0%) \nC-Reactive Protein Measurement \n Not Low 119 113 112 \n Not Low 41 (34.5%) 42 (37.2%) 50 (44.6%) \n 1 20 (16.8%) 18 (15.9%) 11 (9.8%) \n 2 24 (20.2%) 20 (17.7%) 14 (12.5%) \n 3 25 (21.0%) 18 (15.9%) 21 (18.8%) \n 4 9 (7.6%) 15 (13.3%) 16 (14.3%) \n 1 3 5 9 \n Not Low 2 (66.7%) 2 (40.0%) 2 (22.2%) \n 2 0 1 (20.0%) 3 (33.3%) \n 3 1 (33.3%) 1 (20.0%) 0 \n 4 0 1 (20.0%) 4 (44.4%) \n 2 5 9 2 \n Not Low 3 (60.0%) 4 (44.4%) 1 (50.0%) \n 1 1 (20.0%) 4 (44.4%) 0 \n 3 0 1 (11.1%) 1 (50.0%) \n 4 1 (20.0%) 0 0 \n 3 4 5 7 \n Not Low 1 (25.0%) 4 (80.0%) 2 (28.6%) \n 1 0 0 1 (14.3%) \n 2 0 0 1 (14.3%) \n 3 3 (75.0%) 1 (20.0%) 2 (28.6%) \n 4 0 0 1 (14.3%) \n 4 3 2 2 \n Not Low 3 (100%) 1 (50.0%) 0 \n 2 0 1 (50.0%) 0 \n 3 0 0 1 (50.0%) \n 4 0 0 1 (50.0%) \nImmunoglobulin A Measurement \n Not Low 134 134 132 \n Not Low 134 (100%) 134 (100%) 132 (100%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPre-processing is the same as Standard Table (High), but in order to keep all levels, prune_table() is not applied.\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadlb_f <- adlb %>% filter(WGRHIFL == \"Y\")\n\n# Please note the step below can be skipped if you are using DTYPE PHANTOM\nadlb_out <- h_adsl_adlb_merge_using_worst_flag(adsl_f, adlb_f, worst_flag = c(\"WGRHIFL\" = \"Y\"))\n\n# Create new grouping variables ATOXGR_GP, BTOXGR_GP\nadlb_out <- adlb_out %>%\n mutate(\n ATOXGR_GP = factor(case_when(\n ATOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n ATOXGR == 1 ~ \"1\",\n ATOXGR == 2 ~ \"2\",\n ATOXGR == 3 ~ \"3\",\n ATOXGR == 4 ~ \"4\",\n ATOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n ) %>%\n mutate(\n BTOXGR_GP = factor(case_when(\n BTOXGR %in% c(0, -1, -2, -3, -4) ~ \"Not High\",\n BTOXGR == 1 ~ \"1\",\n BTOXGR == 2 ~ \"2\",\n BTOXGR == 3 ~ \"3\",\n BTOXGR == 4 ~ \"4\",\n BTOXGR == \"<Missing>\" ~ \"Missing\"\n ), levels = c(\"Not High\", \"1\", \"2\", \"3\", \"4\", \"Missing\"))\n )\n\nresult <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_fun = drop_split_levels,\n label_pos = \"topleft\",\n split_label = \"Parameter\"\n ) %>%\n split_rows_by(\n \"BTOXGR_GP\",\n label_pos = \"topleft\",\n split_label = \" Baseline NCI-CTCAE Grade\",\n indent_mod = 2L\n ) %>%\n summarize_num_patients(var = \"USUBJID\", .stats = c(\"unique_count\"), unique_count_suffix = FALSE) %>%\n count_occurrences_by_grade(\"ATOXGR_GP\", denom = \"n\", drop = FALSE, .indent_mods = 3L) %>%\n append_topleft(\" Post-baseline NCI-CTCAE Grade\") %>%\n build_table(df = adlb_out, alt_counts_df = adsl_f)\n\nresult\n\nParameter \n Baseline NCI-CTCAE Grade A: Drug X B: Placebo C: Combination\n Post-baseline NCI-CTCAE Grade (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————————————————————\nAlanine Aminotransferase Measurement \n Not High 134 134 132 \n Not High 134 (100%) 134 (100%) 132 (100%) \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 1 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 3 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n 4 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n Missing 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \nC-Reactive Protein Measurement \n Not High 114 112 115 \n Not High 45 (39.5%) 55 (49.1%) 57 (49.6%) \n 1 18 (15.8%) 18 (16.1%) 19 (16.5%) \n 2 19 (16.7%) 10 (8.9%) 11 (9.6%) \n 3 22 (19.3%) 13 (11.6%) 20 (17.4%) \n 4 10 (8.8%) 16 (14.3%) 8 (7.0%) \n Missing 0 0 0 \n 1 8 10 7 \n Not High 5 (62.5%) 2 (20.0%) 2 (28.6%) \n 1 0 1 (10.0%) 0 \n 2 1 (12.5%) 3 (30.0%) 3 (42.9%) \n 3 1 (12.5%) 1 (10.0%) 0 \n 4 1 (12.5%) 3 (30.0%) 2 (28.6%) \n Missing 0 0 0 \n 2 2 6 7 \n Not High 1 (50.0%) 4 (66.7%) 4 (57.1%) \n 1 0 1 (16.7%) 2 (28.6%) \n 2 1 (50.0%) 1 (16.7%) 0 \n 3 0 0 0 \n 4 0 0 1 (14.3%) \n Missing 0 0 0 \n 3 7 4 3 \n Not High 3 (42.9%) 0 2 (66.7%) \n 1 2 (28.6%) 1 (25.0%) 1 (33.3%) \n 2 0 1 (25.0%) 0 \n 3 1 (14.3%) 1 (25.0%) 0 \n 4 1 (14.3%) 1 (25.0%) 0 \n Missing 0 0 0 \n 4 3 2 0 \n Not High 1 (33.3%) 0 0 \n 1 0 1 (50.0%) 0 \n 2 0 0 0 \n 3 1 (33.3%) 1 (50.0%) 0 \n 4 1 (33.3%) 0 0 \n Missing 0 0 0 \n Missing 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \nImmunoglobulin A Measurement \n Not High 119 116 113 \n Not High 55 (46.2%) 54 (46.6%) 51 (45.1%) \n 1 18 (15.1%) 11 (9.5%) 15 (13.3%) \n 2 14 (11.8%) 22 (19.0%) 19 (16.8%) \n 3 20 (16.8%) 19 (16.4%) 20 (17.7%) \n 4 12 (10.1%) 10 (8.6%) 8 (7.1%) \n Missing 0 0 0 \n 1 5 4 2 \n Not High 4 (80.0%) 1 (25.0%) 2 (100%) \n 1 0 0 0 \n 2 1 (20.0%) 1 (25.0%) 0 \n 3 0 2 (50.0%) 0 \n 4 0 0 0 \n Missing 0 0 0 \n 2 4 4 5 \n Not High 2 (50.0%) 3 (75.0%) 3 (60.0%) \n 1 1 (25.0%) 0 2 (40.0%) \n 2 0 0 0 \n 3 1 (25.0%) 0 0 \n 4 0 1 (25.0%) 0 \n Missing 0 0 0 \n 3 4 5 11 \n Not High 3 (75.0%) 1 (20.0%) 6 (54.5%) \n 1 0 1 (20.0%) 1 (9.1%) \n 2 1 (25.0%) 0 0 \n 3 0 2 (40.0%) 3 (27.3%) \n 4 0 1 (20.0%) 1 (9.1%) \n Missing 0 0 0 \n 4 2 5 1 \n Not High 0 3 (60.0%) 1 (100%) \n 1 0 0 0 \n 2 1 (50.0%) 1 (20.0%) 0 \n 3 0 0 0 \n 4 1 (50.0%) 1 (20.0%) 0 \n Missing 0 0 0 \n Missing 0 0 0 \n Not High 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Missing 0 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nPlease note that for each variant, the adlb dataset needs to be filtered on correct flags like WGRLOFL, WGRHIFL, et al., otherwise the layout function will not return the correct counts. There is an option to create a record for a lab test where no record is found at that visit. If you specified add_derived_type = \"PHANTOM\" & dtype_phantom_cond, you don’t have to use the h_adsl_adlb_merge_using_worst_flag function to preprocess your adlb dataset. Otherwise please follow the pre-processing steps below before applying the layout functions.\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadlb <- random.cdisc.data::cadlb\n\nadsl <- df_explicit_na(adsl)\nadlb <- df_explicit_na(adlb)\n\n# Please note that in real clinical data, population flag like SAFFL, and parameter category like PARCAT2 needs to be\n# selected properly.\nadsl_f <- adsl %>% filter(SAFFL == \"Y\")\nadlb <- adlb %>% filter(SAFFL == \"Y\")", "crumbs": [ "Tables", "Lab Results", @@ -3216,7 +3216,7 @@ "href": "tables/lab-results/lbt14.html#reproducibility", "title": "LBT14", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 17:58:37 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.0 2024-11-26 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.1 2024-11-26 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9090 2024-11-27 [1] https://p~\n teal.code * 0.5.0.9019 2024-11-27 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-27 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-27 [1] https://p~\n teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:54:38 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 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───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 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https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:56:07 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 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https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Concomitant Medications", @@ -3300,7 +3300,7 @@ "href": "tables/concomitant-medications/cmt01b.html#output", "title": "CMT01B", "section": "Output", - "text": "Output\n\n\nStandard Table with > 1 ATC Class Level\nTable Changing Class Levels\nTable with Classes Sorted by Frequency\nTable with Total Number of Treatments per Medication Class Suppressed\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n split_rows_by(\n \"ATC1\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC1)\n ) %>%\n split_rows_by(\n \"ATC2\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC2)\n ) %>%\n split_rows_by(\n \"ATC3\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC3)\n ) %>%\n split_rows_by(\n \"ATC4\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC4)\n ) %>%\n append_topleft(\" Other Treatment\") %>%\n summarize_num_patients(\n var = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n count_occurrences(vars = \"CMDECOD\", .indent_mods = -1L)\n\nresult <- build_table(\n lyt = lyt,\n df = adcm,\n alt_counts_df = adsl\n) %>%\n prune_table() %>%\n # Sort lowest level terms by descending frequency.\n sort_at_path(\n path = c(\"ATC1\", \"*\", \"ATC2\", \"*\", \"ATC3\", \"*\", \"ATC4\", \"*\", \"CMDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\n \n ATC Level 2 Text \n ATC Level 3 Text \n ATC Level 4 Text A: Drug X B: Placebo C: Combination\n Other Treatment (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one treatment 117 (87.3%) 116 (86.6%) 116 (87.9%) \nTotal number of treatments 415 414 460 \nATCCLAS1 A \n ATCCLAS2 A \n ATCCLAS3 A \n ATCCLAS4 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n Total number of treatments 134 137 143 \n medname A_2/3 53 (39.6%) 50 (37.3%) 56 (42.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 A p2 \n ATCCLAS2 A p2 \n ATCCLAS3 A p2 \n ATCCLAS4 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n Total number of treatments 58 66 64 \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 B \n ATCCLAS2 B \n ATCCLAS3 B \n ATCCLAS4 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n Total number of treatments 141 137 162 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_4/4 50 (37.3%) 45 (33.6%) 55 (41.7%) \nATCCLAS1 B p2 \n ATCCLAS2 B p2 \n ATCCLAS3 B p2 \n ATCCLAS4 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 B p3 \n ATCCLAS2 B p3 \n ATCCLAS3 B p3 \n ATCCLAS4 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 C \n ATCCLAS2 C \n ATCCLAS3 C \n ATCCLAS4 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p2 \n ATCCLAS2 C p2 \n ATCCLAS3 C p2 \n ATCCLAS4 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p3 \n ATCCLAS2 C p3 \n ATCCLAS3 C p3 \n ATCCLAS4 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n Total number of treatments 69 73 80 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n split_rows_by(\n \"ATC3\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC3)\n ) %>%\n split_rows_by(\n \"ATC2\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC2)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n count_occurrences(vars = \"CMDECOD\", .indent_mods = -1L) %>%\n append_topleft(\" Other Treatment\")\n\nresult <- build_table(\n lyt = lyt,\n df = adcm,\n alt_counts_df = adsl\n) %>%\n prune_table() %>%\n # Sort lowest level terms by descending frequency.\n sort_at_path(\n path = c(\"ATC3\", \"*\", \"ATC2\", \"*\", \"CMDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\n \n ATC Level 2 Text A: Drug X B: Placebo C: Combination\n Other Treatment (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one treatment 117 (87.3%) 116 (86.6%) 116 (87.9%) \nTotal number of treatments 415 414 460 \nATCCLAS3 A \n ATCCLAS2 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n Total number of treatments 134 137 143 \n medname A_2/3 53 (39.6%) 50 (37.3%) 56 (42.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS3 A p2 \n ATCCLAS2 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n Total number of treatments 58 66 64 \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS3 B \n ATCCLAS2 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n Total number of treatments 141 137 162 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_4/4 50 (37.3%) 45 (33.6%) 55 (41.7%) \nATCCLAS3 B p2 \n ATCCLAS2 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS3 B p3 \n ATCCLAS2 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS3 C \n ATCCLAS2 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS3 C p2 \n ATCCLAS2 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS3 C p3 \n ATCCLAS2 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n Total number of treatments 69 73 80 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCode# In progress\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\n \"ATC1\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC1)\n ) %>%\n split_rows_by(\n \"ATC2\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC2)\n ) %>%\n split_rows_by(\n \"ATC3\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC3)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n split_rows_by(\n \"ATC4\",\n child_labels = \"visible\",\n nested = TRUE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC4)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\"\n )\n ) %>%\n count_occurrences(vars = \"CMDECOD\", .indent_mods = -1L) %>%\n append_topleft(\" Other Treatment\")\n\nresult <- build_table(\n lyt = lyt,\n df = adcm,\n alt_counts_df = adsl\n) %>%\n prune_table() %>%\n # Sort lowest level terms by descending frequency.\n sort_at_path(\n path = c(\"ATC1\", \"*\", \"ATC2\", \"*\", \"ATC3\", \"*\", \"ATC4\", \"*\", \"CMDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\n \n ATC Level 2 Text \n ATC Level 3 Text \n ATC Level 4 Text A: Drug X B: Placebo C: Combination\n Other Treatment (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————————————————————————————————\nATCCLAS1 A \n ATCCLAS2 A \n ATCCLAS3 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n Total number of treatments 134 137 143 \n ATCCLAS4 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n medname A_2/3 53 (39.6%) 50 (37.3%) 56 (42.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 A p2 \n ATCCLAS2 A p2 \n ATCCLAS3 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n Total number of treatments 58 66 64 \n ATCCLAS4 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 B \n ATCCLAS2 B \n ATCCLAS3 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n Total number of treatments 141 137 162 \n ATCCLAS4 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_4/4 50 (37.3%) 45 (33.6%) 55 (41.7%) \nATCCLAS1 B p2 \n ATCCLAS2 B p2 \n ATCCLAS3 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n ATCCLAS4 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 B p3 \n ATCCLAS2 B p3 \n ATCCLAS3 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n ATCCLAS4 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 C \n ATCCLAS2 C \n ATCCLAS3 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n ATCCLAS4 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p2 \n ATCCLAS2 C p2 \n ATCCLAS3 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n ATCCLAS4 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p3 \n ATCCLAS2 C p3 \n ATCCLAS3 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n Total number of treatments 69 73 80 \n ATCCLAS4 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadcm <- random.cdisc.data::cadcm\n\nadcm$CMSEQ <- as.factor(adcm$CMSEQ)\n\nadsl <- df_explicit_na(adsl)\nadcm <- df_explicit_na(adcm)\n\n# Keep only safety-evaluable patients and concomitant medications\nadsl <- adsl %>%\n filter(SAFFL == \"Y\")\n\nadcm <- adcm %>%\n filter(SAFFL == \"Y\" & ATIREL == \"CONCOMITANT\")", + "text": "Output\n\n\nStandard Table with > 1 ATC Class Level\nTable Changing Class Levels\nTable with Classes Sorted by Frequency\nTable with Total Number of Treatments per Medication Class Suppressed\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n split_rows_by(\n \"ATC1\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC1)\n ) %>%\n split_rows_by(\n \"ATC2\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC2)\n ) %>%\n split_rows_by(\n \"ATC3\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC3)\n ) %>%\n split_rows_by(\n \"ATC4\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC4)\n ) %>%\n append_topleft(\" Other Treatment\") %>%\n summarize_num_patients(\n var = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n count_occurrences(vars = \"CMDECOD\", .indent_mods = -1L)\n\nresult <- build_table(\n lyt = lyt,\n df = adcm,\n alt_counts_df = adsl\n) %>%\n prune_table() %>%\n # Sort lowest level terms by descending frequency.\n sort_at_path(\n path = c(\"ATC1\", \"*\", \"ATC2\", \"*\", \"ATC3\", \"*\", \"ATC4\", \"*\", \"CMDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nATC Level 1 Text \n ATC Level 2 Text \n ATC Level 3 Text \n ATC Level 4 Text A: Drug X B: Placebo C: Combination\n Other Treatment (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one treatment 117 (87.3%) 116 (86.6%) 116 (87.9%) \nTotal number of treatments 415 414 460 \nATCCLAS1 A \n ATCCLAS2 A \n ATCCLAS3 A \n ATCCLAS4 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n Total number of treatments 134 137 143 \n medname A_2/3 53 (39.6%) 50 (37.3%) 56 (42.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 A p2 \n ATCCLAS2 A p2 \n ATCCLAS3 A p2 \n ATCCLAS4 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n Total number of treatments 58 66 64 \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 B \n ATCCLAS2 B \n ATCCLAS3 B \n ATCCLAS4 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n Total number of treatments 141 137 162 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_4/4 50 (37.3%) 45 (33.6%) 55 (41.7%) \nATCCLAS1 B p2 \n ATCCLAS2 B p2 \n ATCCLAS3 B p2 \n ATCCLAS4 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 B p3 \n ATCCLAS2 B p3 \n ATCCLAS3 B p3 \n ATCCLAS4 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 C \n ATCCLAS2 C \n ATCCLAS3 C \n ATCCLAS4 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p2 \n ATCCLAS2 C p2 \n ATCCLAS3 C p2 \n ATCCLAS4 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p3 \n ATCCLAS2 C p3 \n ATCCLAS3 C p3 \n ATCCLAS4 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n Total number of treatments 69 73 80 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n analyze_num_patients(\n vars = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n split_rows_by(\n \"ATC3\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC3)\n ) %>%\n split_rows_by(\n \"ATC2\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC2)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n count_occurrences(vars = \"CMDECOD\", .indent_mods = -1L) %>%\n append_topleft(\" Other Treatment\")\n\nresult <- build_table(\n lyt = lyt,\n df = adcm,\n alt_counts_df = adsl\n) %>%\n prune_table() %>%\n # Sort lowest level terms by descending frequency.\n sort_at_path(\n path = c(\"ATC3\", \"*\", \"ATC2\", \"*\", \"CMDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nATC Level 3 Text \n ATC Level 2 Text A: Drug X B: Placebo C: Combination\n Other Treatment (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————————————————————\nTotal number of patients with at least one treatment 117 (87.3%) 116 (86.6%) 116 (87.9%) \nTotal number of treatments 415 414 460 \nATCCLAS3 A \n ATCCLAS2 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n Total number of treatments 134 137 143 \n medname A_2/3 53 (39.6%) 50 (37.3%) 56 (42.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS3 A p2 \n ATCCLAS2 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n Total number of treatments 58 66 64 \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS3 B \n ATCCLAS2 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n Total number of treatments 141 137 162 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_4/4 50 (37.3%) 45 (33.6%) 55 (41.7%) \nATCCLAS3 B p2 \n ATCCLAS2 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS3 B p3 \n ATCCLAS2 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS3 C \n ATCCLAS2 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS3 C p2 \n ATCCLAS2 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS3 C p3 \n ATCCLAS2 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n Total number of treatments 69 73 80 \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCode# In progress\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\n \"ATC1\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC1)\n ) %>%\n split_rows_by(\n \"ATC2\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC2)\n ) %>%\n split_rows_by(\n \"ATC3\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC3)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n count_by = \"CMSEQ\",\n .stats = c(\"unique\", \"nonunique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\",\n nonunique = \"Total number of treatments\"\n )\n ) %>%\n split_rows_by(\n \"ATC4\",\n child_labels = \"visible\",\n nested = TRUE,\n indent_mod = -1L,\n split_fun = split_fun,\n label_pos = \"topleft\",\n split_label = obj_label(adcm$ATC4)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = c(\"unique\"),\n .labels = c(\n unique = \"Total number of patients with at least one treatment\"\n )\n ) %>%\n count_occurrences(vars = \"CMDECOD\", .indent_mods = -1L) %>%\n append_topleft(\" Other Treatment\")\n\nresult <- build_table(\n lyt = lyt,\n df = adcm,\n alt_counts_df = adsl\n) %>%\n prune_table() %>%\n # Sort lowest level terms by descending frequency.\n sort_at_path(\n path = c(\"ATC1\", \"*\", \"ATC2\", \"*\", \"ATC3\", \"*\", \"ATC4\", \"*\", \"CMDECOD\"),\n scorefun = score_occurrences\n )\n\nresult\n\nATC Level 1 Text \n ATC Level 2 Text \n ATC Level 3 Text \n ATC Level 4 Text A: Drug X B: Placebo C: Combination\n Other Treatment (N=134) (N=134) (N=132) \n———————————————————————————————————————————————————————————————————————————————————————————————————————\nATCCLAS1 A \n ATCCLAS2 A \n ATCCLAS3 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n Total number of treatments 134 137 143 \n ATCCLAS4 A \n Total number of patients with at least one treatment 75 (56.0%) 79 (59.0%) 81 (61.4%) \n medname A_2/3 53 (39.6%) 50 (37.3%) 56 (42.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 A p2 \n ATCCLAS2 A p2 \n ATCCLAS3 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n Total number of treatments 58 66 64 \n ATCCLAS4 A p2 \n Total number of patients with at least one treatment 45 (33.6%) 54 (40.3%) 48 (36.4%) \n medname A_3/3 45 (33.6%) 54 (40.3%) 48 (36.4%) \nATCCLAS1 B \n ATCCLAS2 B \n ATCCLAS3 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n Total number of treatments 141 137 162 \n ATCCLAS4 B \n Total number of patients with at least one treatment 83 (61.9%) 74 (55.2%) 88 (66.7%) \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_4/4 50 (37.3%) 45 (33.6%) 55 (41.7%) \nATCCLAS1 B p2 \n ATCCLAS2 B p2 \n ATCCLAS3 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n ATCCLAS4 B p2 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 B p3 \n ATCCLAS2 B p3 \n ATCCLAS3 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n Total number of treatments 75 82 83 \n ATCCLAS4 B p3 \n Total number of patients with at least one treatment 52 (38.8%) 57 (42.5%) 59 (44.7%) \n medname B_1/4 52 (38.8%) 57 (42.5%) 59 (44.7%) \nATCCLAS1 C \n ATCCLAS2 C \n ATCCLAS3 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n ATCCLAS4 C \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p2 \n ATCCLAS2 C p2 \n ATCCLAS3 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n Total number of treatments 140 140 155 \n ATCCLAS4 C p2 \n Total number of patients with at least one treatment 82 (61.2%) 84 (62.7%) 89 (67.4%) \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_1/2 51 (38.1%) 50 (37.3%) 56 (42.4%) \nATCCLAS1 C p3 \n ATCCLAS2 C p3 \n ATCCLAS3 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n Total number of treatments 69 73 80 \n ATCCLAS4 C p3 \n Total number of patients with at least one treatment 52 (38.8%) 58 (43.3%) 60 (45.5%) \n medname C_2/2 52 (38.8%) 58 (43.3%) 60 (45.5%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadcm <- random.cdisc.data::cadcm\n\nadcm$CMSEQ <- as.factor(adcm$CMSEQ)\n\nadsl <- df_explicit_na(adsl)\nadcm <- df_explicit_na(adcm)\n\n# Keep only safety-evaluable patients and concomitant medications\nadsl <- adsl %>%\n filter(SAFFL == \"Y\")\n\nadcm <- adcm %>%\n filter(SAFFL == \"Y\" & ATIREL == \"CONCOMITANT\")", "crumbs": [ "Tables", "Concomitant Medications", @@ -3324,7 +3324,7 @@ "href": "tables/concomitant-medications/cmt01b.html#reproducibility", "title": "CMT01B", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:00:54 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 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RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:56:55 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype 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[1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9091 2024-11-30 [1] https://p~\n teal.code * 0.5.0.9020 2024-11-30 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-30 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-30 [1] https://p~\n teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] 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"tables/adverse-events/aet05_all.html#reproducibility", "title": "AET05_ALL", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:03:06 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] 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renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 17:59:06 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n 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0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 2024-10-22 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n MASS 7.3-61 2024-06-13 [2] CRAN (R 4.4.1)\n Matrix 1.7-1 2024-10-18 [1] RSPM\n memoise 2.0.1 2021-11-26 [1] RSPM\n mime 0.12 2021-09-28 [1] RSPM\n multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1)\n munsell 0.5.1 2024-04-01 [1] RSPM\n mvtnorm 1.3-2 2024-11-04 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1)\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n promises 1.3.2 2024-11-28 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9091 2024-11-30 [1] https://p~\n teal.code * 0.5.0.9020 2024-11-30 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-30 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-30 [1] https://p~\n teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Adverse Events", @@ -3444,7 +3444,7 @@ "href": "tables/adverse-events/aet04.html#output", "title": "AET04", "section": "Output", - "text": "Output\n\n\nStandard Table\nTable with Fill-In of Treatment Groups\nTable with Fill-In of Grades\nTable with Collapsing of Grades\nTable Using Worst Grade Flags from ADAE\nTable with an Incidence Rate \\(\\geq\\) 40%, Totals Restricted\nTable with an Incidence Rate \\(\\geq\\) X%, Totals Unrestricted\nTable with an Incidence Rate \\(\\geq\\) 58 Patients\nTable with a Difference in Incidence Rate \\(\\geq\\) 10%\nTable with an Incidence Rate \\(\\geq\\) 5%, SOCs < 5% Removed\nTable with an Incidence Rate \\(\\geq\\) 40%, All SOCs w/o Preferred Terms Removed\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadae2 <- adae %>% filter(ACTARM == \"A: Drug X\")\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae2, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 0 0 \n Grade 1-2 10 (7.5%) 0 0 \n 1 5 (3.7%) 0 0 \n 2 5 (3.7%) 0 0 \n Grade 3-4 26 (19.4%) 0 0 \n 3 13 (9.7%) 0 0 \n 4 13 (9.7%) 0 0 \n Grade 5 64 (47.8%) 0 0 \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 0 0 \n Grade 1-2 68 (50.7%) 0 0 \n 1 27 (20.1%) 0 0 \n 2 41 (30.6%) 0 0 \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 0 0 \n Grade 1-2 45 (33.6%) 0 0 \n 1 45 (33.6%) 0 0 \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 0 0 \n Grade 1-2 41 (30.6%) 0 0 \n 2 41 (30.6%) 0 0 \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 0 0 \n Grade 3-4 22 (16.4%) 0 0 \n 3 22 (16.4%) 0 0 \n Grade 5 42 (31.3%) 0 0 \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 0 0 \n Grade 5 42 (31.3%) 0 0 \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 0 0 \n Grade 3-4 38 (28.4%) 0 0 \n 3 38 (28.4%) 0 0 \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 0 0 \n Grade 1-2 23 (17.2%) 0 0 \n 1 23 (17.2%) 0 0 \n Grade 3-4 39 (29.1%) 0 0 \n 3 39 (29.1%) 0 0 \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 0 0 \n Grade 3-4 39 (29.1%) 0 0 \n 3 39 (29.1%) 0 0 \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 0 0 \n Grade 1-2 38 (28.4%) 0 0 \n 1 38 (28.4%) 0 0 \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 0 0 \n Grade 5 38 (28.4%) 0 0 \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 0 0 \n Grade 5 38 (28.4%) 0 0 \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 0 0 \n Grade 1-2 37 (27.6%) 0 0 \n 1 37 (27.6%) 0 0 \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 0 0 \n Grade 1-2 37 (27.6%) 0 0 \n 1 37 (27.6%) 0 0 \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 0 0 \n Grade 3-4 36 (26.9%) 0 0 \n 4 36 (26.9%) 0 0 \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 0 0 \n Grade 3-4 36 (26.9%) 0 0 \n 4 36 (26.9%) 0 0 \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 0 0 \n Grade 1-2 28 (20.9%) 0 0 \n 2 28 (20.9%) 0 0 \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 0 0 \n Grade 1-2 28 (20.9%) 0 0 \n 2 28 (20.9%) 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae, alt_counts_df = adsl) %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 1 0 0 0 \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 2 0 0 0 \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 4 0 0 0 \n Grade 5 0 0 0 \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 4 0 0 0 \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 4 0 0 0 \n Grade 5 0 0 0 \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 1 0 0 0 \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 1 0 0 0 \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 3 0 0 0 \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 5 0 0 0 \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 3 0 0 0 \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 5 0 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodegrade_groups_1 <- list(\n \"Grade 1-2\" = c(\"1\", \"2\"),\n \"Grade 3-5\" = c(\"3\", \"4\", \"5\")\n)\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups_1,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups_1,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-5 90 (67.2%) 83 (61.9%) 93 (70.5%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-5 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-5 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-5 64 (47.8%) 54 (40.3%) 68 (51.5%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 3-5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-5 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 3-5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 3-5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-5 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-5 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCode# No Worst Grade Flags found in the ADAE data set.\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Simple wrapper to return subset ADAE to a threshold of xx%.\nget_adae_trimmed <- function(adsl, adae, cutoff_rate) {\n n_per_arm <- adsl %>%\n dplyr::count(ACTARM)\n\n anl_terms <- adae %>%\n dplyr::group_by(ACTARM, AEBODSYS, AEDECOD) %>%\n dplyr::count(\n unique_terms = n_distinct(USUBJID)\n ) %>%\n dplyr::select(-n) %>%\n dplyr::ungroup()\n\n anl_terms <- dplyr::left_join(\n anl_terms,\n n_per_arm,\n by = \"ACTARM\"\n ) %>%\n dplyr::mutate(\n ae_rate = unique_terms / n\n ) %>%\n dplyr::filter(ae_rate >= cutoff_rate) %>%\n dplyr::select(AEDECOD) %>%\n unique()\n\n anl <- dplyr::left_join(\n anl_terms,\n adae,\n by = \"AEDECOD\"\n )\n anl\n}\n\nadae6 <- get_adae_trimmed(adsl, adae, cutoff_rate = 0.4)\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae6, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nVariant 7 was not created. With this variant, the SOC level is not trimmed (even if there are no terms left).\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodecutoff <- 58L\nrow_condition <- has_count_in_any_col(atleast = cutoff, col_names = levels(adsl$ACTARM))\n\nresult <- prune_table(raw_table, keep_content_rows(my_row_condition(row_condition)))\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodecutoff <- 0.1\nrow_condition <- has_fractions_difference(atleast = cutoff, col_names = levels(adsl$ACTARM))\n\nresult <- prune_table(raw_table, keep_content_rows(my_row_condition(row_condition)))\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nVariant 10 was not done With this variant, SOC levels above the threshold are still in the table even if there are no terms left.\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodecutoff <- 0.4\nrow_condition <- has_fraction_in_any_col(atleast = cutoff, col_names = levels(adsl$ACTARM))\n\nresult <- prune_table(raw_table, keep_content_rows(my_row_condition(row_condition)))\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl) %>% filter(TRT01A != \"<Missing>\")\nadae <- df_explicit_na(adae) %>%\n var_relabel(\n AEBODSYS = \"MedDRA System Organ Class\",\n AEDECOD = \"MedDRA Preferred Term\"\n ) %>%\n filter(\n ANL01FL == \"Y\",\n AETOXGR != \"<Missing>\"\n )\n\n# Pre-Processing\ngrade_groups <- list(\n \"Grade 1-2\" = c(\"1\", \"2\"),\n \"Grade 3-4\" = c(\"3\", \"4\"),\n \"Grade 5\" = \"5\"\n)\nadae$TOTAL_VAR <- \"- Any adverse events - \"\n\n# Helper function to avoid filtering also the first part of the table, where general information is given.\nmy_row_condition <- function(row_fnc_condition) {\n function(table_row) {\n if (indent_mod(table_row) == 0) {\n return(TRUE)\n } else {\n row_fnc_condition(table_row)\n }\n }\n}\n\n# Helper function to calculate sum from first nested row\nscore_all_sum <- function(tt) {\n cleaf <- collect_leaves(tt)[[1]]\n if (NROW(cleaf) == 0) {\n stop(\"score_all_sum score function used at subtable [\", obj_name(tt), \"] that has no content.\")\n }\n sum(sapply(row_values(cleaf), function(cv) cv[1]))\n}\n\n# Raw table used by variant 8/10\nraw_table <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\") %>%\n build_table(adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )", + "text": "Output\n\n\nStandard Table\nTable with Fill-In of Treatment Groups\nTable with Fill-In of Grades\nTable with Collapsing of Grades\nTable Using Worst Grade Flags from ADAE\nTable with an Incidence Rate \\(\\geq\\) 40%, Totals Restricted\nTable with an Incidence Rate \\(\\geq\\) X%, Totals Unrestricted\nTable with an Incidence Rate \\(\\geq\\) 58 Patients\nTable with a Difference in Incidence Rate \\(\\geq\\) 10%\nTable with an Incidence Rate \\(\\geq\\) 5%, SOCs < 5% Removed\nTable with an Incidence Rate \\(\\geq\\) 40%, All SOCs w/o Preferred Terms Removed\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadae2 <- adae %>% filter(ACTARM == \"A: Drug X\")\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae2, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 0 0 \n Grade 1-2 10 (7.5%) 0 0 \n 1 5 (3.7%) 0 0 \n 2 5 (3.7%) 0 0 \n Grade 3-4 26 (19.4%) 0 0 \n 3 13 (9.7%) 0 0 \n 4 13 (9.7%) 0 0 \n Grade 5 64 (47.8%) 0 0 \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 0 0 \n Grade 1-2 68 (50.7%) 0 0 \n 1 27 (20.1%) 0 0 \n 2 41 (30.6%) 0 0 \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 0 0 \n Grade 1-2 45 (33.6%) 0 0 \n 1 45 (33.6%) 0 0 \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 0 0 \n Grade 1-2 41 (30.6%) 0 0 \n 2 41 (30.6%) 0 0 \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 0 0 \n Grade 3-4 22 (16.4%) 0 0 \n 3 22 (16.4%) 0 0 \n Grade 5 42 (31.3%) 0 0 \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 0 0 \n Grade 5 42 (31.3%) 0 0 \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 0 0 \n Grade 3-4 38 (28.4%) 0 0 \n 3 38 (28.4%) 0 0 \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 0 0 \n Grade 1-2 23 (17.2%) 0 0 \n 1 23 (17.2%) 0 0 \n Grade 3-4 39 (29.1%) 0 0 \n 3 39 (29.1%) 0 0 \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 0 0 \n Grade 3-4 39 (29.1%) 0 0 \n 3 39 (29.1%) 0 0 \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 0 0 \n Grade 1-2 38 (28.4%) 0 0 \n 1 38 (28.4%) 0 0 \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 0 0 \n Grade 5 38 (28.4%) 0 0 \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 0 0 \n Grade 5 38 (28.4%) 0 0 \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 0 0 \n Grade 1-2 37 (27.6%) 0 0 \n 1 37 (27.6%) 0 0 \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 0 0 \n Grade 1-2 37 (27.6%) 0 0 \n 1 37 (27.6%) 0 0 \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 0 0 \n Grade 3-4 36 (26.9%) 0 0 \n 4 36 (26.9%) 0 0 \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 0 0 \n Grade 3-4 36 (26.9%) 0 0 \n 4 36 (26.9%) 0 0 \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 0 0 \n Grade 1-2 28 (20.9%) 0 0 \n 2 28 (20.9%) 0 0 \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 0 0 \n Grade 1-2 28 (20.9%) 0 0 \n 2 28 (20.9%) 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodelyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae, alt_counts_df = adsl) %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 1 0 0 0 \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 2 0 0 0 \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 4 0 0 0 \n Grade 5 0 0 0 \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 4 0 0 0 \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 4 0 0 0 \n Grade 5 0 0 0 \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 1 0 0 0 \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 1 0 0 0 \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 0 0 0 \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 0 0 0 \n 3 0 0 0 \n 4 0 0 0 \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 3 0 0 0 \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 5 0 0 0 \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 1-2 0 0 0 \n 1 0 0 0 \n 2 0 0 0 \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 3 0 0 0 \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 5 0 0 0 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodegrade_groups_1 <- list(\n \"Grade 1-2\" = c(\"1\", \"2\"),\n \"Grade 3-5\" = c(\"3\", \"4\", \"5\")\n)\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups_1,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups_1,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-5 90 (67.2%) 83 (61.9%) 93 (70.5%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-5 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-5 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-5 64 (47.8%) 54 (40.3%) 68 (51.5%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 3-5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-5 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 3-5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 3-5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-5 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-5 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCode# No Worst Grade Flags found in the ADAE data set.\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCode# Simple wrapper to return subset ADAE to a threshold of xx%.\nget_adae_trimmed <- function(adsl, adae, cutoff_rate) {\n n_per_arm <- adsl %>%\n dplyr::count(ACTARM)\n\n anl_terms <- adae %>%\n dplyr::group_by(ACTARM, AEBODSYS, AEDECOD) %>%\n dplyr::count(\n unique_terms = n_distinct(USUBJID)\n ) %>%\n dplyr::select(-n) %>%\n dplyr::ungroup()\n\n anl_terms <- dplyr::left_join(\n anl_terms,\n n_per_arm,\n by = \"ACTARM\"\n ) %>%\n dplyr::mutate(\n ae_rate = unique_terms / n\n ) %>%\n dplyr::filter(ae_rate >= cutoff_rate) %>%\n dplyr::select(AEDECOD) %>%\n unique()\n\n anl <- dplyr::left_join(\n anl_terms,\n adae,\n by = \"AEDECOD\"\n )\n anl\n}\n\nadae6 <- get_adae_trimmed(adsl, adae, cutoff_rate = 0.4)\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\")\n\nresult <- lyt %>%\n build_table(adae6, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nVariant 7 was not created. With this variant, the SOC level is not trimmed (even if there are no terms left).\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodecutoff <- 58L\nrow_condition <- has_count_in_any_col(atleast = cutoff, col_names = levels(adsl$ACTARM))\n\nresult <- prune_table(raw_table, keep_content_rows(my_row_condition(row_condition)))\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodecutoff <- 0.1\nrow_condition <- has_fractions_difference(atleast = cutoff, col_names = levels(adsl$ACTARM))\n\nresult <- prune_table(raw_table, keep_content_rows(my_row_condition(row_condition)))\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nVariant 10 was not done With this variant, SOC levels above the threshold are still in the table even if there are no terms left.\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodecutoff <- 0.4\nrow_condition <- has_fraction_in_any_col(atleast = cutoff, col_names = levels(adsl$ACTARM))\n\nresult <- prune_table(raw_table, keep_content_rows(my_row_condition(row_condition)))\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Grade (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————————————————————\n- Any adverse events - \n - Any Grade - 100 (74.6%) 98 (73.1%) 103 (78.0%) \n Grade 1-2 10 (7.5%) 15 (11.2%) 10 (7.6%) \n 1 5 (3.7%) 7 (5.2%) 4 (3.0%) \n 2 5 (3.7%) 8 (6.0%) 6 (4.5%) \n Grade 3-4 26 (19.4%) 31 (23.1%) 29 (22.0%) \n 3 13 (9.7%) 13 (9.7%) 14 (10.6%) \n 4 13 (9.7%) 18 (13.4%) 15 (11.4%) \n Grade 5 64 (47.8%) 52 (38.8%) 64 (48.5%) \ncl A.1 \n - Overall - \n - Any Grade - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n Grade 1-2 68 (50.7%) 58 (43.3%) 76 (57.6%) \n 1 27 (20.1%) 19 (14.2%) 34 (25.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n dcd A.1.1.1.1 \n - Any Grade - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n Grade 1-2 45 (33.6%) 31 (23.1%) 52 (39.4%) \n 1 45 (33.6%) 31 (23.1%) 52 (39.4%) \n dcd A.1.1.1.2 \n - Any Grade - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n Grade 1-2 41 (30.6%) 39 (29.1%) 42 (31.8%) \n 2 41 (30.6%) 39 (29.1%) 42 (31.8%) \ncl B.2 \n - Overall - \n - Any Grade - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n Grade 1-2 23 (17.2%) 22 (16.4%) 28 (21.2%) \n 1 23 (17.2%) 22 (16.4%) 28 (21.2%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \n dcd B.2.2.3.1 \n - Any Grade - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n Grade 1-2 38 (28.4%) 40 (29.9%) 45 (34.1%) \n 1 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Grade - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n Grade 3-4 39 (29.1%) 34 (25.4%) 46 (34.8%) \n 3 39 (29.1%) 34 (25.4%) 46 (34.8%) \ncl D.1 \n - Overall - \n - Any Grade - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n Grade 3-4 22 (16.4%) 22 (16.4%) 22 (16.7%) \n 3 22 (16.4%) 22 (16.4%) 22 (16.7%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.1.1 \n - Any Grade - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n Grade 5 42 (31.3%) 32 (23.9%) 46 (34.8%) \n dcd D.1.1.4.2 \n - Any Grade - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n Grade 3-4 38 (28.4%) 34 (25.4%) 40 (30.3%) \n 3 38 (28.4%) 34 (25.4%) 40 (30.3%) \ncl D.2 \n - Overall - \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \n dcd D.2.1.5.3 \n - Any Grade - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n Grade 1-2 37 (27.6%) 46 (34.3%) 50 (37.9%) \n 1 37 (27.6%) 46 (34.3%) 50 (37.9%) \ncl C.2 \n - Overall - \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n dcd C.2.1.2.1 \n - Any Grade - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n Grade 1-2 28 (20.9%) 36 (26.9%) 48 (36.4%) \n 2 28 (20.9%) 36 (26.9%) 48 (36.4%) \ncl B.1 \n - Overall - \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \n dcd B.1.1.1.1 \n - Any Grade - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n Grade 5 38 (28.4%) 37 (27.6%) 36 (27.3%) \ncl C.1 \n - Overall - \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Grade - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n Grade 3-4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n 4 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl) %>% filter(TRT01A != \"<Missing>\")\nadae <- df_explicit_na(adae) %>%\n var_relabel(\n AEBODSYS = \"MedDRA System Organ Class\",\n AEDECOD = \"MedDRA Preferred Term\"\n ) %>%\n filter(\n ANL01FL == \"Y\",\n AETOXGR != \"<Missing>\"\n )\n\n# Pre-Processing\ngrade_groups <- list(\n \"Grade 1-2\" = c(\"1\", \"2\"),\n \"Grade 3-4\" = c(\"3\", \"4\"),\n \"Grade 5\" = \"5\"\n)\nadae$TOTAL_VAR <- \"- Any adverse events - \"\n\n# Helper function to avoid filtering also the first part of the table, where general information is given.\nmy_row_condition <- function(row_fnc_condition) {\n function(table_row) {\n if (indent_mod(table_row) == 0) {\n return(TRUE)\n } else {\n row_fnc_condition(table_row)\n }\n }\n}\n\n# Helper function to calculate sum from first nested row\nscore_all_sum <- function(tt) {\n cleaf <- collect_leaves(tt)[[1]]\n if (NROW(cleaf) == 0) {\n stop(\"score_all_sum score function used at subtable [\", obj_name(tt), \"] that has no content.\")\n }\n sum(sapply(row_values(cleaf), function(cv) cv[1]))\n}\n\n# Raw table used by variant 8/10\nraw_table <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n split_rows_by(\n var = \"TOTAL_VAR\",\n label_pos = \"hidden\",\n child_labels = \"visible\",\n indent_mod = -1L\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 7L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 6L\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = FALSE,\n split_fun = drop_split_levels,\n split_label = var_labels(adae)[[\"AEBODSYS\"]],\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n split_fun = add_overall_level(\"- Overall -\", trim = TRUE),\n split_label = var_labels(adae)[[\"AEDECOD\"]],\n label_pos = \"topleft\"\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = \"- Any Grade -\",\n .indent_mods = 6L\n ) %>%\n count_occurrences_by_grade(\n var = \"AETOXGR\",\n grade_groups = grade_groups,\n .indent_mods = 5L\n ) %>%\n append_topleft(\" Grade\") %>%\n build_table(adae, alt_counts_df = adsl) %>%\n prune_table() %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = score_all_sum,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = score_all_sum,\n decreasing = TRUE\n )", "crumbs": [ "Tables", "Adverse Events", @@ -3468,7 +3468,7 @@ "href": "tables/adverse-events/aet04.html#reproducibility", "title": "AET04", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:04:05 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n emmeans 1.10.5 2024-10-14 [1] RSPM\n estimability 1.5.1 2024-05-12 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n fontawesome 0.5.3 2024-11-16 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1)\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n geepack 1.3.12 2024-09-23 [1] RSPM\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n httpuv 1.6.15 2024-03-26 [1] RSPM\n jquerylib 0.1.4 2021-04-26 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n later 1.4.0 2024-11-26 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n logger 0.4.0 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file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:00:56 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN 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recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Adverse Events", @@ -3540,7 +3540,7 @@ "href": "tables/adverse-events/aet01.html#reproducibility", "title": "AET01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:05:40 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 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https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rcpp 1.0.13-1 2024-11-02 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1)\n sass 0.4.9 2024-03-15 [1] RSPM\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n shiny * 1.9.1 2024-08-01 [1] RSPM\n shinycssloaders 1.1.0 2024-07-30 [1] RSPM\n shinyjs 2.1.0 2021-12-23 [1] RSPM\n shinyvalidate 0.1.3 2023-10-04 [1] RSPM\n shinyWidgets 0.8.7 2024-09-23 [1] RSPM\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n teal * 0.15.2.9091 2024-11-30 [1] https://p~\n teal.code * 0.5.0.9020 2024-11-30 [1] https://p~\n teal.data * 0.6.0.9021 2024-11-30 [1] https://p~\n teal.logger 0.3.0.9002 2024-11-30 [1] https://p~\n teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~\n teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~\n teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~\n teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~\n teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n tern.gee 0.1.5.9004 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Adverse Events", @@ -3552,7 +3552,7 @@ "href": "tables/adverse-events/aet03.html#output", "title": "AET03", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodegrade_groups <- list(\"- Any Intensity -\" = c(\"MILD\", \"MODERATE\", \"SEVERE\", \"LIFE THREATENING\"))\n\nsplit_fun <- trim_levels_in_group\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n count_occurrences_by_grade(\n var = \"ASEV\",\n grade_groups = grade_groups\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun(\"ASEV\"),\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_occurrences_by_grade(\n var = \"ASEV\",\n grade_groups = grade_groups\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n nested = TRUE,\n indent_mod = -1L,\n split_fun = split_fun(\"ASEV\"),\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEDECOD)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = c(\"- Any Intensity -\")\n ) %>%\n count_occurrences_by_grade(\n var = \"ASEV\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae, \"AESEV\", indent = 2L)\n\nresult <- lyt %>%\n build_table(\n adae,\n alt_counts_df = adsl\n ) %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = cont_n_allcols,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = cont_n_allcols,\n decreasing = TRUE\n )\n\nresult\n\n \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Severity/Intensity (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————\n- Any Intensity - 100 (74.6%) 98 (73.1%) 103 (78.0%) \nMILD 5 (3.7%) 7 (5.2%) 4 (3.0%) \nMODERATE 17 (12.7%) 21 (15.7%) 20 (15.2%) \nSEVERE 77 (57.5%) 69 (51.5%) 77 (58.3%) \nLIFE THREATENING 1 (0.7%) 1 (0.7%) 2 (1.5%) \ncl A.1 \n - Any Intensity - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n MILD 27 (20.1%) 19 (14.2%) 34 (25.8%) \n MODERATE 40 (29.9%) 39 (29.1%) 41 (31.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \n dcd A.1.1.1.1 \n - Any Intensity - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n MILD 45 (33.6%) 31 (23.1%) 51 (38.6%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd A.1.1.1.2 \n - Any Intensity - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n MODERATE 40 (29.9%) 39 (29.1%) 41 (31.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \ncl B.2 \n - Any Intensity - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n MILD 23 (17.2%) 22 (16.4%) 28 (21.2%) \n MODERATE 38 (28.4%) 34 (25.4%) 45 (34.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \n dcd B.2.2.3.1 \n - Any Intensity - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n MILD 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Intensity - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n MODERATE 38 (28.4%) 34 (25.4%) 45 (34.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \ncl D.1 \n - Any Intensity - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n MODERATE 21 (15.7%) 22 (16.4%) 22 (16.7%) \n SEVERE 42 (31.3%) 32 (23.9%) 44 (33.3%) \n LIFE THREATENING 1 (0.7%) 0 2 (1.5%) \n dcd D.1.1.1.1 \n - Any Intensity - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n SEVERE 42 (31.3%) 32 (23.9%) 45 (34.1%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd D.1.1.4.2 \n - Any Intensity - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n MODERATE 37 (27.6%) 34 (25.4%) 39 (29.5%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \ncl D.2 \n - Any Intensity - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n MILD 37 (27.6%) 46 (34.3%) 49 (37.1%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd D.2.1.5.3 \n - Any Intensity - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n MILD 37 (27.6%) 46 (34.3%) 49 (37.1%) \n LIFE THREATENING 0 0 1 (0.8%) \ncl C.2 \n - Any Intensity - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n MODERATE 28 (20.9%) 36 (26.9%) 47 (35.6%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd C.2.1.2.1 \n - Any Intensity - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n MODERATE 28 (20.9%) 36 (26.9%) 47 (35.6%) \n LIFE THREATENING 0 0 1 (0.8%) \ncl B.1 \n - Any Intensity - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n SEVERE 38 (28.4%) 36 (26.9%) 36 (27.3%) \n LIFE THREATENING 0 1 (0.7%) 0 \n dcd B.1.1.1.1 \n - Any Intensity - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n SEVERE 38 (28.4%) 36 (26.9%) 36 (27.3%) \n LIFE THREATENING 0 1 (0.7%) 0 \ncl C.1 \n - Any Intensity - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n SEVERE 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Intensity - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n SEVERE 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadae <- df_explicit_na(adae) %>%\n var_relabel(\n AEBODSYS = \"MedDRA System Organ Class\",\n AEDECOD = \"MedDRA Preferred Term\"\n ) %>%\n filter(ANL01FL == \"Y\")\nadae <- adae %>% mutate(ASEV = as.character(AESEV))\nadae$ASEV[1:15] <- \"LIFE THREATENING\"\nadae <- adae %>% mutate(ASEV = factor(ASEV, levels = c(\"MILD\", \"MODERATE\", \"SEVERE\", \"LIFE THREATENING\")))", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodegrade_groups <- list(\"- Any Intensity -\" = c(\"MILD\", \"MODERATE\", \"SEVERE\", \"LIFE THREATENING\"))\n\nsplit_fun <- trim_levels_in_group\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ACTARM\") %>%\n count_occurrences_by_grade(\n var = \"ASEV\",\n grade_groups = grade_groups\n ) %>%\n split_rows_by(\n \"AEBODSYS\",\n child_labels = \"visible\",\n nested = TRUE,\n split_fun = split_fun(\"ASEV\"),\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEBODSYS)\n ) %>%\n summarize_occurrences_by_grade(\n var = \"ASEV\",\n grade_groups = grade_groups\n ) %>%\n split_rows_by(\n \"AEDECOD\",\n child_labels = \"visible\",\n nested = TRUE,\n indent_mod = -1L,\n split_fun = split_fun(\"ASEV\"),\n label_pos = \"topleft\",\n split_label = obj_label(adae$AEDECOD)\n ) %>%\n summarize_num_patients(\n var = \"USUBJID\",\n .stats = \"unique\",\n .labels = c(\"- Any Intensity -\")\n ) %>%\n count_occurrences_by_grade(\n var = \"ASEV\",\n .indent_mods = -1L\n ) %>%\n append_varlabels(adae, \"AESEV\", indent = 2L)\n\nresult <- lyt %>%\n build_table(\n adae,\n alt_counts_df = adsl\n ) %>%\n sort_at_path(\n path = \"AEBODSYS\",\n scorefun = cont_n_allcols,\n decreasing = TRUE\n ) %>%\n sort_at_path(\n path = c(\"AEBODSYS\", \"*\", \"AEDECOD\"),\n scorefun = cont_n_allcols,\n decreasing = TRUE\n )\n\nresult\n\nMedDRA System Organ Class \n MedDRA Preferred Term A: Drug X B: Placebo C: Combination\n Severity/Intensity (N=134) (N=134) (N=132) \n—————————————————————————————————————————————————————————————————————\n- Any Intensity - 100 (74.6%) 98 (73.1%) 103 (78.0%) \nMILD 5 (3.7%) 7 (5.2%) 4 (3.0%) \nMODERATE 17 (12.7%) 21 (15.7%) 20 (15.2%) \nSEVERE 77 (57.5%) 69 (51.5%) 77 (58.3%) \nLIFE THREATENING 1 (0.7%) 1 (0.7%) 2 (1.5%) \ncl A.1 \n - Any Intensity - 68 (50.7%) 58 (43.3%) 76 (57.6%) \n MILD 27 (20.1%) 19 (14.2%) 34 (25.8%) \n MODERATE 40 (29.9%) 39 (29.1%) 41 (31.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \n dcd A.1.1.1.1 \n - Any Intensity - 45 (33.6%) 31 (23.1%) 52 (39.4%) \n MILD 45 (33.6%) 31 (23.1%) 51 (38.6%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd A.1.1.1.2 \n - Any Intensity - 41 (30.6%) 39 (29.1%) 42 (31.8%) \n MODERATE 40 (29.9%) 39 (29.1%) 41 (31.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \ncl B.2 \n - Any Intensity - 62 (46.3%) 56 (41.8%) 74 (56.1%) \n MILD 23 (17.2%) 22 (16.4%) 28 (21.2%) \n MODERATE 38 (28.4%) 34 (25.4%) 45 (34.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \n dcd B.2.2.3.1 \n - Any Intensity - 38 (28.4%) 40 (29.9%) 45 (34.1%) \n MILD 38 (28.4%) 40 (29.9%) 45 (34.1%) \n dcd B.2.1.2.1 \n - Any Intensity - 39 (29.1%) 34 (25.4%) 46 (34.8%) \n MODERATE 38 (28.4%) 34 (25.4%) 45 (34.1%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \ncl D.1 \n - Any Intensity - 64 (47.8%) 54 (40.3%) 68 (51.5%) \n MODERATE 21 (15.7%) 22 (16.4%) 22 (16.7%) \n SEVERE 42 (31.3%) 32 (23.9%) 44 (33.3%) \n LIFE THREATENING 1 (0.7%) 0 2 (1.5%) \n dcd D.1.1.1.1 \n - Any Intensity - 42 (31.3%) 32 (23.9%) 46 (34.8%) \n SEVERE 42 (31.3%) 32 (23.9%) 45 (34.1%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd D.1.1.4.2 \n - Any Intensity - 38 (28.4%) 34 (25.4%) 40 (30.3%) \n MODERATE 37 (27.6%) 34 (25.4%) 39 (29.5%) \n LIFE THREATENING 1 (0.7%) 0 1 (0.8%) \ncl D.2 \n - Any Intensity - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n MILD 37 (27.6%) 46 (34.3%) 49 (37.1%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd D.2.1.5.3 \n - Any Intensity - 37 (27.6%) 46 (34.3%) 50 (37.9%) \n MILD 37 (27.6%) 46 (34.3%) 49 (37.1%) \n LIFE THREATENING 0 0 1 (0.8%) \ncl C.2 \n - Any Intensity - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n MODERATE 28 (20.9%) 36 (26.9%) 47 (35.6%) \n LIFE THREATENING 0 0 1 (0.8%) \n dcd C.2.1.2.1 \n - Any Intensity - 28 (20.9%) 36 (26.9%) 48 (36.4%) \n MODERATE 28 (20.9%) 36 (26.9%) 47 (35.6%) \n LIFE THREATENING 0 0 1 (0.8%) \ncl B.1 \n - Any Intensity - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n SEVERE 38 (28.4%) 36 (26.9%) 36 (27.3%) \n LIFE THREATENING 0 1 (0.7%) 0 \n dcd B.1.1.1.1 \n - Any Intensity - 38 (28.4%) 37 (27.6%) 36 (27.3%) \n SEVERE 38 (28.4%) 36 (26.9%) 36 (27.3%) \n LIFE THREATENING 0 1 (0.7%) 0 \ncl C.1 \n - Any Intensity - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n SEVERE 36 (26.9%) 34 (25.4%) 36 (27.3%) \n dcd C.1.1.1.3 \n - Any Intensity - 36 (26.9%) 34 (25.4%) 36 (27.3%) \n SEVERE 36 (26.9%) 34 (25.4%) 36 (27.3%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadae <- random.cdisc.data::cadae\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadae <- df_explicit_na(adae) %>%\n var_relabel(\n AEBODSYS = \"MedDRA System Organ Class\",\n AEDECOD = \"MedDRA Preferred Term\"\n ) %>%\n filter(ANL01FL == \"Y\")\nadae <- adae %>% mutate(ASEV = as.character(AESEV))\nadae$ASEV[1:15] <- \"LIFE THREATENING\"\nadae <- adae %>% mutate(ASEV = factor(ASEV, levels = c(\"MILD\", \"MODERATE\", \"SEVERE\", \"LIFE THREATENING\")))", "crumbs": [ "Tables", "Adverse Events", @@ -3576,7 +3576,7 @@ "href": "tables/adverse-events/aet03.html#reproducibility", "title": "AET03", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:06:32 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n chromote 0.3.1 2024-08-30 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n coda 0.19-4.1 2024-01-31 [1] CRAN (R 4.4.1)\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] 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2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1)\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n webshot 0.5.5 2023-06-26 [1] CRAN (R 4.4.1)\n webshot2 0.1.1 2023-08-11 [1] RSPM\n websocket 1.4.2 2024-07-22 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n xtable 1.8-4 2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:02:32 UTC\"\n\n\nSession Info\n\n\n─ Session info 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2019-04-21 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Disposition", @@ -3684,7 +3684,7 @@ "href": "tables/pharmacokinetic/pkpt05.html#output", "title": "PKPT05", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\nCode# lyt creation\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"ARMCD\",\n split_fun = trim_levels_in_group(\"ARMCD\"),\n label_pos = \"topleft\",\n split_label = \"Treatment Arm\"\n ) %>%\n split_rows_by(\n var = \"PKPARAM\",\n label_pos = \"topleft\",\n split_label = \"PK Parameter\",\n child_labels = \"hidden\"\n ) %>%\n analyze_vars_in_cols(\n vars = \"AVAL\",\n .stats = c(\n \"n\", \"mean\", \"sd\", \"cv\",\n \"geom_mean\", \"geom_cv\", \"median\",\n \"min\", \"max\"\n ),\n .labels = c(\n n = \"n\",\n mean = \"Mean\",\n sd = \"SD\",\n cv = \"CV (%)\",\n geom_mean = \"Geometric Mean\",\n geom_cv = \"CV % Geometric Mean\",\n median = \"Median\",\n min = \"Minimum\",\n max = \"Maximum\"\n ),\n .formats = c(\n n = \"xx.\",\n mean = format_sigfig(3),\n sd = format_sigfig(3),\n cv = \"xx.x\",\n median = format_sigfig(3),\n geom_mean = format_sigfig(3),\n geom_cv = \"xx.x\",\n min = format_sigfig(3),\n max = format_sigfig(3)\n )\n )\n\n\nPlasma Drug X\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp0 <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp0)\nmain_title(result) <- paste(\"Summary of\", unique(adpp0$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp0$PPCAT), \"\\nVisit:\", unique(adpp0$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X \nVisit: CYCLE 1 DAY 1\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A \n Ae (mg) 268 1.55 0.338 21.8 1.51 23.0 1.55 0.702 2.46 \n Fe (%) 268 15.7 3.35 21.3 15.3 22.2 15.8 8.15 24.5 \n CLR (L/hr) 134 0.0492 0.00961 19.5 0.0482 21.0 0.0491 0.0249 0.0751 \n RENALCLD (L/hr/mg) 134 0.00487 0.000965 19.8 0.00477 21.2 0.00497 0.00238 0.00726\nARM C \n Ae (mg) 264 1.54 0.298 19.4 1.51 20.3 1.55 0.850 2.21 \n Fe (%) 264 16.1 3.10 19.3 15.8 20.2 16.0 8.50 24.4 \n CLR (L/hr) 132 0.0502 0.0105 20.9 0.0491 21.9 0.0498 0.0251 0.0856 \n RENALCLD (L/hr/mg) 132 0.00511 0.000934 18.3 0.00502 19.7 0.00515 0.00236 0.00741\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug Y\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp1 <- adpp %>%\n filter(PPCAT == \"Plasma Drug Y\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp1)\nmain_title(result) <- paste(\"Summary of\", unique(adpp1$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp1$PPCAT), \"\\nVisit:\", unique(adpp1$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y \nVisit: CYCLE 1 DAY 1\n\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C \n Ae (mg) 264 1.60 0.315 19.7 1.56 21.4 1.60 0.857 2.26 \n Fe (%) 264 15.8 3.08 19.4 15.5 20.2 15.7 8.31 23.8 \n CLR (L/hr) 132 0.0497 0.0101 20.3 0.0486 22.0 0.0491 0.0184 0.0776 \n RENALCLD (L/hr/mg) 132 0.00509 0.00103 20.3 0.00499 21.4 0.00502 0.00236 0.00794\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadpp <- random.cdisc.data::cadpp\nadpp <- adpp %>% filter(PPSPEC == \"Urine\", AVISIT == \"CYCLE 1 DAY 1\")", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\nCode# lyt creation\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"ARMCD\",\n split_fun = trim_levels_in_group(\"ARMCD\"),\n label_pos = \"topleft\",\n split_label = \"Treatment Arm\"\n ) %>%\n split_rows_by(\n var = \"PKPARAM\",\n label_pos = \"topleft\",\n split_label = \"PK Parameter\",\n child_labels = \"hidden\"\n ) %>%\n analyze_vars_in_cols(\n vars = \"AVAL\",\n .stats = c(\n \"n\", \"mean\", \"sd\", \"cv\",\n \"geom_mean\", \"geom_cv\", \"median\",\n \"min\", \"max\"\n ),\n .labels = c(\n n = \"n\",\n mean = \"Mean\",\n sd = \"SD\",\n cv = \"CV (%)\",\n geom_mean = \"Geometric Mean\",\n geom_cv = \"CV % Geometric Mean\",\n median = \"Median\",\n min = \"Minimum\",\n max = \"Maximum\"\n ),\n .formats = c(\n n = \"xx.\",\n mean = format_sigfig(3),\n sd = format_sigfig(3),\n cv = \"xx.x\",\n median = format_sigfig(3),\n geom_mean = format_sigfig(3),\n geom_cv = \"xx.x\",\n min = format_sigfig(3),\n max = format_sigfig(3)\n )\n )\n\n\nPlasma Drug X\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp0 <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp0)\nmain_title(result) <- paste(\"Summary of\", unique(adpp0$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp0$PPCAT), \"\\nVisit:\", unique(adpp0$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X \nVisit: CYCLE 1 DAY 1\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A \n Ae (mg) 268 1.55 0.338 21.8 1.51 23.0 1.55 0.702 2.46 \n Fe (%) 268 15.7 3.35 21.3 15.3 22.2 15.8 8.15 24.5 \n CLR (L/hr) 134 0.0492 0.00961 19.5 0.0482 21.0 0.0491 0.0249 0.0751 \n RENALCLD (L/hr/mg) 134 0.00487 0.000965 19.8 0.00477 21.2 0.00497 0.00238 0.00726\nARM C \n Ae (mg) 264 1.54 0.298 19.4 1.51 20.3 1.55 0.850 2.21 \n Fe (%) 264 16.1 3.10 19.3 15.8 20.2 16.0 8.50 24.4 \n CLR (L/hr) 132 0.0502 0.0105 20.9 0.0491 21.9 0.0498 0.0251 0.0856 \n RENALCLD (L/hr/mg) 132 0.00511 0.000934 18.3 0.00502 19.7 0.00515 0.00236 0.00741\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug Y\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodeadpp1 <- adpp %>%\n filter(PPCAT == \"Plasma Drug Y\") %>%\n h_pkparam_sort() %>%\n mutate(PKPARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PKPARAM = reorder(PKPARAM, TLG_ORDER))\n\nresult <- build_table(lyt, df = adpp1)\nmain_title(result) <- paste(\"Summary of\", unique(adpp1$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp1$PPCAT), \"\\nVisit:\", unique(adpp1$AVISIT))\nresult\n\nSummary of Urine PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y \nVisit: CYCLE 1 DAY 1\n\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C \n Ae (mg) 264 1.60 0.315 19.7 1.56 21.4 1.60 0.857 2.26 \n Fe (%) 264 15.8 3.08 19.4 15.5 20.2 15.7 8.31 23.8 \n CLR (L/hr) 132 0.0497 0.0101 20.3 0.0486 22.0 0.0491 0.0184 0.0776 \n RENALCLD (L/hr/mg) 132 0.00509 0.00103 20.3 0.00499 21.4 0.00502 0.00236 0.00794\n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\nadpp <- random.cdisc.data::cadpp\nadpp <- adpp %>% filter(PPSPEC == \"Urine\", AVISIT == \"CYCLE 1 DAY 1\")", "crumbs": [ "Tables", "Pharmacokinetic", @@ -3696,7 +3696,7 @@ "href": "tables/pharmacokinetic/pkpt05.html#reproducibility", "title": "PKPT05", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:08:44 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:04:43 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Pharmacokinetic", @@ -3720,7 +3720,7 @@ "href": "tables/pharmacokinetic/pkpt06.html#reproducibility", "title": "PKPT06", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:08:58 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr * 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:04:56 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr * 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Pharmacokinetic", @@ -3744,7 +3744,7 @@ "href": "tables/pharmacokinetic/pkpt04.html#reproducibility", "title": "PKPT04", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:09:12 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:05:10 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Pharmacokinetic", @@ -3756,7 +3756,7 @@ "href": "tables/pharmacokinetic/pkpt03.html#output", "title": "PKPT03", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\nCode# lyt creation\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"AVISIT\",\n split_fun = drop_split_levels,\n split_label = \"Visit\",\n page_by = TRUE\n ) %>%\n split_rows_by(\n var = \"ARMCD\",\n split_fun = trim_levels_in_group(\"PARAM\"),\n label_pos = \"topleft\",\n split_label = \"Treatment Arm\"\n ) %>%\n add_rowcounts(alt_counts = TRUE) %>%\n split_rows_by(\n var = \"PARAM\",\n label_pos = \"topleft\",\n split_label = \"PK Parameter\",\n child_labels = \"hidden\"\n ) %>%\n analyze_vars_in_cols(\n vars = \"AVAL\",\n .stats = c(\n \"n\", \"mean\", \"sd\", \"cv\",\n \"geom_mean\", \"geom_cv\", \"median\",\n \"min\", \"max\"\n ),\n .labels = c(\n n = \"n\",\n mean = \"Mean\",\n sd = \"SD\",\n cv = \"CV (%)\",\n geom_mean = \"Geometric Mean\",\n geom_cv = \"CV % Geometric Mean\",\n median = \"Median\",\n min = \"Minimum\",\n max = \"Maximum\"\n ),\n .formats = c(\n n = \"xx.\",\n mean = format_sigfig(3),\n sd = format_sigfig(3),\n cv = \"xx.x\",\n median = format_sigfig(3),\n geom_mean = format_sigfig(3),\n geom_cv = \"xx.x\",\n min = format_sigfig(3),\n max = format_sigfig(3)\n ),\n na_str = \"NE\"\n )\n\n\nPlasma Drug X\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, df = adpp_x, alt_counts_df = adsl_x_splitvars)\nmain_title(result) <- paste(\"Summary of\", unique(adpp_x$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp_x$PPCAT))\nresult <- paginate_table(result, landscape = TRUE)\nresult\n\n$`CYCLE 1 DAY 1`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 1\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n Cmax (ug/mL) 0 NE NE NE NE NE NE NE NE \n AUCinf obs (day*ug/mL) 134 203 37.7 18.6 199 18.7 197 125 311 \n CL obs (ml/day/kg) 134 5.04 1.04 20.6 4.93 22.4 5.08 2.25 7.39 \nARM C (N=132) \n Cmax (ug/mL) 132 30.0 5.46 18.2 29.5 18.9 29.8 15.9 47.6 \n AUCinf obs (day*ug/mL) 132 195 37.8 19.4 192 20.1 196 103 315 \n CL obs (ml/day/kg) 132 5.01 0.985 19.7 4.91 21.1 4.97 2.10 7.49 \n\n$`CYCLE 1 DAY 2`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 2\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n Cmax (ug/mL) 134 29.4 6.22 21.2 28.6 24.4 29.8 10.1 43.5 \n AUCinf obs (day*ug/mL) 134 202 41.2 20.4 197 21.4 200 105 294 \n CL obs (ml/day/kg) 134 5.04 1.04 20.7 4.92 22.6 5.01 2.39 7.18 \nARM C (N=132) \n Cmax (ug/mL) 132 30.4 6.03 19.9 29.7 21.7 30.5 12.4 45.5 \n AUCinf obs (day*ug/mL) 132 191 43.0 22.5 186 24.7 189 74.8 296 \n CL obs (ml/day/kg) 132 5.07 1.07 21.1 4.96 22.4 5.01 2.48 7.50 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug X: Remove Rows with 0s\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, df = adpp_x, alt_counts_df = adsl_x_splitvars) %>%\n prune_table()\n\nmain_title(result) <- paste(\"Summary of\", unique(adpp_x$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp_x$PPCAT))\nresult <- paginate_table(result, landscape = TRUE)\nresult\n\n$`CYCLE 1 DAY 1`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 1\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n AUCinf obs (day*ug/mL) 134 203 37.7 18.6 199 18.7 197 125 311 \n CL obs (ml/day/kg) 134 5.04 1.04 20.6 4.93 22.4 5.08 2.25 7.39 \nARM C (N=132) \n Cmax (ug/mL) 132 30.0 5.46 18.2 29.5 18.9 29.8 15.9 47.6 \n AUCinf obs (day*ug/mL) 132 195 37.8 19.4 192 20.1 196 103 315 \n CL obs (ml/day/kg) 132 5.01 0.985 19.7 4.91 21.1 4.97 2.10 7.49 \n\n$`CYCLE 1 DAY 2`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 2\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n Cmax (ug/mL) 134 29.4 6.22 21.2 28.6 24.4 29.8 10.1 43.5 \n AUCinf obs (day*ug/mL) 134 202 41.2 20.4 197 21.4 200 105 294 \n CL obs (ml/day/kg) 134 5.04 1.04 20.7 4.92 22.6 5.01 2.39 7.18 \nARM C (N=132) \n Cmax (ug/mL) 132 30.4 6.03 19.9 29.7 21.7 30.5 12.4 45.5 \n AUCinf obs (day*ug/mL) 132 191 43.0 22.5 186 24.7 189 74.8 296 \n CL obs (ml/day/kg) 132 5.07 1.07 21.1 4.96 22.4 5.01 2.48 7.50 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug Y\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, df = adpp_y, alt_counts_df = adsl_y_splitvars)\nmain_title(result) <- paste(\"Summary of\", unique(adpp_y$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp_y$PPCAT))\nresult <- paginate_table(result, landscape = TRUE)\nresult\n\n$`CYCLE 1 DAY 1`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y\nVisit: CYCLE 1 DAY 1\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C (N=132) \n Cmax (ug/mL) 132 29.9 5.55 18.6 29.4 20.1 29.7 14.1 43.4 \n AUCinf obs (day*ug/mL) 132 199 37.9 19.1 195 18.9 195 126 318 \n CL obs (ml/day/kg) 132 4.96 0.895 18.1 4.87 18.7 4.94 2.99 7.21 \n\n$`CYCLE 1 DAY 2`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y\nVisit: CYCLE 1 DAY 2\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\n \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C (N=132) \n Cmax (ug/mL) 132 30.7 6.12 19.9 30.1 21.9 31.4 12.9 48.3 \n AUCinf obs (day*ug/mL) 132 199 40.0 20.1 194 22.2 197 79.2 295 \n CL obs (ml/day/kg) 132 4.99 0.984 19.7 4.89 20.9 4.96 2.58 8.39 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\n# Preprocess analysis data ----\nadpp <- random.cdisc.data::cadpp\nadpp <- adpp %>%\n filter(PPSPEC == \"Plasma\") %>%\n filter(AVISIT %in% c(\"CYCLE 1 DAY 1\", \"CYCLE 1 DAY 2\")) %>%\n h_pkparam_sort() %>%\n mutate(PARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PARAM = reorder(PARAM, TLG_ORDER))\n\n# Preprocess subject-level data ----\nadsl <- random.cdisc.data::cadsl\n\n# Workaround needed to include (N=xx) population counts\n# Repeat ADSL by the number of levels in AVISIT\n# Include AVISIT and dummy PARAM as it's needed for trim_levels_in_group\nadsl_tmp <- adsl %>%\n select(STUDYID, USUBJID, ARMCD) %>%\n unique() %>%\n mutate(PARAM = factor(NA_character_, levels = levels(adpp$PARAM)))\n\n# Data for Plasma Drug X example ----\nadpp_x <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n # Please do not replicate mutate statement below!\n # It is used to make the random data in this example more realistic\n # as not all parameters are always available across all visits.\n mutate(\n AVAL = if_else(\n ARMCD == \"ARM A\" & AVISIT == \"CYCLE 1 DAY 1\" & PARAM == \"Cmax (ug/mL)\",\n NA_real_, AVAL\n )\n )\n\nadpp_x_tmp <- adpp_x %>%\n select(STUDYID, USUBJID, ARMCD, AVISIT) %>%\n unique()\n\nadsl_x_splitvars <- adsl_tmp %>%\n left_join(adpp_x_tmp, by = c(\"STUDYID\", \"USUBJID\", \"ARMCD\")) %>%\n filter(!is.na(AVISIT))\n\n# Data for Plasma Drug Y example ----\nadpp_y <- adpp %>%\n filter(PPCAT == \"Plasma Drug Y\")\n\nadpp_y_tmp <- adpp_y %>%\n select(STUDYID, USUBJID, ARMCD, AVISIT) %>%\n unique()\n\nadsl_y_splitvars <- adsl_tmp %>%\n left_join(adpp_y_tmp, by = c(\"STUDYID\", \"USUBJID\", \"ARMCD\")) %>%\n filter(!is.na(AVISIT))", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\nCode# lyt creation\nlyt <- basic_table() %>%\n split_rows_by(\n var = \"AVISIT\",\n split_fun = drop_split_levels,\n split_label = \"Visit\",\n page_by = TRUE\n ) %>%\n split_rows_by(\n var = \"ARMCD\",\n split_fun = trim_levels_in_group(\"PARAM\"),\n label_pos = \"topleft\",\n split_label = \"Treatment Arm\"\n ) %>%\n add_rowcounts(alt_counts = TRUE) %>%\n split_rows_by(\n var = \"PARAM\",\n label_pos = \"topleft\",\n split_label = \"PK Parameter\",\n child_labels = \"hidden\"\n ) %>%\n analyze_vars_in_cols(\n vars = \"AVAL\",\n .stats = c(\n \"n\", \"mean\", \"sd\", \"cv\",\n \"geom_mean\", \"geom_cv\", \"median\",\n \"min\", \"max\"\n ),\n .labels = c(\n n = \"n\",\n mean = \"Mean\",\n sd = \"SD\",\n cv = \"CV (%)\",\n geom_mean = \"Geometric Mean\",\n geom_cv = \"CV % Geometric Mean\",\n median = \"Median\",\n min = \"Minimum\",\n max = \"Maximum\"\n ),\n .formats = c(\n n = \"xx.\",\n mean = format_sigfig(3),\n sd = format_sigfig(3),\n cv = \"xx.x\",\n median = format_sigfig(3),\n geom_mean = format_sigfig(3),\n geom_cv = \"xx.x\",\n min = format_sigfig(3),\n max = format_sigfig(3)\n ),\n na_str = \"NE\"\n )\n\n\nPlasma Drug X\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, df = adpp_x, alt_counts_df = adsl_x_splitvars)\nmain_title(result) <- paste(\"Summary of\", unique(adpp_x$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp_x$PPCAT))\nresult <- paginate_table(result, landscape = TRUE)\nresult\n\n$`CYCLE 1 DAY 1`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 1\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n Cmax (ug/mL) 0 NE NE NE NE NE NE NE NE \n AUCinf obs (day*ug/mL) 134 203 37.7 18.6 199 18.7 197 125 311 \n CL obs (ml/day/kg) 134 5.04 1.04 20.6 4.93 22.4 5.08 2.25 7.39 \nARM C (N=132) \n Cmax (ug/mL) 132 30.0 5.46 18.2 29.5 18.9 29.8 15.9 47.6 \n AUCinf obs (day*ug/mL) 132 195 37.8 19.4 192 20.1 196 103 315 \n CL obs (ml/day/kg) 132 5.01 0.985 19.7 4.91 21.1 4.97 2.10 7.49 \n\n$`CYCLE 1 DAY 2`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 2\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n Cmax (ug/mL) 134 29.4 6.22 21.2 28.6 24.4 29.8 10.1 43.5 \n AUCinf obs (day*ug/mL) 134 202 41.2 20.4 197 21.4 200 105 294 \n CL obs (ml/day/kg) 134 5.04 1.04 20.7 4.92 22.6 5.01 2.39 7.18 \nARM C (N=132) \n Cmax (ug/mL) 132 30.4 6.03 19.9 29.7 21.7 30.5 12.4 45.5 \n AUCinf obs (day*ug/mL) 132 191 43.0 22.5 186 24.7 189 74.8 296 \n CL obs (ml/day/kg) 132 5.07 1.07 21.1 4.96 22.4 5.01 2.48 7.50 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug X: Remove Rows with 0s\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, df = adpp_x, alt_counts_df = adsl_x_splitvars) %>%\n prune_table()\n\nmain_title(result) <- paste(\"Summary of\", unique(adpp_x$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp_x$PPCAT))\nresult <- paginate_table(result, landscape = TRUE)\nresult\n\n$`CYCLE 1 DAY 1`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 1\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n AUCinf obs (day*ug/mL) 134 203 37.7 18.6 199 18.7 197 125 311 \n CL obs (ml/day/kg) 134 5.04 1.04 20.6 4.93 22.4 5.08 2.25 7.39 \nARM C (N=132) \n Cmax (ug/mL) 132 30.0 5.46 18.2 29.5 18.9 29.8 15.9 47.6 \n AUCinf obs (day*ug/mL) 132 195 37.8 19.4 192 20.1 196 103 315 \n CL obs (ml/day/kg) 132 5.01 0.985 19.7 4.91 21.1 4.97 2.10 7.49 \n\n$`CYCLE 1 DAY 2`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug X\nVisit: CYCLE 1 DAY 2\n\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM A (N=134) \n Cmax (ug/mL) 134 29.4 6.22 21.2 28.6 24.4 29.8 10.1 43.5 \n AUCinf obs (day*ug/mL) 134 202 41.2 20.4 197 21.4 200 105 294 \n CL obs (ml/day/kg) 134 5.04 1.04 20.7 4.92 22.6 5.01 2.39 7.18 \nARM C (N=132) \n Cmax (ug/mL) 132 30.4 6.03 19.9 29.7 21.7 30.5 12.4 45.5 \n AUCinf obs (day*ug/mL) 132 191 43.0 22.5 186 24.7 189 74.8 296 \n CL obs (ml/day/kg) 132 5.07 1.07 21.1 4.96 22.4 5.01 2.48 7.50 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\nPlasma Drug Y\n\n\n Preview\n Try this using WebR\n\n\n\n\nCoderesult <- build_table(lyt, df = adpp_y, alt_counts_df = adsl_y_splitvars)\nmain_title(result) <- paste(\"Summary of\", unique(adpp_y$PPSPEC), \"PK Parameter by Treatment Arm, PK Population\")\nsubtitles(result) <- paste(\"Analyte:\", unique(adpp_y$PPCAT))\nresult <- paginate_table(result, landscape = TRUE)\nresult\n\n$`CYCLE 1 DAY 1`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y\nVisit: CYCLE 1 DAY 1\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C (N=132) \n Cmax (ug/mL) 132 29.9 5.55 18.6 29.4 20.1 29.7 14.1 43.4 \n AUCinf obs (day*ug/mL) 132 199 37.9 19.1 195 18.9 195 126 318 \n CL obs (ml/day/kg) 132 4.96 0.895 18.1 4.87 18.7 4.94 2.99 7.21 \n\n$`CYCLE 1 DAY 2`\n\n\nSummary of Plasma PK Parameter by Treatment Arm, PK Population\nAnalyte: Plasma Drug Y\nVisit: CYCLE 1 DAY 2\n\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nTreatment Arm \n PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum\n——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————\nARM C (N=132) \n Cmax (ug/mL) 132 30.7 6.12 19.9 30.1 21.9 31.4 12.9 48.3 \n AUCinf obs (day*ug/mL) 132 199 40.0 20.1 194 22.2 197 79.2 295 \n CL obs (ml/day/kg) 132 4.99 0.984 19.7 4.89 20.9 4.96 2.58 8.39 \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(dplyr)\nlibrary(tern)\n\n# Preprocess analysis data ----\nadpp <- random.cdisc.data::cadpp\nadpp <- adpp %>%\n filter(PPSPEC == \"Plasma\") %>%\n filter(AVISIT %in% c(\"CYCLE 1 DAY 1\", \"CYCLE 1 DAY 2\")) %>%\n h_pkparam_sort() %>%\n mutate(PARAM = factor(paste0(TLG_DISPLAY, \" (\", AVALU, \")\"))) %>%\n mutate(PARAM = reorder(PARAM, TLG_ORDER))\n\n# Preprocess subject-level data ----\nadsl <- random.cdisc.data::cadsl\n\n# Workaround needed to include (N=xx) population counts\n# Repeat ADSL by the number of levels in AVISIT\n# Include AVISIT and dummy PARAM as it's needed for trim_levels_in_group\nadsl_tmp <- adsl %>%\n select(STUDYID, USUBJID, ARMCD) %>%\n unique() %>%\n mutate(PARAM = factor(NA_character_, levels = levels(adpp$PARAM)))\n\n# Data for Plasma Drug X example ----\nadpp_x <- adpp %>%\n filter(PPCAT == \"Plasma Drug X\") %>%\n # Please do not replicate mutate statement below!\n # It is used to make the random data in this example more realistic\n # as not all parameters are always available across all visits.\n mutate(\n AVAL = if_else(\n ARMCD == \"ARM A\" & AVISIT == \"CYCLE 1 DAY 1\" & PARAM == \"Cmax (ug/mL)\",\n NA_real_, AVAL\n )\n )\n\nadpp_x_tmp <- adpp_x %>%\n select(STUDYID, USUBJID, ARMCD, AVISIT) %>%\n unique()\n\nadsl_x_splitvars <- adsl_tmp %>%\n left_join(adpp_x_tmp, by = c(\"STUDYID\", \"USUBJID\", \"ARMCD\")) %>%\n filter(!is.na(AVISIT))\n\n# Data for Plasma Drug Y example ----\nadpp_y <- adpp %>%\n filter(PPCAT == \"Plasma Drug Y\")\n\nadpp_y_tmp <- adpp_y %>%\n select(STUDYID, USUBJID, ARMCD, AVISIT) %>%\n unique()\n\nadsl_y_splitvars <- adsl_tmp %>%\n left_join(adpp_y_tmp, by = c(\"STUDYID\", \"USUBJID\", \"ARMCD\")) %>%\n filter(!is.na(AVISIT))", "crumbs": [ "Tables", "Pharmacokinetic", @@ -3768,7 +3768,7 @@ "href": "tables/pharmacokinetic/pkpt03.html#reproducibility", "title": "PKPT03", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:09:34 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9007 2024-11-27 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:05:32 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-30 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rbibutils 2.3 2024-10-04 [1] RSPM\n Rdpack 2.6.2 2024-11-15 [1] RSPM\n rlang 1.1.4 2024-06-04 [1] RSPM\n rmarkdown 2.29 2024-11-04 [1] RSPM\n rtables * 0.6.10.9008 2024-11-30 [1] https://p~\n scales 1.3.0 2023-11-28 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1)\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n tern * 0.9.6.9016 2024-11-30 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "Pharmacokinetic", @@ -3792,7 +3792,7 @@ "href": "tables/ADA/adat02.html#reproducibility", "title": "ADAT02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:09:47 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n colorspace 2.1-1 2024-07-26 [1] RSPM\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n forcats 1.0.0 2023-01-29 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n ggplot2 3.5.1 2024-04-23 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n gtable 0.3.6 2024-10-25 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1)\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr * 2.0.3 2022-03-30 [1] RSPM\n Matrix 1.7-1 2024-10-18 [1] RSPM\n munsell 0.5.1 2024-04-01 [1] RSPM\n nestcolor 0.1.2.9017 2024-11-27 [1] https://p~\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 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2024-11-27 [1] https://p~\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:05:59 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n 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it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "ADA", @@ -3876,7 +3876,7 @@ "href": "tables/ECG/egt03.html#reproducibility", "title": "EGT03", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:10:56 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n broom 1.0.7 2024-09-26 [1] RSPM\n bslib 0.8.0 2024-07-29 [1] RSPM\n cachem 1.1.0 2024-05-16 [1] RSPM\n callr 3.7.6 2024-03-25 [1] RSPM\n checkmate 2.3.2 2024-07-29 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/usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "ECG", @@ -3888,7 +3888,7 @@ "href": "tables/ECG/egt05_qtcat.html#output", "title": "EGT05_QTCAT", "section": "Output", - "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_label = obj_label(adeg_f$PARAM),\n split_fun = split_fun,\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_label = obj_label(adeg_f$AVISIT),\n split_fun = split_fun,\n label_pos = \"topleft\"\n ) %>%\n analyze_vars(\n vars = c(\"AVALCAT1\", \"CHGCAT1\"),\n var_labels = c(\"Value at Visit\", \"Change from Baseline\")\n ) %>%\n append_topleft(\" Category\")\n\nresult <- build_table(lyt = lyt, df = adeg_f, alt_counts_df = adsl) %>%\n prune_table()\n\nresult\n\n \n Analysis Visit A: Drug X B: Placebo C: Combination\n Category (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————\nQT Duration \n BASELINE \n Value at Visit \n n 134 134 132 \n <=450 msec 115 (85.8%) 117 (87.3%) 104 (78.8%) \n >450 to <=480 msec 6 (4.5%) 10 (7.5%) 9 (6.8%) \n >480 to <= 500 msec 4 (3%) 3 (2.2%) 6 (4.5%) \n >500 msec 9 (6.7%) 4 (3%) 13 (9.8%) \n WEEK 1 DAY 8 \n Value at Visit \n n 134 134 132 \n <=450 msec 113 (84.3%) 106 (79.1%) 106 (80.3%) \n >450 to <=480 msec 10 (7.5%) 10 (7.5%) 11 (8.3%) \n >480 to <= 500 msec 4 (3%) 4 (3%) 3 (2.3%) \n >500 msec 7 (5.2%) 14 (10.4%) 12 (9.1%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 76 (56.7%) 75 (56%) 75 (56.8%) \n >30 to <=60 msec 7 (5.2%) 13 (9.7%) 11 (8.3%) \n >60 msec 51 (38.1%) 46 (34.3%) 46 (34.8%) \n WEEK 2 DAY 15 \n Value at Visit \n n 134 134 132 \n <=450 msec 111 (82.8%) 114 (85.1%) 112 (84.8%) \n >450 to <=480 msec 10 (7.5%) 9 (6.7%) 9 (6.8%) \n >480 to <= 500 msec 7 (5.2%) 2 (1.5%) 5 (3.8%) \n >500 msec 6 (4.5%) 9 (6.7%) 6 (4.5%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 71 (53%) 87 (64.9%) 89 (67.4%) \n >30 to <=60 msec 11 (8.2%) 9 (6.7%) 9 (6.8%) \n >60 msec 52 (38.8%) 38 (28.4%) 34 (25.8%) \n WEEK 3 DAY 22 \n Value at Visit \n n 134 134 132 \n <=450 msec 106 (79.1%) 112 (83.6%) 118 (89.4%) \n >450 to <=480 msec 13 (9.7%) 7 (5.2%) 3 (2.3%) \n >480 to <= 500 msec 4 (3%) 5 (3.7%) 2 (1.5%) \n >500 msec 11 (8.2%) 10 (7.5%) 9 (6.8%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 63 (47%) 80 (59.7%) 81 (61.4%) \n >30 to <=60 msec 14 (10.4%) 8 (6%) 11 (8.3%) \n >60 msec 57 (42.5%) 46 (34.3%) 40 (30.3%) \n WEEK 4 DAY 29 \n Value at Visit \n n 134 134 132 \n <=450 msec 117 (87.3%) 103 (76.9%) 114 (86.4%) \n >450 to <=480 msec 7 (5.2%) 14 (10.4%) 6 (4.5%) \n >480 to <= 500 msec 4 (3%) 7 (5.2%) 3 (2.3%) \n >500 msec 6 (4.5%) 10 (7.5%) 9 (6.8%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 79 (59%) 80 (59.7%) 79 (59.8%) \n >30 to <=60 msec 11 (8.2%) 7 (5.2%) 10 (7.6%) \n >60 msec 44 (32.8%) 47 (35.1%) 43 (32.6%) \n WEEK 5 DAY 36 \n Value at Visit \n n 134 134 132 \n <=450 msec 107 (79.9%) 117 (87.3%) 112 (84.8%) \n >450 to <=480 msec 16 (11.9%) 5 (3.7%) 13 (9.8%) \n >480 to <= 500 msec 5 (3.7%) 9 (6.7%) 3 (2.3%) \n >500 msec 6 (4.5%) 3 (2.2%) 4 (3%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 72 (53.7%) 82 (61.2%) 73 (55.3%) \n >30 to <=60 msec 10 (7.5%) 11 (8.2%) 11 (8.3%) \n >60 msec 52 (38.8%) 41 (30.6%) 48 (36.4%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadeg <- random.cdisc.data::cadeg\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadeg <- df_explicit_na(adeg)\n\nadeg_labels <- var_labels(adeg)\nadeg_f <- adeg %>%\n filter(\n PARAMCD == \"QT\",\n ANL01FL == \"Y\"\n ) %>%\n mutate(\n AVALCAT1 = case_when(\n AVAL <= 450 ~ \"<=450 msec\",\n AVAL <= 480 ~ \">450 to <=480 msec\",\n AVAL <= 500 ~ \">480 to <= 500 msec\",\n AVAL > 500 ~ \">500 msec\",\n is.na(AVAL) ~ \"<Missing>\"\n ),\n CHGCAT1 = case_when(\n CHG <= 30 ~ \"<=30 msec\",\n CHG <= 60 ~ \">30 to <=60 msec\",\n CHG > 60 ~ \">60 msec\",\n is.na(CHG) ~ \"<Missing>\"\n )\n ) %>%\n mutate(\n AVALCAT1 = factor(\n AVALCAT1,\n levels = c(\n \"<=450 msec\",\n \">450 to <=480 msec\",\n \">480 to <= 500 msec\",\n \">500 msec\",\n \"<Missing>\"\n )\n ),\n CHGCAT1 = factor(\n CHGCAT1,\n levels = c(\n \"<=30 msec\",\n \">30 to <=60 msec\",\n \">60 msec\",\n \"<Missing>\"\n )\n )\n ) %>%\n var_relabel(\n AVALCAT1 = \"Value at Visit\",\n CHGCAT1 = \"Change from Baseline\"\n )", + "text": "Output\n\n\nStandard Table\nData Setup\n\n\n\n\n\n Preview\n Try this using WebR\n\n\n\n\nCodesplit_fun <- drop_split_levels\n\nlyt <- basic_table(show_colcounts = TRUE) %>%\n split_cols_by(\"ARM\") %>%\n split_rows_by(\n \"PARAM\",\n split_label = obj_label(adeg_f$PARAM),\n split_fun = split_fun,\n label_pos = \"topleft\"\n ) %>%\n split_rows_by(\n \"AVISIT\",\n split_label = obj_label(adeg_f$AVISIT),\n split_fun = split_fun,\n label_pos = \"topleft\"\n ) %>%\n analyze_vars(\n vars = c(\"AVALCAT1\", \"CHGCAT1\"),\n var_labels = c(\"Value at Visit\", \"Change from Baseline\")\n ) %>%\n append_topleft(\" Category\")\n\nresult <- build_table(lyt = lyt, df = adeg_f, alt_counts_df = adsl) %>%\n prune_table()\n\nresult\n\nParameter \n Analysis Visit A: Drug X B: Placebo C: Combination\n Category (N=134) (N=134) (N=132) \n——————————————————————————————————————————————————————————————————————\nQT Duration \n BASELINE \n Value at Visit \n n 134 134 132 \n <=450 msec 115 (85.8%) 117 (87.3%) 104 (78.8%) \n >450 to <=480 msec 6 (4.5%) 10 (7.5%) 9 (6.8%) \n >480 to <= 500 msec 4 (3%) 3 (2.2%) 6 (4.5%) \n >500 msec 9 (6.7%) 4 (3%) 13 (9.8%) \n WEEK 1 DAY 8 \n Value at Visit \n n 134 134 132 \n <=450 msec 113 (84.3%) 106 (79.1%) 106 (80.3%) \n >450 to <=480 msec 10 (7.5%) 10 (7.5%) 11 (8.3%) \n >480 to <= 500 msec 4 (3%) 4 (3%) 3 (2.3%) \n >500 msec 7 (5.2%) 14 (10.4%) 12 (9.1%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 76 (56.7%) 75 (56%) 75 (56.8%) \n >30 to <=60 msec 7 (5.2%) 13 (9.7%) 11 (8.3%) \n >60 msec 51 (38.1%) 46 (34.3%) 46 (34.8%) \n WEEK 2 DAY 15 \n Value at Visit \n n 134 134 132 \n <=450 msec 111 (82.8%) 114 (85.1%) 112 (84.8%) \n >450 to <=480 msec 10 (7.5%) 9 (6.7%) 9 (6.8%) \n >480 to <= 500 msec 7 (5.2%) 2 (1.5%) 5 (3.8%) \n >500 msec 6 (4.5%) 9 (6.7%) 6 (4.5%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 71 (53%) 87 (64.9%) 89 (67.4%) \n >30 to <=60 msec 11 (8.2%) 9 (6.7%) 9 (6.8%) \n >60 msec 52 (38.8%) 38 (28.4%) 34 (25.8%) \n WEEK 3 DAY 22 \n Value at Visit \n n 134 134 132 \n <=450 msec 106 (79.1%) 112 (83.6%) 118 (89.4%) \n >450 to <=480 msec 13 (9.7%) 7 (5.2%) 3 (2.3%) \n >480 to <= 500 msec 4 (3%) 5 (3.7%) 2 (1.5%) \n >500 msec 11 (8.2%) 10 (7.5%) 9 (6.8%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 63 (47%) 80 (59.7%) 81 (61.4%) \n >30 to <=60 msec 14 (10.4%) 8 (6%) 11 (8.3%) \n >60 msec 57 (42.5%) 46 (34.3%) 40 (30.3%) \n WEEK 4 DAY 29 \n Value at Visit \n n 134 134 132 \n <=450 msec 117 (87.3%) 103 (76.9%) 114 (86.4%) \n >450 to <=480 msec 7 (5.2%) 14 (10.4%) 6 (4.5%) \n >480 to <= 500 msec 4 (3%) 7 (5.2%) 3 (2.3%) \n >500 msec 6 (4.5%) 10 (7.5%) 9 (6.8%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 79 (59%) 80 (59.7%) 79 (59.8%) \n >30 to <=60 msec 11 (8.2%) 7 (5.2%) 10 (7.6%) \n >60 msec 44 (32.8%) 47 (35.1%) 43 (32.6%) \n WEEK 5 DAY 36 \n Value at Visit \n n 134 134 132 \n <=450 msec 107 (79.9%) 117 (87.3%) 112 (84.8%) \n >450 to <=480 msec 16 (11.9%) 5 (3.7%) 13 (9.8%) \n >480 to <= 500 msec 5 (3.7%) 9 (6.7%) 3 (2.3%) \n >500 msec 6 (4.5%) 3 (2.2%) 4 (3%) \n Change from Baseline \n n 134 134 132 \n <=30 msec 72 (53.7%) 82 (61.2%) 73 (55.3%) \n >30 to <=60 msec 10 (7.5%) 11 (8.2%) 11 (8.3%) \n >60 msec 52 (38.8%) 41 (30.6%) 48 (36.4%) \n\n\n\n\n\n\n\n\n\n\nExperimental use!\n\n\n\n\n\nWebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nCodelibrary(tern)\nlibrary(dplyr)\n\nadsl <- random.cdisc.data::cadsl\nadeg <- random.cdisc.data::cadeg\n\n# Ensure character variables are converted to factors and empty strings and NAs are explicit missing levels.\nadsl <- df_explicit_na(adsl)\nadeg <- df_explicit_na(adeg)\n\nadeg_labels <- var_labels(adeg)\nadeg_f <- adeg %>%\n filter(\n PARAMCD == \"QT\",\n ANL01FL == \"Y\"\n ) %>%\n mutate(\n AVALCAT1 = case_when(\n AVAL <= 450 ~ \"<=450 msec\",\n AVAL <= 480 ~ \">450 to <=480 msec\",\n AVAL <= 500 ~ \">480 to <= 500 msec\",\n AVAL > 500 ~ \">500 msec\",\n is.na(AVAL) ~ \"<Missing>\"\n ),\n CHGCAT1 = case_when(\n CHG <= 30 ~ \"<=30 msec\",\n CHG <= 60 ~ \">30 to <=60 msec\",\n CHG > 60 ~ \">60 msec\",\n is.na(CHG) ~ \"<Missing>\"\n )\n ) %>%\n mutate(\n AVALCAT1 = factor(\n AVALCAT1,\n levels = c(\n \"<=450 msec\",\n \">450 to <=480 msec\",\n \">480 to <= 500 msec\",\n \">500 msec\",\n \"<Missing>\"\n )\n ),\n CHGCAT1 = factor(\n CHGCAT1,\n levels = c(\n \"<=30 msec\",\n \">30 to <=60 msec\",\n \">60 msec\",\n \"<Missing>\"\n )\n )\n ) %>%\n var_relabel(\n AVALCAT1 = \"Value at Visit\",\n CHGCAT1 = \"Change from Baseline\"\n )", "crumbs": [ "Tables", "ECG", @@ -3912,7 +3912,7 @@ "href": "tables/ECG/egt05_qtcat.html#reproducibility", "title": "EGT05_QTCAT", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:11:41 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] 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2024-07-26 [1] RSPM\n zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Tables", "ECG", @@ -4009,7 +4009,7 @@ "href": "listings/vital-signs/vsl01.html#reproducibility", "title": "VSL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:09 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages 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renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:04 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Vital Signs", @@ -4033,7 +4033,7 @@ "href": "listings/lab-results/lbl01.html#reproducibility", "title": "LBL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:19 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:14 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Lab Results", @@ -4057,7 +4057,7 @@ "href": "listings/lab-results/lbl02a_rls.html#reproducibility", "title": "LBL02A_RLS", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:29 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:24 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Lab Results", @@ -4081,7 +4081,7 @@ "href": "listings/medical-history/mhl01.html#reproducibility", "title": "MHL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:39 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:34 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Medical History", @@ -4105,7 +4105,7 @@ "href": "listings/concomitant-medications/cml02a_gl.html#reproducibility", "title": "CML02A_GL", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:48 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:43 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Concomitant Medications", @@ -4129,7 +4129,7 @@ "href": "listings/concomitant-medications/cml01.html#reproducibility", "title": "CML01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:12:57 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:08:52 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Concomitant Medications", @@ -4153,7 +4153,7 @@ "href": "listings/adverse-events/ael02_ed.html#reproducibility", "title": "AEL02_ED", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:07 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n lubridate * 1.9.3 2023-09-27 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n timechange 0.3.0 2024-01-18 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:01 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n lubridate * 1.9.3 2023-09-27 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n timechange 0.3.0 2024-01-18 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Adverse Events", @@ -4177,7 +4177,7 @@ "href": "listings/adverse-events/ael01.html#reproducibility", "title": "AEL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:16 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:10 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Adverse Events", @@ -4201,7 +4201,7 @@ "href": "listings/adverse-events/ael03.html#reproducibility", "title": "AEL03", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:26 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:20 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Adverse Events", @@ -4225,7 +4225,7 @@ "href": "listings/disposition/dsl01.html#reproducibility", "title": "DSL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:35 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:29 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Disposition", @@ -4249,7 +4249,7 @@ "href": "listings/pharmacokinetic/pkcl02.html#reproducibility", "title": "PKCL02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:45 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:38 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Pharmacokinetic", @@ -4273,7 +4273,7 @@ "href": "listings/pharmacokinetic/adal01.html#reproducibility", "title": "ADAL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:13:55 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data * 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:48 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data * 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Pharmacokinetic", @@ -4297,7 +4297,7 @@ "href": "listings/pharmacokinetic/pkcl01.html#reproducibility", "title": "PKCL01", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:14:04 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:09:58 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "Pharmacokinetic", @@ -4321,7 +4321,7 @@ "href": "listings/ADA/adal02.html#reproducibility", "title": "ADAL02", "section": "Reproducibility", - "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-27 18:14:14 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-27\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9005 2024-11-27 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-27 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", + "text": "Reproducibility\nTimestamp\n\n\n[1] \"2024-11-30 18:10:07 UTC\"\n\n\nSession Info\n\n\n─ Session info ───────────────────────────────────────────────────────────────\n setting value\n version R version 4.4.1 (2024-06-14)\n os Ubuntu 22.04.5 LTS\n system x86_64, linux-gnu\n ui X11\n language (EN)\n collate en_US.UTF-8\n ctype en_US.UTF-8\n tz Etc/UTC\n date 2024-11-30\n pandoc 3.4 @ /usr/bin/ (via rmarkdown)\n\n─ Packages ───────────────────────────────────────────────────────────────────\n package * version date (UTC) lib source\n backports 1.5.0 2024-05-23 [1] RSPM\n brio 1.1.5 2024-04-24 [1] RSPM\n checkmate 2.3.2 2024-07-29 [1] RSPM\n cli 3.6.3 2024-06-21 [1] RSPM\n codetools 0.2-20 2024-03-31 [2] CRAN (R 4.4.1)\n curl 6.0.1 2024-11-14 [1] RSPM\n digest 0.6.37 2024-08-19 [1] RSPM\n dplyr * 1.1.4 2023-11-17 [1] RSPM\n evaluate 1.0.1 2024-10-10 [1] RSPM\n fansi 1.0.6 2023-12-08 [1] RSPM\n fastmap 1.2.0 2024-05-15 [1] RSPM\n formatters * 0.5.9.9006 2024-11-30 [1] https://p~\n generics 0.1.3 2022-07-05 [1] RSPM\n glue 1.8.0 2024-09-30 [1] RSPM\n htmltools 0.5.8.1 2024-04-04 [1] RSPM\n htmlwidgets 1.6.4 2023-12-06 [1] RSPM\n jsonlite 1.8.9 2024-09-20 [1] RSPM\n knitr 1.49 2024-11-08 [1] RSPM\n lifecycle 1.0.4 2023-11-07 [1] RSPM\n magrittr 2.0.3 2022-03-30 [1] RSPM\n pillar 1.9.0 2023-03-22 [1] RSPM\n pkgcache 2.2.3 2024-09-12 [1] RSPM\n pkgconfig 2.0.3 2019-09-22 [1] RSPM\n processx 3.8.4 2024-03-16 [1] RSPM\n ps 1.8.1 2024-10-28 [1] RSPM\n purrr 1.0.2 2023-08-10 [1] RSPM\n R6 2.5.1 2021-08-19 [1] RSPM\n random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~\n rlang 1.1.4 2024-06-04 [1] RSPM\n rlistings * 0.2.9.9010 2024-11-30 [1] https://p~\n rmarkdown 2.29 2024-11-04 [1] RSPM\n sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2)\n stringi 1.8.4 2024-05-06 [1] RSPM\n stringr 1.5.1 2023-11-14 [1] RSPM\n svglite 2.1.3 2023-12-08 [1] RSPM\n systemfonts 1.1.0 2024-05-15 [1] RSPM\n testthat 3.2.1.1 2024-04-14 [1] RSPM\n tibble * 3.2.1 2023-03-20 [1] RSPM\n tidyr 1.3.1 2024-01-24 [1] RSPM\n tidyselect 1.2.1 2024-03-11 [1] RSPM\n utf8 1.2.4 2023-10-22 [1] RSPM\n vctrs 0.6.5 2023-12-01 [1] RSPM\n withr 3.0.2 2024-10-28 [1] RSPM\n xfun 0.49 2024-10-31 [1] RSPM\n yaml 2.3.10 2024-07-26 [1] RSPM\n\n [1] /usr/local/lib/R/site-library\n [2] /usr/local/lib/R/library\n\n──────────────────────────────────────────────────────────────────────────────\n\n\n\n.lock file\nDownload the .lock file and use renv::restore() on it to recreate environment used to generate this website.\nDownload", "crumbs": [ "Listings", "ADA", diff --git a/development/sitemap.xml b/development/sitemap.xml index d2391b3f0..d4078908a 100644 --- a/development/sitemap.xml +++ b/development/sitemap.xml @@ -2,574 +2,574 @@ https://insightsengineering.github.io/tlg-catalog/index.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/ECG/egl01.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/pharmacokinetic/pkpl04.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/pharmacokinetic/pkpl02.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/pharmacokinetic/pkpl01.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/disposition/dsl02.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/exposure/exl01.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/adverse-events/ael02.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/adverse-events/ael01_nollt.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/adverse-events/ael04.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/concomitant-medications/cml02b_gl.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/development-safety-update-report/dsur4.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/lab-results/lbl02a.html - 2024-11-27T17:27:07.642Z + 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2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/listings/ADA/adal02.html - 2024-11-27T17:27:07.642Z + 2024-11-30T17:26:20.542Z https://insightsengineering.github.io/tlg-catalog/CODE_OF_CONDUCT.html - 2024-11-27T17:27:07.614Z + 2024-11-30T17:26:20.514Z diff --git a/development/tables/ADA/adat01.html b/development/tables/ADA/adat01.html index 39e2ded5b..3302bc6a6 100644 --- a/development/tables/ADA/adat01.html +++ b/development/tables/ADA/adat01.html @@ -1464,7 +1464,7 @@

Output

@@ -1633,7 +1633,7 @@ @@ -1783,7 +1783,7 @@

Timestamp

-
[1] "2024-11-27 18:10:08 UTC"
+
[1] "2024-11-30 18:06:06 UTC"

Session Info

@@ -1799,7 +1799,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1818,7 +1818,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1832,7 +1832,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1840,12 +1840,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1853,7 +1853,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble * 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1881,7 +1881,7 @@
diff --git a/development/tables/ADA/adat02.html b/development/tables/ADA/adat02.html index 23e2d4897..6dda10206 100644 --- a/development/tables/ADA/adat02.html +++ b/development/tables/ADA/adat02.html @@ -1465,7 +1465,7 @@

Output

@@ -1609,7 +1609,7 @@ @@ -1672,7 +1672,7 @@

Timestamp

-
[1] "2024-11-27 18:09:47 UTC"
+
[1] "2024-11-30 18:05:45 UTC"

Session Info

@@ -1688,7 +1688,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1707,7 +1707,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1721,7 +1721,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1729,12 +1729,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1742,7 +1742,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1768,9 +1768,9 @@
diff --git a/development/tables/ADA/adat03.html b/development/tables/ADA/adat03.html index 395f72e57..d66325d2c 100644 --- a/development/tables/ADA/adat03.html +++ b/development/tables/ADA/adat03.html @@ -1465,7 +1465,7 @@

Output

@@ -1604,7 +1604,7 @@ @@ -1645,7 +1645,7 @@

Timestamp

-
[1] "2024-11-27 18:10:15 UTC"
+
[1] "2024-11-30 18:06:13 UTC"

Session Info

@@ -1661,7 +1661,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1680,7 +1680,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1694,7 +1694,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1702,12 +1702,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1715,7 +1715,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1741,9 +1741,9 @@
diff --git a/development/tables/ADA/adat04a.html b/development/tables/ADA/adat04a.html index 76af36d03..e2248aedb 100644 --- a/development/tables/ADA/adat04a.html +++ b/development/tables/ADA/adat04a.html @@ -1465,7 +1465,7 @@

Output

@@ -1814,7 +1814,7 @@

Timestamp

-
[1] "2024-11-27 18:09:54 UTC"
+
[1] "2024-11-30 18:05:52 UTC"

Session Info

@@ -1830,7 +1830,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1849,7 +1849,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1863,7 +1863,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1871,12 +1871,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1884,7 +1884,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble * 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1910,9 +1910,9 @@
diff --git a/development/tables/ADA/adat04b.html b/development/tables/ADA/adat04b.html index e3ba65e64..969ff4222 100644 --- a/development/tables/ADA/adat04b.html +++ b/development/tables/ADA/adat04b.html @@ -1465,7 +1465,7 @@

Output

@@ -1606,7 +1606,7 @@ @@ -1762,7 +1762,7 @@

Timestamp

-
[1] "2024-11-27 18:10:01 UTC"
+
[1] "2024-11-30 18:05:59 UTC"

Session Info

@@ -1778,7 +1778,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1797,7 +1797,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1811,7 +1811,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1819,12 +1819,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1832,7 +1832,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble * 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1858,9 +1858,9 @@
diff --git a/development/tables/ECG/egt01.html b/development/tables/ECG/egt01.html index 318d1657e..869245d31 100644 --- a/development/tables/ECG/egt01.html +++ b/development/tables/ECG/egt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1654,7 +1654,7 @@ @@ -1850,7 +1850,7 @@

Timestamp

-
[1] "2024-11-27 18:11:19 UTC"
+
[1] "2024-11-30 18:07:15 UTC"

Session Info

@@ -1866,7 +1866,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1895,7 +1895,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1908,7 +1908,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -1921,24 +1921,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1953,17 +1953,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1996,9 +1996,9 @@
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Output

@@ -1544,7 +1544,7 @@ @@ -1613,7 +1613,7 @@ @@ -1796,7 +1796,7 @@

Timestamp

-
[1] "2024-11-27 18:10:32 UTC"
+
[1] "2024-11-30 18:06:29 UTC"

Session Info

@@ -1812,7 +1812,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1840,7 +1840,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1852,7 +1852,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1864,23 +1864,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1895,17 +1895,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1937,9 +1937,9 @@
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Output

@@ -1575,7 +1575,7 @@ @@ -1675,7 +1675,7 @@ @@ -1893,7 +1893,7 @@

Timestamp

-
[1] "2024-11-27 18:10:56 UTC"
+
[1] "2024-11-30 18:06:53 UTC"

Session Info

@@ -1909,7 +1909,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1937,7 +1937,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1949,7 +1949,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1961,23 +1961,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1992,17 +1992,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2034,7 +2034,7 @@
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Output

@@ -1544,7 +1544,7 @@ @@ -1603,7 +1603,7 @@

Timestamp

-
[1] "2024-11-27 18:11:53 UTC"
+
[1] "2024-11-30 18:07:49 UTC"

Session Info

@@ -1619,7 +1619,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1638,7 +1638,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1652,7 +1652,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1660,12 +1660,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1673,7 +1673,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1698,9 +1698,9 @@
diff --git a/development/tables/ECG/egt05_qtcat.html b/development/tables/ECG/egt05_qtcat.html index 907fac01f..377302004 100644 --- a/development/tables/ECG/egt05_qtcat.html +++ b/development/tables/ECG/egt05_qtcat.html @@ -1471,7 +1471,7 @@

Output

@@ -1517,7 +1517,7 @@ result
-
                                                                      
+
Parameter                                                             
   Analysis Visit             A: Drug X    B: Placebo    C: Combination
     Category                  (N=134)       (N=134)        (N=132)    
 ——————————————————————————————————————————————————————————————————————
@@ -1614,7 +1614,7 @@
@@ -1942,7 +1942,7 @@

Timestamp

-
[1] "2024-11-27 18:11:41 UTC"
+
[1] "2024-11-30 18:07:37 UTC"

Session Info

@@ -1958,7 +1958,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1986,7 +1986,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1998,7 +1998,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2010,23 +2010,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2041,17 +2041,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2083,9 +2083,9 @@
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Output

@@ -1591,7 +1591,7 @@
@@ -1718,7 +1718,7 @@ @@ -1832,7 +1832,7 @@ @@ -1973,7 +1973,7 @@ @@ -2254,7 +2254,7 @@

Timestamp

-
[1] "2024-11-27 18:05:40 UTC"
+
[1] "2024-11-30 18:01:40 UTC"

Session Info

@@ -2270,7 +2270,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2298,7 +2298,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2310,7 +2310,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2322,23 +2322,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2353,17 +2353,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2395,9 +2395,9 @@
diff --git a/development/tables/adverse-events/aet01_aesi.html b/development/tables/adverse-events/aet01_aesi.html index 07fe9e71f..601ff6873 100644 --- a/development/tables/adverse-events/aet01_aesi.html +++ b/development/tables/adverse-events/aet01_aesi.html @@ -1471,7 +1471,7 @@

Output

@@ -1563,7 +1563,7 @@ @@ -1697,7 +1697,7 @@ @@ -2062,7 +2062,7 @@ @@ -2308,7 +2308,7 @@ @@ -2730,7 +2730,7 @@

Timestamp

-
[1] "2024-11-27 18:03:30 UTC"
+
[1] "2024-11-30 17:59:30 UTC"

Session Info

@@ -2746,7 +2746,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2774,7 +2774,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2786,7 +2786,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2798,23 +2798,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2829,17 +2829,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2871,9 +2871,9 @@
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Output

@@ -1623,7 +1623,7 @@
@@ -1712,7 +1712,7 @@ @@ -1838,7 +1838,7 @@ @@ -1917,7 +1917,7 @@ result
-
                                                                                                        
+
MedDRA System Organ Class                                                                               
   High Level Term                                               A: Drug X    B: Placebo   C: Combination
     MedDRA Preferred Term                                        (N=134)      (N=134)        (N=132)    
 ————————————————————————————————————————————————————————————————————————————————————————————————————————
@@ -2006,7 +2006,7 @@
@@ -2084,7 +2084,7 @@ @@ -2205,7 +2205,7 @@ @@ -2310,7 +2310,7 @@ @@ -2386,7 +2386,7 @@ result
-
                                                                    
+
MedDRA System Organ Class                                           
   High Level Term           A: Drug X    B: Placebo   C: Combination
     MedDRA Preferred Term    (N=134)      (N=134)        (N=132)    
 ————————————————————————————————————————————————————————————————————
@@ -2441,7 +2441,7 @@
@@ -2546,7 +2546,7 @@ @@ -2651,7 +2651,7 @@ @@ -2750,7 +2750,7 @@ @@ -2855,7 +2855,7 @@ @@ -2953,7 +2953,7 @@ @@ -3130,7 +3130,7 @@

Timestamp

-
[1] "2024-11-27 18:06:09 UTC"
+
[1] "2024-11-30 18:02:09 UTC"

Session Info

@@ -3146,7 +3146,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -3174,7 +3174,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -3186,7 +3186,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -3198,23 +3198,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -3229,17 +3229,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -3271,9 +3271,9 @@
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Output

@@ -1570,7 +1570,7 @@
@@ -1680,7 +1680,7 @@ @@ -1910,7 +1910,7 @@

Timestamp

-
[1] "2024-11-27 18:01:36 UTC"
+
[1] "2024-11-30 17:57:36 UTC"

Session Info

@@ -1926,7 +1926,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1954,7 +1954,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1966,7 +1966,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1978,23 +1978,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2009,17 +2009,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2051,9 +2051,9 @@
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Output

@@ -1550,7 +1550,7 @@ result
-
                                                                     
+
MedDRA System Organ Class                                            
   MedDRA Preferred Term      A: Drug X    B: Placebo   C: Combination
     Severity/Intensity        (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————
@@ -1652,7 +1652,7 @@
@@ -1825,7 +1825,7 @@

Timestamp

-
[1] "2024-11-27 18:06:32 UTC"
+
[1] "2024-11-30 18:02:32 UTC"

Session Info

@@ -1841,7 +1841,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1869,7 +1869,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1881,7 +1881,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1893,23 +1893,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1924,17 +1924,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1966,9 +1966,9 @@
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Output

@@ -1588,7 +1588,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -1702,7 +1702,7 @@
@@ -1783,7 +1783,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -1897,7 +1897,7 @@
@@ -1975,7 +1975,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -2173,7 +2173,7 @@
@@ -2257,7 +2257,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -2374,7 +2374,7 @@
@@ -2494,7 +2494,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -2608,7 +2608,7 @@
@@ -2634,7 +2634,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -2748,7 +2748,7 @@
@@ -2771,7 +2771,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -2885,7 +2885,7 @@
@@ -2911,7 +2911,7 @@ result
-
                                                                                     
+
MedDRA System Organ Class                                                            
   MedDRA Preferred Term                      A: Drug X    B: Placebo   C: Combination
                             Grade             (N=134)      (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————
@@ -3025,7 +3025,7 @@
@@ -3286,7 +3286,7 @@

Timestamp

-
[1] "2024-11-27 18:04:05 UTC"
+
[1] "2024-11-30 18:00:05 UTC"

Session Info

@@ -3302,7 +3302,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -3330,7 +3330,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -3342,7 +3342,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -3354,23 +3354,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -3385,17 +3385,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -3427,9 +3427,9 @@
diff --git a/development/tables/adverse-events/aet04_files/figure-html/teal-1.png b/development/tables/adverse-events/aet04_files/figure-html/teal-1.png index 00e7d137589509d3bf2db490aa22e15978665f1a..46ef3e04c503d6924592ff78875c396750701638 100644 GIT binary patch delta 2447 zcmb_edpwhU8~0SIj~tdZ#}Y}2MUO-d4<%BML(dX(TC|6iLvolg#_f3;>e1ojacXHv zC7B{AGs9>(y(}^kHglLmhB-yE&EA{m&-e4bf4$cqzt8o@@4oKq`d;7f_rA;Ss(rnq zmO}iAxP`ctxb2<1kN~X8*gfA{q9mNl3ONHGV0+)>b{{cxJMnjsA?efZ2Uqs64s}!q zY5Sb(sM^nAyyaDeyFA#=RYzIqoz`e>OH)Oawr_vgsLOq&Z|Gg~E2C>=s8i*z-Zsfh zrE4CybCDpy#w5;J3EAsC$WK=4$Mns1$!$d7*&wye1ZcRks53s|cwk{DQJ9mPtDuKP z^_gE64%N9AFJ+k4f2G9~56)f=wK6x)E+~+79Pfm4X|aMYqNT}L6tzEGyfVu+KdN(o zb!FvH)_Es{udgpBVs&b2YIt~f;Cr*t8=9TO50dH6{()*6LG_Hj71 z%fmA>Gb;9yuKs>fK>@JHZ(CT1D(LLv@c@47?tGSog#~VoLqi56c>)$?B**0Qd3hC zSLaYQ!0H^goUy*vRd@zRPYMjw)wwUIx$NU30yr_9(ltRjlgTV9Dk`~Tq;(gB9qhwu zH-lHe!sHbzI^4RsL*-u?A`!lreT3*;iD5}3wU7gO?V4#77}mq4rY6@zY&LsOMiUWo z{rdH=zB1HjPeW);oNx$aDR>?wRwql>id^z0CMLH00dA}{$jo?};A*cgC%3Wx7xQ1u zcA@&pQS>Up(g!|2$Xsi7YN{(%nsvc0lhov5S_e}9Mum4!U?vOW43bAn%Z%h|l9zRb z2>I|0YZpJSOLliYkXcev;(DkOr0v?;TD+~vey9T!25TCN%4q5y7#Qg7^}KW`+r8Mv z+Isy-Ye2Fn7>yof0hYW=p6?k9d#D1<-$c(5u4a?8h6Sk*6}2!w9|@l8Qn350Ds^WHJPur*68x(6`v^~S9(fsGe?%S(5Xrzrq z({hDl4@jgan*U!h`Y0ME*hGcP;%2VEc)4%}qfb|4xvR$&Ix=#ReuwD4L zCmNR4GA8;~TtI}V%!c0PAVwokK61Zmu7yG!CdqH$G0fxt{OD@bkNFW42_Js&D|`j27y^^i*OLKOrUSvjkYv8RF{aO zqpDt&lxS*b{K(3gsxdKr`gsbpI+K8Ue-Dq}E4)EpSeYFJbyvH5?x1Rgx6b;XIkmO5 zr*w78sS#YG3$VImY0abTJ^`z}J)cZgN@v>OW*`nwDD;w-*VzM^Z{M2Xzf4>_UrP7= z`3rC{F(j6}(Y>4`UvgJyjbbEAX9uZD%vMZgv{edZwDIPSjEoG2TSG%bMGX!E??Tuh z@bI`u@7G>#>`#w>5rf-T&{I=aXO2Yr`1pW^^zoykQBHSk5*CYPziX-OJl7fw zHU5HrHH@Q!7eVm|j_~u{i~u8}m6`rAtaW;NdMYF*CkIq-7UBc=^$;>->s@7hM{xSj z&z#xc-r1T~*4A>+6$F`d6`VdhtB%fiY^ zGo#7Gzgm}Q2!|8K?pi*4_%IUkV7PTstUijsEHUtgwlgs7) z^)$Y2XkftC2?352v&cV>PY4bR6YS6CFT_idWw-YnhO4!mChp9N8*n;>W@m&A*I72_0*`>*3*X!A``d@{)~JKHEkPr*I|NNn7xYG*Xypy7t>GRL?#}EAXLW%#kO8=|S`qt!^tmmha>^K`8op*9~ JEOQ9_^WPw%xUv8M delta 2534 zcmcImc~sKr8g?eTTH`|Hpf*-oX5~hyfw@HCGFo2Egd#O4L(vpVa?hkD%F-Ce!6j2% za@W+<5SNU}jm)Kp3=tLAOQwjF$_R?{(|gak_niCJ{o}rWz2|qn^L@YPd7tMw@4zE) z6$N~o{2lpw@+PwKi_PLVQk0alz+;82$mlQ9BMFB#Ck4NLYdWf{sER>4MPy$Tw3a) znqOYt8(?*$sg=>)KQK_r4*W2^ zu>4KPB6W6-#LiUyJqzl8O)?xMpd=^%U@$k-cmNQkMqIfm2&6T}r9d~5m6t}gPhj@pt`inq{h9*+O~K0nZE zki*%>Jd29(_n)G`M$p(n%1^NS_wQ>txfY!zdDt%^{r&w-!QbSoW7n;zT}Tv4#Ak?K z1%J0eRFvJB00Z*-tMuwuvhtNU#maIW{#|{2{Rs7kXN;z%K|Y^9GJ-)O!zJS#V`F35 z*toF3z|z`UqOgyaf2Op$THO9{M;ETPzCLnIvC7+VZMZ37`osR*cO~2zj~qMFv7<*( zUS5{g)@UU11+?06TBio zvn(@v(#?FxpyAiINGJ`n9fQD8{DXzahdeqa`ca`p4z>c0DeLedp zAQVOadF(Fx*pE01bu~4|0#6j`^y$-55g!JWg~eGUGS$Vfb?ka@a0M@<5B!unGa+es zeaXd$N_2Ix)>Fu4s_%hJOiUsoBGS^*5Dz*!I&yMyii(PQv(|4=x%;}c6`^ZxWo1Qr zM!Rgala`&mupEbYuvj!D6tX753>+;ot#(p&QjD5or{;#6Gu=7^t&Yz_wyZPt2V4y4 zHbtUZh*PJ6f`TG(0RcvO8o($j$_IJ8LzYPn2^!Oju@vWho09tb``K*vaC212*|KmO zvo=)&a);jq494AvntvuRG7?HkJJtX3V|2?%pp~(Q76M)Q324Y@X6v}1F@9CnUvWNp zmu+$XRk>WwVzFrMC7`|AA1*8{?LHpYke7D}hbzp>%PT6{Pwfhih}eAhB*pp0L?`9b zr*n5-zZVGL_V%L1*t&aGFj!Q0IB+@6f;Tc^PM(*q-jvRnnV2MzSQC40EwJked|W`- z?7$HxPa9iXJRZL<TQ~?BHzE^pEp}HpIj*9Ol!hd&Zwqz;j-O@gSYfx*G9r^ zXo*h)>7>EhT8m?k3GN1D7sKuL_V%caDnnis`CDc_0*%+OcHe09-JL81#&GfC#oDmW z!7Ex$%U*S~++0CZM8&y^9}x}1b6s7oC7etb!{ci!-(<3uxmPVpO3G+g$CJodUgBPm zYWsxbguXsLTE0YR9u8&j{d4>*GAAumNEcl8rs(MC%rD15vj{+JElhI=1j3CQH`?0T zh@swc-Bi1+N;m3Hgk?_HA+=1T3-k&!mB zR4ibw0XD<>`mQW+Jg_%KM|C5!t;2w^g-1ncYioB$tFEi)_F53>Bs_^U!Af4^w&DI( zbIuejpRIcrDINh}nvvg6hkI8-!AV_}>M1VmSLuTx(3t04IAaKe8S|~U!*5GM8*#pm zW-F~J*0Xy8eRLtA&wgq78Z6`rw3uIo-MEq(@%M%wv zB#QRJk>OCzjEyuknXj3EYus3P?<{76k1^|h$yKkNX!Hznrwe=X_ResC!=larmqbp-`&A<&G})Hlqz5_ej8Wo3l5o~5N_ipwPb8uLel4yE%vCT5C<&$W;E^6}%x z)N>Vtpr90p0`Ol31bYreZz45$L+=mN;XTfu&v<$;l+j#XerjnkwHE@|km6hrVqBA7 zTU-0(%a^&iP>S;vx_8vv&@nh1!i=436x!I>)Q1i?1#_$J+_{qsSD;ZS2A@!ahCVXG z8356vqM>IU^R;j&k3BSG3W<;{OqZ3F0pFXNY@9riC^KW@FC>wO;<$JJ{{5j0AJ5d{ z;$lF^7BqKlFc|RLc?@*>L%>|K7e8fu`tZTR+B$ly^&Zj~NUYS{Tr3tVmdfFOj&4Gs zqGks?F&G6X-fe>-Md(}E#h*4>rL~5H2AJ|jKl

Output

@@ -1588,7 +1588,7 @@
@@ -1658,7 +1658,7 @@ @@ -1732,7 +1732,7 @@ @@ -1802,7 +1802,7 @@ @@ -1883,7 +1883,7 @@ @@ -1987,7 +1987,7 @@ @@ -2090,7 +2090,7 @@ @@ -2179,7 +2179,7 @@ @@ -2406,7 +2406,7 @@

Timestamp

-
[1] "2024-11-27 18:04:34 UTC"
+
[1] "2024-11-30 18:00:33 UTC"

Session Info

@@ -2422,7 +2422,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2450,7 +2450,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2462,7 +2462,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2474,23 +2474,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2505,17 +2505,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2547,9 +2547,9 @@
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Output

@@ -1535,7 +1535,7 @@ @@ -1600,7 +1600,7 @@ @@ -1794,7 +1794,7 @@

Timestamp

-
[1] "2024-11-27 18:02:25 UTC"
+
[1] "2024-11-30 17:58:25 UTC"

Session Info

@@ -1810,7 +1810,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1838,7 +1838,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1850,7 +1850,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1862,23 +1862,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1893,17 +1893,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1937,7 +1937,7 @@
diff --git a/development/tables/adverse-events/aet05_all.html b/development/tables/adverse-events/aet05_all.html index b2cc4c2dd..71f8fef70 100644 --- a/development/tables/adverse-events/aet05_all.html +++ b/development/tables/adverse-events/aet05_all.html @@ -1471,7 +1471,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1594,7 +1594,7 @@ @@ -1809,7 +1809,7 @@

Timestamp

-
[1] "2024-11-27 18:03:06 UTC"
+
[1] "2024-11-30 17:59:06 UTC"

Session Info

@@ -1825,7 +1825,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1853,7 +1853,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1865,7 +1865,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1877,23 +1877,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1908,17 +1908,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1950,9 +1950,9 @@
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a/development/tables/adverse-events/aet06.html b/development/tables/adverse-events/aet06.html index d24b328b1..d0dbb7fe5 100644 --- a/development/tables/adverse-events/aet06.html +++ b/development/tables/adverse-events/aet06.html @@ -1471,7 +1471,7 @@

Output

@@ -1606,7 +1606,7 @@ @@ -1734,7 +1734,7 @@ @@ -1862,7 +1862,7 @@ @@ -1991,7 +1991,7 @@ @@ -2166,7 +2166,7 @@ @@ -2380,7 +2380,7 @@

Timestamp

-
[1] "2024-11-27 18:02:03 UTC"
+
[1] "2024-11-30 17:58:04 UTC"

Session Info

@@ -2396,7 +2396,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2424,7 +2424,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2436,7 +2436,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2448,23 +2448,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2479,17 +2479,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2521,7 +2521,7 @@
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Output

@@ -1567,7 +1567,7 @@ @@ -1674,7 +1674,7 @@ @@ -1765,7 +1765,7 @@ @@ -2068,7 +2068,7 @@

Timestamp

-
[1] "2024-11-27 18:04:56 UTC"
+
[1] "2024-11-30 18:00:56 UTC"

Session Info

@@ -2084,7 +2084,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2112,7 +2112,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2124,7 +2124,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2136,23 +2136,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2167,17 +2167,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2209,9 +2209,9 @@
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Output

@@ -1552,7 +1552,7 @@ @@ -1626,7 +1626,7 @@ @@ -1863,7 +1863,7 @@

Timestamp

-
[1] "2024-11-27 18:02:46 UTC"
+
[1] "2024-11-30 17:58:46 UTC"

Session Info

@@ -1879,7 +1879,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1907,7 +1907,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1919,7 +1919,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1931,23 +1931,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1962,17 +1962,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2004,9 +2004,9 @@
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diff --git a/development/tables/adverse-events/aet09.html b/development/tables/adverse-events/aet09.html index 8bcf874a7..70e6c3c35 100644 --- a/development/tables/adverse-events/aet09.html +++ b/development/tables/adverse-events/aet09.html @@ -1471,7 +1471,7 @@

Output

@@ -1597,7 +1597,7 @@ @@ -1686,7 +1686,7 @@ result
-
                                                                                                                                 
+
Body System or Organ Class                                                                                                       
   High Level Term                                                                       A: Drug X    B: Placebo    C: Combination
     Dictionary-Derived Term                                                              (N=134)       (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
@@ -1752,7 +1752,7 @@
@@ -1930,7 +1930,7 @@

Timestamp

-
[1] "2024-11-27 18:05:17 UTC"
+
[1] "2024-11-30 18:01:18 UTC"

Session Info

@@ -1946,7 +1946,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1974,7 +1974,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1986,7 +1986,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1998,23 +1998,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2029,17 +2029,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2071,9 +2071,9 @@
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Output

@@ -1569,7 +1569,7 @@
@@ -1677,7 +1677,7 @@ @@ -1916,7 +1916,7 @@

Timestamp

-
[1] "2024-11-27 18:06:54 UTC"
+
[1] "2024-11-30 18:02:53 UTC"

Session Info

@@ -1932,7 +1932,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1960,7 +1960,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1972,7 +1972,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1984,23 +1984,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2015,17 +2015,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2057,9 +2057,9 @@
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Output

@@ -1586,7 +1586,7 @@ @@ -1670,7 +1670,7 @@ @@ -1842,7 +1842,7 @@

Timestamp

-
[1] "2024-11-27 18:07:14 UTC"
+
[1] "2024-11-30 18:03:13 UTC"

Session Info

@@ -1858,7 +1858,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1886,7 +1886,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1898,7 +1898,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1910,23 +1910,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1941,17 +1941,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1983,9 +1983,9 @@
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zCC!n;{L~kWX#5{n{eAb~0{`FF2Wb9(2gR|SSMEwTWL5n@Ij5Ak{N*(A&Hw&C=YTkH diff --git a/development/tables/concomitant-medications/cmt01.html b/development/tables/concomitant-medications/cmt01.html index 3e0969124..cd6fc3b4a 100644 --- a/development/tables/concomitant-medications/cmt01.html +++ b/development/tables/concomitant-medications/cmt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1583,7 +1583,7 @@ @@ -1679,7 +1679,7 @@ @@ -1774,7 +1774,7 @@ @@ -1884,7 +1884,7 @@ @@ -2081,7 +2081,7 @@

Timestamp

-
[1] "2024-11-27 18:00:05 UTC"
+
[1] "2024-11-30 17:56:07 UTC"

Session Info

@@ -2097,7 +2097,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2125,7 +2125,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2137,7 +2137,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2149,23 +2149,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2180,17 +2180,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2222,9 +2222,9 @@
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Output

@@ -1602,7 +1602,7 @@
@@ -1727,7 +1727,7 @@ @@ -1849,7 +1849,7 @@ @@ -1965,7 +1965,7 @@ @@ -2159,7 +2159,7 @@

Timestamp

-
[1] "2024-11-27 18:00:29 UTC"
+
[1] "2024-11-30 17:56:31 UTC"

Session Info

@@ -2175,7 +2175,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2203,7 +2203,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2215,7 +2215,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2227,23 +2227,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2258,17 +2258,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2300,9 +2300,9 @@
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Output

@@ -1564,7 +1564,7 @@ result
-
                                                                                                         
+
ATC Level 1 Text                                                                                         
   ATC Level 2 Text                                                                                       
     ATC Level 3 Text                                                                                     
       ATC Level 4 Text                                          A: Drug X    B: Placebo    C: Combination
@@ -1657,7 +1657,7 @@
@@ -1728,7 +1728,7 @@ result
-
                                                                                                     
+
ATC Level 3 Text                                                                                     
   ATC Level 2 Text                                          A: Drug X    B: Placebo    C: Combination
     Other Treatment                                          (N=134)       (N=134)        (N=132)    
 —————————————————————————————————————————————————————————————————————————————————————————————————————
@@ -1803,7 +1803,7 @@
@@ -1895,7 +1895,7 @@ result
-
                                                                                                       
+
ATC Level 1 Text                                                                                       
   ATC Level 2 Text                                                                                     
     ATC Level 3 Text                                                                                   
       ATC Level 4 Text                                         A: Drug X    B: Placebo   C: Combination
@@ -1994,7 +1994,7 @@
@@ -2185,7 +2185,7 @@

Timestamp

-
[1] "2024-11-27 18:00:54 UTC"
+
[1] "2024-11-30 17:56:55 UTC"

Session Info

@@ -2201,7 +2201,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2229,7 +2229,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2241,7 +2241,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2253,23 +2253,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2284,17 +2284,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2328,7 +2328,7 @@
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Output

@@ -1552,7 +1552,7 @@
@@ -1747,7 +1747,7 @@

Timestamp

-
[1] "2024-11-27 18:01:15 UTC"
+
[1] "2024-11-30 17:57:16 UTC"

Session Info

@@ -1763,7 +1763,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1791,7 +1791,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1803,7 +1803,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1815,23 +1815,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1846,17 +1846,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1888,9 +1888,9 @@
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diff --git a/development/tables/deaths/dtht01.html b/development/tables/deaths/dtht01.html index 5924be572..3a8d2c407 100644 --- a/development/tables/deaths/dtht01.html +++ b/development/tables/deaths/dtht01.html @@ -1465,7 +1465,7 @@

Output

@@ -1534,7 +1534,7 @@ @@ -1638,7 +1638,7 @@ @@ -1731,7 +1731,7 @@ @@ -1838,7 +1838,7 @@ @@ -1866,7 +1866,7 @@

Timestamp

-
[1] "2024-11-27 17:58:51 UTC"
+
[1] "2024-11-30 17:54:51 UTC"

Session Info

@@ -1882,7 +1882,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1901,7 +1901,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1915,7 +1915,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1923,12 +1923,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1936,7 +1936,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1961,9 +1961,9 @@
diff --git a/development/tables/demography/dmt01.html b/development/tables/demography/dmt01.html index 31c79ef9c..4c0d02034 100644 --- a/development/tables/demography/dmt01.html +++ b/development/tables/demography/dmt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1578,7 +1578,7 @@ @@ -1677,7 +1677,7 @@ @@ -1771,7 +1771,7 @@ @@ -1860,7 +1860,7 @@ @@ -1943,7 +1943,7 @@ @@ -2158,7 +2158,7 @@

Timestamp

-
[1] "2024-11-27 17:52:08 UTC"
+
[1] "2024-11-30 17:48:07 UTC"

Session Info

@@ -2174,7 +2174,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2202,7 +2202,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2214,7 +2214,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2226,23 +2226,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2257,17 +2257,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2299,9 +2299,9 @@
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Patient Disposition Table

@@ -1655,7 +1655,7 @@ @@ -1699,7 +1699,7 @@

Demographic Table

@@ -1783,7 +1783,7 @@ @@ -1815,7 +1815,7 @@

Enrollment by Country Table

@@ -1874,7 +1874,7 @@ @@ -1938,7 +1938,7 @@

Non-Serious Adverse Events Report in \(\geq\) 5% of Patients in Any Treatment Group

@@ -2014,7 +2014,7 @@ @@ -2049,7 +2049,7 @@

Death Table

@@ -2203,7 +2203,7 @@ @@ -2217,7 +2217,7 @@

Timestamp

-
[1] "2024-11-27 17:51:50 UTC"
+
[1] "2024-11-30 17:47:48 UTC"

Session Info

@@ -2233,7 +2233,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2252,7 +2252,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -2266,7 +2266,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -2274,12 +2274,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -2287,7 +2287,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -2313,9 +2313,9 @@
diff --git a/development/tables/disclosures/eudrat01.html b/development/tables/disclosures/eudrat01.html index 886b0af17..e90280f4a 100644 --- a/development/tables/disclosures/eudrat01.html +++ b/development/tables/disclosures/eudrat01.html @@ -1490,7 +1490,7 @@

Output

@@ -1573,7 +1573,7 @@ @@ -1637,7 +1637,7 @@

Timestamp

-
[1] "2024-11-27 17:51:34 UTC"
+
[1] "2024-11-30 17:47:32 UTC"

Session Info

@@ -1653,7 +1653,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1672,7 +1672,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1686,7 +1686,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1694,12 +1694,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1707,7 +1707,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1733,9 +1733,9 @@
diff --git a/development/tables/disclosures/eudrat02.html b/development/tables/disclosures/eudrat02.html index 8447d99cc..6a161e404 100644 --- a/development/tables/disclosures/eudrat02.html +++ b/development/tables/disclosures/eudrat02.html @@ -1465,7 +1465,7 @@

Output

@@ -1513,7 +1513,7 @@ result <- build_table(lyt, adae_serious_arm) result
-
                                                                                                                                                               
+
Body System or Organ Class                                                                                                                                     
   Dictionary-Derived Term                                          Patients (All)   Events (All)   Events (Related)   Events (Fatal)   Events (Fatal & Related)
 ———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
 Total number of patients with at least one serious adverse event        104                                                                                    
@@ -1550,7 +1550,7 @@
@@ -1585,7 +1585,7 @@

Timestamp

-
[1] "2024-11-27 17:51:41 UTC"
+
[1] "2024-11-30 17:47:39 UTC"

Session Info

@@ -1601,7 +1601,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1620,7 +1620,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1634,7 +1634,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1642,12 +1642,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1655,7 +1655,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1680,9 +1680,9 @@
diff --git a/development/tables/disposition/dst01.html b/development/tables/disposition/dst01.html index 22f909873..6b991c03c 100644 --- a/development/tables/disposition/dst01.html +++ b/development/tables/disposition/dst01.html @@ -1471,7 +1471,7 @@

Output

@@ -1550,7 +1550,7 @@ @@ -1628,7 +1628,7 @@ @@ -1706,7 +1706,7 @@ @@ -1919,7 +1919,7 @@

Timestamp

-
[1] "2024-11-27 18:08:05 UTC"
+
[1] "2024-11-30 18:04:03 UTC"

Session Info

@@ -1935,7 +1935,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1963,7 +1963,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1975,7 +1975,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1987,23 +1987,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2018,17 +2018,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2062,7 +2062,7 @@
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b/development/tables/disposition/pdt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1573,7 +1573,7 @@ @@ -1748,7 +1748,7 @@

Timestamp

-
[1] "2024-11-27 18:08:25 UTC"
+
[1] "2024-11-30 18:04:24 UTC"

Session Info

@@ -1764,7 +1764,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1792,7 +1792,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1804,7 +1804,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1816,23 +1816,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1847,17 +1847,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1891,7 +1891,7 @@
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Output

@@ -1547,7 +1547,7 @@
@@ -1580,7 +1580,7 @@

Timestamp

-
[1] "2024-11-27 18:07:48 UTC"
+
[1] "2024-11-30 18:03:47 UTC"

Session Info

@@ -1596,7 +1596,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1615,7 +1615,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1629,7 +1629,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1637,12 +1637,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1650,7 +1650,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1677,7 +1677,7 @@
diff --git a/development/tables/efficacy/aovt01.html b/development/tables/efficacy/aovt01.html index 708e1e9d2..8d1b92092 100644 --- a/development/tables/efficacy/aovt01.html +++ b/development/tables/efficacy/aovt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1580,7 +1580,7 @@ @@ -1793,7 +1793,7 @@

Timestamp

-
[1] "2024-11-27 17:50:38 UTC"
+
[1] "2024-11-30 17:46:36 UTC"

Session Info

@@ -1809,7 +1809,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1837,7 +1837,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1849,7 +1849,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1861,23 +1861,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1892,17 +1892,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1934,9 +1934,9 @@
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Output

@@ -1558,7 +1558,7 @@
@@ -1774,7 +1774,7 @@

Timestamp

-
[1] "2024-11-27 17:50:16 UTC"
+
[1] "2024-11-30 17:46:14 UTC"

Session Info

@@ -1790,7 +1790,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1818,7 +1818,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1830,7 +1830,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1842,23 +1842,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1873,17 +1873,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1915,9 +1915,9 @@
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Output

@@ -1585,7 +1585,7 @@ @@ -1614,7 +1614,7 @@

Timestamp

-
[1] "2024-11-27 17:46:23 UTC"
+
[1] "2024-11-30 17:42:18 UTC"

Session Info

@@ -1630,7 +1630,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1651,7 +1651,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1668,7 +1668,7 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1676,12 +1676,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) @@ -1690,7 +1690,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1718,9 +1718,9 @@
diff --git a/development/tables/efficacy/cfbt01.html b/development/tables/efficacy/cfbt01.html index e8102a3d1..eb3520438 100644 --- a/development/tables/efficacy/cfbt01.html +++ b/development/tables/efficacy/cfbt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1539,7 +1539,7 @@ result 
                               A: Drug X                        B: Placebo                      C: Combination         
-                                      Change from                       Change from                       Change from  
+Parameter                             Change from                       Change from                       Change from  
   Analysis Visit    Value at Visit      Baseline      Value at Visit      Baseline      Value at Visit      Baseline   
 ———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
 BFI All Questions                                                                                                      
@@ -1598,7 +1598,7 @@
@@ -1803,7 +1803,7 @@

Timestamp

-
[1] "2024-11-27 17:46:10 UTC"
+
[1] "2024-11-30 17:42:05 UTC"

Session Info

@@ -1819,7 +1819,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1848,7 +1848,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1861,7 +1861,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -1874,24 +1874,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1906,17 +1906,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1949,9 +1949,9 @@
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Output

@@ -1576,7 +1576,7 @@
@@ -1741,7 +1741,7 @@ @@ -1914,7 +1914,7 @@

Timestamp

-
[1] "2024-11-27 17:45:02 UTC"
+
[1] "2024-11-30 17:40:58 UTC"

Session Info

@@ -1930,7 +1930,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1958,7 +1958,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1970,7 +1970,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1982,23 +1982,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2013,17 +2013,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2055,9 +2055,9 @@
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Output

@@ -1545,7 +1545,7 @@
@@ -1618,7 +1618,7 @@ @@ -1693,7 +1693,7 @@ @@ -1776,7 +1776,7 @@ @@ -1986,7 +1986,7 @@

Timestamp

-
[1] "2024-11-27 17:45:24 UTC"
+
[1] "2024-11-30 17:41:20 UTC"

Session Info

@@ -2002,7 +2002,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2033,7 +2033,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ Formula 1.2-5 2023-02-24 [1] RSPM geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM @@ -2046,7 +2046,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2058,23 +2058,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2089,17 +2089,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2131,9 +2131,9 @@
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a/development/tables/efficacy/coxt02.html +++ b/development/tables/efficacy/coxt02.html @@ -1471,7 +1471,7 @@

Output

@@ -1548,7 +1548,7 @@ @@ -1638,7 +1638,7 @@ @@ -1840,7 +1840,7 @@

Timestamp

-
[1] "2024-11-27 17:46:39 UTC"
+
[1] "2024-11-30 17:42:35 UTC"

Session Info

@@ -1856,7 +1856,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1887,7 +1887,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ Formula 1.2-5 2023-02-24 [1] RSPM geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM @@ -1900,7 +1900,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1912,23 +1912,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1943,17 +1943,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1985,9 +1985,9 @@
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Output

@@ -1585,7 +1585,7 @@ @@ -1695,7 +1695,7 @@ @@ -1805,7 +1805,7 @@ @@ -1913,7 +1913,7 @@ @@ -2136,7 +2136,7 @@

Timestamp

-
[1] "2024-11-27 17:45:48 UTC"
+
[1] "2024-11-30 17:41:44 UTC"

Session Info

@@ -2152,7 +2152,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2180,7 +2180,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2192,7 +2192,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2204,23 +2204,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2235,17 +2235,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2277,9 +2277,9 @@
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Output

@@ -1548,7 +1548,7 @@
@@ -1638,7 +1638,7 @@ @@ -1720,7 +1720,7 @@ @@ -1811,7 +1811,7 @@ @@ -2020,7 +2020,7 @@

Timestamp

-
[1] "2024-11-27 17:49:55 UTC"
+
[1] "2024-11-30 17:45:52 UTC"

Session Info

@@ -2036,7 +2036,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2067,7 +2067,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ Formula 1.2-5 2023-02-24 [1] RSPM geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM @@ -2080,7 +2080,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2092,23 +2092,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2123,17 +2123,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2165,9 +2165,9 @@
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Timestamp

-
[1] "2024-11-27 17:49:12 UTC"
+
[1] "2024-11-30 17:45:08 UTC"

Session Info

@@ -1979,7 +1979,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2008,7 +2008,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2020,7 +2020,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2029,28 +2029,28 @@ Matrix 1.7-1 2024-10-18 [1] RSPM memoise 2.0.1 2021-11-26 [1] RSPM mime 0.12 2021-09-28 [1] RSPM - mmrm 0.3.14.9001 2024-11-27 [1] https://p~ + mmrm 0.3.14.9001 2024-11-30 [1] https://p~ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) parallelly 1.39.0 2024-11-07 [1] RSPM pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2065,18 +2065,18 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ - tern.mmrm * 0.3.2.9002 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ + tern.mmrm * 0.3.2.9002 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM diff --git a/development/tables/efficacy/mmrmt01_files/figure-html/teal-1.png b/development/tables/efficacy/mmrmt01_files/figure-html/teal-1.png index 08d2fba7817fea5be0f8dfa426f557a64967f2a9..628e943f107277494326083be475550884537224 100644 GIT binary patch delta 10153 zcmY*$)4F1NeIbaA3ctE9!VYJ*eXfJA#seX%3eu! 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Output

@@ -1542,7 +1542,7 @@ @@ -1611,7 +1611,7 @@ @@ -1678,7 +1678,7 @@ @@ -1747,7 +1747,7 @@ @@ -1982,7 +1982,7 @@

Timestamp

-
[1] "2024-11-27 17:49:32 UTC"
+
[1] "2024-11-30 17:45:28 UTC"

Session Info

@@ -1998,7 +1998,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2028,7 +2028,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2041,7 +2041,7 @@ jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM labeling 0.4.3 2023-08-29 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2053,24 +2053,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM ragg 1.3.3 2024-09-11 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2085,17 +2085,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM textshaping 0.4.0 2024-05-24 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) @@ -2130,7 +2130,7 @@
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z8M>DRom_)t`}|3zM8JlYw<{A3V9)<8fl$(l4G-GOS#hYv** zyoZK?*WvLC!KS*yh!j~F;2X@?Vhj}0S;JIeIubAPq1XN+;)9k>M0XKt&>z**!>s*0$0P-j?v9@kg4;c?rMysqPY7k`U zuZv7fv;ppe>S>f`LBDXm-VzpwAXv(haItpk*9S3?ZkwtIQ!oKDuG0O diff --git a/development/tables/efficacy/ratet01.html b/development/tables/efficacy/ratet01.html index ea434125b..dbd4d6c89 100644 --- a/development/tables/efficacy/ratet01.html +++ b/development/tables/efficacy/ratet01.html @@ -1465,7 +1465,7 @@

Output

@@ -1592,7 +1592,7 @@ @@ -1619,7 +1619,7 @@

Timestamp

-
[1] "2024-11-27 17:46:53 UTC"
+
[1] "2024-11-30 17:42:48 UTC"

Session Info

@@ -1635,7 +1635,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1657,7 +1657,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1674,7 +1674,7 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1682,12 +1682,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) @@ -1696,7 +1696,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1724,9 +1724,9 @@
diff --git a/development/tables/efficacy/rbmit01.html b/development/tables/efficacy/rbmit01.html index e38793bea..770de6f7b 100644 --- a/development/tables/efficacy/rbmit01.html +++ b/development/tables/efficacy/rbmit01.html @@ -1519,8 +1519,8 @@ 

 SAMPLING FOR MODEL 'rbmi_mmrm' NOW (CHAIN 1).
 Chain 1: 
-Chain 1: Gradient evaluation took 0.000217 seconds
-Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.17 seconds.
+Chain 1: Gradient evaluation took 0.000239 seconds
+Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.39 seconds.
 Chain 1: Adjust your expectations accordingly!
 Chain 1: 
 Chain 1: 
@@ -1538,8 +1538,8 @@
 Chain 1: Iteration: 1200 / 1200 [100%]  (Sampling)
 Chain 1: 
 Chain 1:  Elapsed Time: 0.502 seconds (Warm-up)
-Chain 1:                1.634 seconds (Sampling)
-Chain 1:                2.136 seconds (Total)
+Chain 1:                1.639 seconds (Sampling)
+Chain 1:                2.141 seconds (Total)
 Chain 1:
@@ -1715,7 +1715,7 @@

Timestamp

-
[1] "2024-11-27 17:48:21 UTC"
+
[1] "2024-11-30 17:44:16 UTC"

Session Info

@@ -1731,7 +1731,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1751,7 +1751,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1768,9 +1768,9 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM matrixStats 1.4.1 2024-09-08 [1] CRAN (R 4.4.1) - mmrm 0.3.14.9001 2024-11-27 [1] https://p~ + mmrm 0.3.14.9001 2024-11-30 [1] https://p~ munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgbuild 1.4.5 2024-10-28 [1] RSPM @@ -1782,14 +1782,14 @@ QuickJSR 1.4.0 2024-10-01 [1] CRAN (R 4.4.1) R6 2.5.1 2021-08-19 [1] RSPM rbibutils 2.3 2024-10-04 [1] RSPM - rbmi * 1.3.0.9000 2024-11-27 [1] https://p~ + rbmi * 1.3.0.9000 2024-11-30 [1] https://p~ Rcpp 1.0.13-1 2024-11-02 [1] RSPM RcppParallel 5.1.9 2024-08-19 [1] CRAN (R 4.4.1) Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM rstan 2.32.6 2024-03-05 [1] CRAN (R 4.4.1) - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) StanHeaders 2.32.10 2024-07-15 [1] CRAN (R 4.4.1) @@ -1798,8 +1798,8 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.rbmi * 0.1.4.9001 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.rbmi * 0.1.4.9001 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM diff --git a/development/tables/efficacy/rspt01.html b/development/tables/efficacy/rspt01.html index 1239c6af4..57b61d0f2 100644 --- a/development/tables/efficacy/rspt01.html +++ b/development/tables/efficacy/rspt01.html @@ -1483,7 +1483,7 @@

Output

@@ -1578,7 +1578,7 @@ @@ -1660,7 +1660,7 @@ @@ -1758,7 +1758,7 @@ @@ -1870,7 +1870,7 @@ @@ -1942,7 +1942,7 @@ @@ -2018,7 +2018,7 @@ @@ -2233,7 +2233,7 @@

Timestamp

-
[1] "2024-11-27 17:44:37 UTC"
+
[1] "2024-11-30 17:40:32 UTC"

Session Info

@@ -2249,7 +2249,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2277,7 +2277,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2289,7 +2289,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2301,23 +2301,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2332,17 +2332,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2374,9 +2374,9 @@
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z8e(SwNvy|n1e8XLEQq|SZLklvO03*(!@7sPniQh-UYcpqa z%bJ`=P`QUssUxgXf@{7ZGU(FsUGO1q-wsxccb~7|^<{zWF!c1? z0u5~luNZWEt6qT_p3@q9uj%P&DJ;BZlLTHF*kV~(+Fm~;<8ULOViELgKtF)mv9YlM z4Uy#m+y)vS{0(zbB|@aa*_Y0VTF%UeNLcM%kA|k}x?#?rntCs{;(uok{7YtEmmBTM V;tiU8EKRwO(lynqsq*)p{vR#~v&H}b diff --git a/development/tables/efficacy/ttet01.html b/development/tables/efficacy/ttet01.html index 1c2ef5b8b..196e43d7b 100644 --- a/development/tables/efficacy/ttet01.html +++ b/development/tables/efficacy/ttet01.html @@ -1471,7 +1471,7 @@

Output

@@ -1606,7 +1606,7 @@ @@ -1711,7 +1711,7 @@ @@ -1843,7 +1843,7 @@ @@ -1970,7 +1970,7 @@ @@ -2087,7 +2087,7 @@ @@ -2224,7 +2224,7 @@ @@ -2447,7 +2447,7 @@

Timestamp

-
[1] "2024-11-27 17:48:43 UTC"
+
[1] "2024-11-30 17:44:38 UTC"

Session Info

@@ -2463,7 +2463,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2491,7 +2491,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2503,7 +2503,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2515,23 +2515,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2546,17 +2546,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2588,9 +2588,9 @@
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Output

@@ -1576,7 +1576,7 @@ @@ -1707,7 +1707,7 @@ @@ -1855,7 +1855,7 @@ @@ -2123,7 +2123,7 @@

Timestamp

-
[1] "2024-11-27 18:07:37 UTC"
+
[1] "2024-11-30 18:03:36 UTC"

Session Info

@@ -2139,7 +2139,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2168,7 +2168,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2181,7 +2181,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -2194,24 +2194,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2226,17 +2226,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2269,9 +2269,9 @@
diff --git a/development/tables/exposure/ext01_files/figure-html/teal-1.png b/development/tables/exposure/ext01_files/figure-html/teal-1.png index 115f8d3290cebf22b94c8c632b08fdef229ee973..e81dd3c76ce84c718a4fd9947a5ca027647f00f5 100644 GIT binary patch delta 3222 zcmX9=2{=^y8!rED*DW+{6Uog8qv%o?`*Ni;k|kvwlP<;@%8X?!Cta=@%Y>M0V>c-p z%`kSdMiR1R9sAl??_ex5|HJ*B^PJ~*&iO6x`+e{CeW#y(EWYH}v#`U(eBz-;MeLCJ zf8HmpKIbzgjYaakB#B4y{Z@MPIp5jiUV(ty!osF%jjyLyCmFJ`ya3Pn86T;X@wW0D(u^%u$uT zALuk@a8X^k`34{@P3@IsYh>hBfAkZgwz5Y{;U#Gr8zJbCl|(fP$e-gSPc} zbGtrgw8+6aO|Nml3EKVCG%=yJ8Wo$8fsQiL)Z8GUVT}!)ShGA?*=rTf{%ce09enlD zBX2zNTWXXVBfEb|Flswo!UO8iR6hm6ltRk2lDqpfd>M~FxpcPDXuf~OwLw?!nmZeM zOgY-)y}za>oUv0{zUF?d;wb#Qmta|z5jR8g`f3ra1qfaooqHy43ede=H&Q!`*KW6a zV+0S-aSuImf?~2mIJ;XcHVgSN@xJp^`l;;6taiN@$+B8^=(9N$1?DGi@X$=I9;&A) zCi8i~ht!<8u2%d0&c+q}40rE|hVMqOM%?n>t)Gf*IxnVvC?8y(jT1;|@~02^?bSDKGKIyw;xtz~x{RoBW zzaAI^RQGaXRkMvS*=YVp(F#Vt@J3lk<-_|Bo+XASSho=PkKBO9!xXy`lU&+xL%hl1 z5zFg#N2`nTRqx(~-2cN?AD`N*sPN=t@Rm*g--5p^y_53U3F2yO8UTJ|Pv-sI&F~Y1 zEo!wiK_aJC*)UErB+^*rJ#mfcsl|{!VA@G5;w~1`0gwKqZ@&Szg9m2UH43C*`i2E; zOsNU~H4*+^bTvgLi(|nnE^vh3Bu&HF0w(O8U7%d!)I|q$sxti2Xy0)uJOc zoy91n4k={4tKzbTpGtkk@m51u&!DK@o*#oilVVms5*n{9dwFIz?N69~n3-jb0%uH$ zT9KU;OP+XwrJy@|Av}yQcW};0*HmBM!?~49p0`F zsZA>EmD9ku_v?g&n+68J=7?Y9IeB9wGHHIGv(x^15;~aOo0J$66SKXIw@z%w_yh!$ zH;fC5h^RfCYU$~D4f%_+HZ39|0yj>bo0~J;ArgsHtB>_AN(dE|_g6!8#g&zDd)w?G z#^dgJY@Fn8FsK}0Wr{)-_?G#vPUPMpg+WgIu30qTfv?s^Abi(n+Ubol8jVKAdmK>TT|XvEhv?0*w@>Ko0;bj4!Q217JPp4hD|@l^7p|Gi8Fl{^ z`v(sa+NRY3ZqSVz4gUy=y1Bdi`1q`^tt~NYYrU8?COUiA-ggh&fLdm4;O5fLpB|A- zYZH<3@1l1$Shi)}nfT3k6YXo~qlr~_{@k}v$X_6BQ58?4+qe0BXha-1Z*6U@2k7ac z1XeK^jG`h14UI}Vot~G6X-m8cHzCVix$@=f*9)SeJ8Nz7Iy*lV(_*F-_8C0m`PH|} zVNz7Q(C+TD57*-fTWKOe zXF5Am&{Senl$@+=itF<7vX1xIr z);K|Nl2>gR9!taJc6N3YUO+7k5yML0?9jfkRSN@=-<4Ve*&SbJUu(xaRdtb zLQG67H#e8g{E(mT3X0k7mz!oA%gp6b|K^bWt3vASqcl|j}kuP87 z7Zm&i0}JNDaJdg$TDq^mI{wX@IX2!TO`Sa&xUBVl`Q*MA4@L8<(BF{B-0ekbIE0WT z35RzWL$|lLbzu`kABeASm7WHF8(4wzsx^v?)9%kJiM_nLc>X8-Hu4yE{HHF)z{3#H2Q45C8Nj zjk(M$^?HazB2lPRe0>vGb3RX+8K`P%{=}-M8B+#4pn6t?7Pym*KVQCWQ@S7&F<6FY zyWt+UtgLv0K88pL3rI^!3J40ST@b>B-^AmA?at0ukSvgV1M8!wGimX?*Ns;Kzob&NMeT!prQ1qG8n28LyO0~qq^2mwQl zn{hP!yROKkOM<n zk!4`W??!b=p-xUt`JC`Ci|lWx4y>>0g%rf&dp^-^B>B&cjlvMzHyh~Q_>fv&EbDhP)pDdeQ(8#FZ%N2&jYMSWp2Iiz^(wQ9u_vlstH)nOZL2=1B3)&vHyO|#YkUQv`+7sUFU>B za5!8)^`T$oh~Lt%*$%2EXkcJM54w8Ay}h)?QWLwulqEg@f^t0BB?}E;uJ7k z6I|JjxpVurspYZVtw~})K)~wiDvQO^PN(MQBl%B?h?G0EB_2Qb#~Y(OYR$G`a8P&N zU7?7E*>&r}K7%VeK{ZK*B0>?D;BaS9KVavQkeFciKjbCAa`WsFaeMdlm`>e%Hcd!F4n_3i!>yKnKAvg

^*Vos7O(OAD8cxJX zs$GbQi#r9X!+X5mtA^9;qLkb|Gdzr<4^%m}#(^cba%2gs-b>?fI1wig~;%X`P-Gq;J9K#$# z8Cpjtet4gjk$i1Z-_Rr$is~#-fcY%x^J3SPnm!C7^#^OANRvOm9B_{!cm^L%H!#^J ztT3c|NT^SPqOa*cL4u8D^8W*+^)>F6jrSO~9Q6*Ud-(J`nVC9nd zm9WA|{D{39;F`C^n|zBW0@?)^AvTEWR*uRYLZ(z9s{NB!qp5W!Yb~s4?Nv|c4x?uM z;q?{Ph}uM*2e6DOrkgS^zdW$FEAP1BpEd{FKTHh|Ed+VU4Y|gM?2PHq17<#R;4^M- zL$y^dWG0s}2fvTLP%1Zm#g@Y#+50Z1Y8JSX@TNhws}l#~$lK!`gGJMJSU;jgT(!g% zz6N|R9B%gz+Zj^xQk}(G!*w*vyBy`zp8>w1-&9UPY+g5w%+1xR=l93GJIF$tt!bmp zB;8gj%eDfaX6j$rzBMwo0%f_%T%BH?DWn@c8GMj%`3m75ZB=$`0vF$r6T>)vK?2yn z`r~8ci!^ev!$DRg#NCqOi8{JhT!etRyC^E(WflL9s1)UeNb5#EbS%+pMT^3(I!aGi zRw(zo*x4TA*>z3A3cffs=uwt5 z?$S3?&bejISk*WrgU4NBTdL=0sPEOdCSeekV~9w~_tfv}=x$!@4tF4tpzY=<(_r@6 zCD?s!NVJGRBO2}XK}L!9r04r=H@sSnLt`F_&wJo{RGLTvp3;ogy#h(CMOIlq4?+p% zmEtiXlJ|VXd`It(I3PqJ2H9F|O=mZ9lcDXcnTZ0BXv!%<)e;sBvpBg|f~So|Mod}k z-*^5wA(@(`!1#D4M&i&8U2ChSE=fF!^rqfTu&#uQeAs zoUrV-oG|RbVfmDhap`P3``_TTg}{shVsO@D4eHIm3+K6 zkl3_Y=nwhA%d1MzbUfs6r`$nN=gct zTU6^{&B)mJxTAx^_K=DT5?N4JXJdYz1mbC%9MXc7mDP`#8GKpURdsa} zW8;oWdkYH-TiXrKcXT@a>CCrcTBV|jiVE)9V^_;AN#BN_oJ;<-lQwBi&$!e-Wc)T(nAzFci=QeA3JMmpz{Nr_a7=X(tu%iBE}X@kdsP{R z1>h1MF9Py~PVngJ>T*!Fc5|DapD%+V;`0hVemo4B1Lo%9}pkUL} z#StlypPl^y{atqWs{SLV(*sXqkO4CJ_3PJuU6YgV+oy}cC@EPA*7bI?w6sK{%N_C7 z`xBg1hkAQ+m9eo232Nd;;IY-!)k=2N2E602t5>T+mVb1#6NyCjFwv+n!at_Y7(p zR#sBd$@DL&d##;ZSEm&q3l{=8QFTS3P|nWI?MdgRW-=+LfH$C)`k4O8*oR(TU#I*U zR{D%onzoikN3%!R$AUQX^NPyKNpW#D1V-|^!Dy#JYo84M}2;;9D6q^&QGvu0^p3+MeYVa(J+nC zg;fD5-JN36vrTr5UA2$-^bzV9Dd+;?j;Sdx?3T{;>tvS}0ip#sm1bs`F2>U4HaHy& z218z6e(sQ%k&%&i?BwdEhld9^Hvo81Py~@?6rorSZD0ybQS3@gOgw%1bn<>H?yp~< zOGxPi8slkpilR*uJH5B0B@){Nk4qJ)Q}wk41O#NA+>k~WPlZ;k4GdTy5OHTRb=!3I zApVgR5xJ~r`c9jxNs^DREOCGQ_~$eRrmUo-q^Njgb$x5OM@h5`$kl(&`{FJY3B=KSj$8X6YJo8>h%tF2;A76c3^N^rEM+c7Ne#^Q}E zc&ttk2kGt(7~VXQtOSyP5p{YRxZ4`Otvl<6p9&0qE66m zo0yE%_~ORUzKG^#`lrnKhQ!i1BZ9m%ETC3~bsQ(gU? z*3+A5jIuIC(ij=#1LT?(R8&-yl#~<~BhnbPwY8m{o$9!eu`%}Yy7$9}R1Das(JHV0 zLR^HcwKX<9{ehJg2q7&wIrp39rArT~NNZx*JzLvQ-qt$7qi2}?%Q9r|K;dh$*AD#m zuY&JrXk^&G#=|EinQ?HBk$+^b2=nn_w-foVh|L1~=E%m+E2f!hyYCQ&rUvD3=g9v8 D+Z7n^ diff --git a/development/tables/lab-results/lbt01.html b/development/tables/lab-results/lbt01.html index bee84f66f..b97c8d6fa 100644 --- a/development/tables/lab-results/lbt01.html +++ b/development/tables/lab-results/lbt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1592,7 +1592,7 @@ @@ -1791,7 +1791,7 @@

Timestamp

-
[1] "2024-11-27 17:54:19 UTC"
+
[1] "2024-11-30 17:50:18 UTC"

Session Info

@@ -1807,7 +1807,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1836,7 +1836,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1849,7 +1849,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -1862,24 +1862,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1894,17 +1894,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1937,9 +1937,9 @@
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Output

@@ -1568,7 +1568,7 @@ @@ -1762,7 +1762,7 @@

Timestamp

-
[1] "2024-11-27 17:56:54 UTC"
+
[1] "2024-11-30 17:52:55 UTC"

Session Info

@@ -1778,7 +1778,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1807,7 +1807,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1820,7 +1820,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -1833,24 +1833,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1865,17 +1865,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1908,9 +1908,9 @@
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a/development/tables/lab-results/lbt03.html b/development/tables/lab-results/lbt03.html index 80de9e591..9406f1aec 100644 --- a/development/tables/lab-results/lbt03.html +++ b/development/tables/lab-results/lbt03.html @@ -1471,7 +1471,7 @@

Output

@@ -1569,7 +1569,7 @@ @@ -1675,7 +1675,7 @@ @@ -1921,7 +1921,7 @@

Timestamp

-
[1] "2024-11-27 17:55:20 UTC"
+
[1] "2024-11-30 17:51:22 UTC"

Session Info

@@ -1937,7 +1937,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1966,7 +1966,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1979,7 +1979,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -1992,24 +1992,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2024,17 +2024,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2067,9 +2067,9 @@
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Output

@@ -1727,7 +1727,7 @@

Timestamp

-
[1] "2024-11-27 17:56:26 UTC"
+
[1] "2024-11-30 17:52:27 UTC"

Session Info

@@ -1743,7 +1743,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1771,7 +1771,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1783,7 +1783,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1795,23 +1795,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1826,17 +1826,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1868,9 +1868,9 @@
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Output

@@ -1560,7 +1560,7 @@
@@ -1650,7 +1650,7 @@ @@ -1746,7 +1746,7 @@ @@ -1828,7 +1828,7 @@

Timestamp

-
[1] "2024-11-27 17:55:03 UTC"
+
[1] "2024-11-30 17:51:04 UTC"

Session Info

@@ -1844,7 +1844,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1863,7 +1863,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1877,7 +1877,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1885,12 +1885,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1898,7 +1898,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1924,9 +1924,9 @@
diff --git a/development/tables/lab-results/lbt06.html b/development/tables/lab-results/lbt06.html index e5752f9fd..b722b224d 100644 --- a/development/tables/lab-results/lbt06.html +++ b/development/tables/lab-results/lbt06.html @@ -1465,7 +1465,7 @@

Output

@@ -1508,7 +1508,7 @@ result
-
                                                                                       
+
Visit                                                                                  
   Analysis Reference Range Indicator     A: Drug X        B: Placebo     C: Combination
     Baseline Status                       (N=134)          (N=134)          (N=132)    
 ———————————————————————————————————————————————————————————————————————————————————————
@@ -1582,7 +1582,7 @@
@@ -1622,7 +1622,7 @@ result
-
                                                                                         
+
Parameter                                                                                
   Visit                                                                                  
     Analysis Reference Range Indicator     A: Drug X        B: Placebo     C: Combination
       Baseline Status                       (N=134)          (N=134)          (N=132)    
@@ -1780,7 +1780,7 @@
@@ -1817,7 +1817,7 @@

Timestamp

-
[1] "2024-11-27 17:54:33 UTC"
+
[1] "2024-11-30 17:50:33 UTC"

Session Info

@@ -1833,7 +1833,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1852,7 +1852,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1866,7 +1866,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1874,12 +1874,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1887,7 +1887,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1912,9 +1912,9 @@
diff --git a/development/tables/lab-results/lbt07.html b/development/tables/lab-results/lbt07.html index 4c4585c79..09e7bcda6 100644 --- a/development/tables/lab-results/lbt07.html +++ b/development/tables/lab-results/lbt07.html @@ -1471,7 +1471,7 @@

Output

@@ -1520,7 +1520,7 @@ result
-
                                                                                   
+
Parameter                                                                          
   Direction of Abnormality                 A: Drug X    B: Placebo   C: Combination
             Highest NCI CTCAE Grade         (N=134)      (N=134)        (N=132)    
 ———————————————————————————————————————————————————————————————————————————————————
@@ -1576,7 +1576,7 @@
@@ -1797,7 +1797,7 @@

Timestamp

-
[1] "2024-11-27 17:55:43 UTC"
+
[1] "2024-11-30 17:51:43 UTC"

Session Info

@@ -1813,7 +1813,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1841,7 +1841,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats * 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1853,7 +1853,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1865,23 +1865,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1896,17 +1896,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1938,9 +1938,9 @@
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Output

@@ -1502,7 +1502,7 @@ result
-
                                                                              
+
Parameter Code                                                                
   Direction of Abnormality        ARM A            ARM B            ARM C     
     Highest NCI CTCAE Grade      (N=134)          (N=134)          (N=132)    
 ——————————————————————————————————————————————————————————————————————————————
@@ -1558,7 +1558,7 @@
@@ -1603,7 +1603,7 @@

Timestamp

-
[1] "2024-11-27 17:56:37 UTC"
+
[1] "2024-11-30 17:52:39 UTC"

Session Info

@@ -1619,7 +1619,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1638,7 +1638,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1652,7 +1652,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1660,12 +1660,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1673,7 +1673,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1698,9 +1698,9 @@
diff --git a/development/tables/lab-results/lbt09.html b/development/tables/lab-results/lbt09.html index 978177681..3f8f71f0f 100644 --- a/development/tables/lab-results/lbt09.html +++ b/development/tables/lab-results/lbt09.html @@ -1465,7 +1465,7 @@

Output

@@ -1573,7 +1573,7 @@ @@ -1674,7 +1674,7 @@ @@ -1778,7 +1778,7 @@

Timestamp

-
[1] "2024-11-27 17:53:56 UTC"
+
[1] "2024-11-30 17:49:54 UTC"

Session Info

@@ -1794,7 +1794,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1813,7 +1813,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1827,7 +1827,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1835,12 +1835,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1848,7 +1848,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1875,7 +1875,7 @@
diff --git a/development/tables/lab-results/lbt10.html b/development/tables/lab-results/lbt10.html index f8ee49a91..4c9076a8c 100644 --- a/development/tables/lab-results/lbt10.html +++ b/development/tables/lab-results/lbt10.html @@ -1465,7 +1465,7 @@

Output

@@ -1539,7 +1539,7 @@ @@ -1606,7 +1606,7 @@ @@ -1649,7 +1649,7 @@

Timestamp

-
[1] "2024-11-27 17:58:07 UTC"
+
[1] "2024-11-30 17:54:07 UTC"

Session Info

@@ -1665,7 +1665,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1684,7 +1684,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1698,7 +1698,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1706,12 +1706,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1719,7 +1719,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1744,9 +1744,9 @@
diff --git a/development/tables/lab-results/lbt10_bl.html b/development/tables/lab-results/lbt10_bl.html index c58a0d980..b600286f9 100644 --- a/development/tables/lab-results/lbt10_bl.html +++ b/development/tables/lab-results/lbt10_bl.html @@ -1465,7 +1465,7 @@

Output

@@ -1539,7 +1539,7 @@ @@ -1606,7 +1606,7 @@ @@ -1649,7 +1649,7 @@

Timestamp

-
[1] "2024-11-27 17:58:14 UTC"
+
[1] "2024-11-30 17:54:15 UTC"

Session Info

@@ -1665,7 +1665,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1684,7 +1684,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1698,7 +1698,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1706,12 +1706,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1719,7 +1719,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1744,9 +1744,9 @@
diff --git a/development/tables/lab-results/lbt11.html b/development/tables/lab-results/lbt11.html index 4a0f40709..bf5ea017c 100644 --- a/development/tables/lab-results/lbt11.html +++ b/development/tables/lab-results/lbt11.html @@ -1471,7 +1471,7 @@

Output

@@ -1556,7 +1556,7 @@ @@ -1625,7 +1625,7 @@ @@ -1718,7 +1718,7 @@ @@ -1958,7 +1958,7 @@

Timestamp

-
[1] "2024-11-27 17:57:55 UTC"
+
[1] "2024-11-30 17:53:55 UTC"

Session Info

@@ -1974,7 +1974,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2002,7 +2002,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2014,7 +2014,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2026,23 +2026,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2057,17 +2057,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2099,9 +2099,9 @@
diff --git a/development/tables/lab-results/lbt11_bl.html b/development/tables/lab-results/lbt11_bl.html index 24ce10396..0cd4ec78e 100644 --- a/development/tables/lab-results/lbt11_bl.html +++ b/development/tables/lab-results/lbt11_bl.html @@ -1471,7 +1471,7 @@

Output

@@ -1555,7 +1555,7 @@ @@ -1623,7 +1623,7 @@ @@ -1715,7 +1715,7 @@ @@ -1955,7 +1955,7 @@

Timestamp

-
[1] "2024-11-27 17:56:05 UTC"
+
[1] "2024-11-30 17:52:06 UTC"

Session Info

@@ -1971,7 +1971,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1999,7 +1999,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2011,7 +2011,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2023,23 +2023,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2054,17 +2054,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2096,9 +2096,9 @@
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Output

@@ -1540,7 +1540,7 @@
@@ -1592,7 +1592,7 @@

Timestamp

-
[1] "2024-11-27 17:57:38 UTC"
+
[1] "2024-11-30 17:53:39 UTC"

Session Info

@@ -1608,7 +1608,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1627,7 +1627,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1641,7 +1641,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1649,12 +1649,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1662,7 +1662,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1687,9 +1687,9 @@
diff --git a/development/tables/lab-results/lbt12_bl.html b/development/tables/lab-results/lbt12_bl.html index 2c37ca43a..a823456b1 100644 --- a/development/tables/lab-results/lbt12_bl.html +++ b/development/tables/lab-results/lbt12_bl.html @@ -1465,7 +1465,7 @@

Output

@@ -1540,7 +1540,7 @@ @@ -1592,7 +1592,7 @@

Timestamp

-
[1] "2024-11-27 17:54:03 UTC"
+
[1] "2024-11-30 17:50:01 UTC"

Session Info

@@ -1608,7 +1608,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1627,7 +1627,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1641,7 +1641,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1649,12 +1649,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1662,7 +1662,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1687,9 +1687,9 @@
diff --git a/development/tables/lab-results/lbt13.html b/development/tables/lab-results/lbt13.html index e150615b2..04d06fe25 100644 --- a/development/tables/lab-results/lbt13.html +++ b/development/tables/lab-results/lbt13.html @@ -1471,7 +1471,7 @@

Output

@@ -1564,7 +1564,7 @@ result
-
                                                                           
+
Parameter Code                                                             
   Visit                                                                    
     NCI CTCAE Grade at Visit      A: Drug X    B: Placebo    C: Combination
       Baseline NCI CTCAE Grade     (N=134)       (N=134)        (N=132)    
@@ -1702,7 +1702,7 @@
@@ -1788,7 +1788,7 @@ result
-
                                                                          
+
Parameter Code                                                            
   Visit                                                                   
     NCI CTCAE Grade at Visit     A: Drug X    B: Placebo    C: Combination
       Baseline NCI CTCAE Grade    (N=134)       (N=134)        (N=132)    
@@ -1929,7 +1929,7 @@
@@ -2015,7 +2015,7 @@ result
-
                                                                           
+
Parameter Code                                                             
   Visit                                                                    
     NCI CTCAE Grade at Visit      A: Drug X    B: Placebo    C: Combination
       Baseline NCI CTCAE Grade     (N=134)       (N=134)        (N=132)    
@@ -2153,7 +2153,7 @@
@@ -2238,7 +2238,7 @@ result
-
                                                                          
+
Parameter Code                                                            
   Visit                                                                   
     NCI CTCAE Grade at Visit     A: Drug X    B: Placebo    C: Combination
       Baseline NCI CTCAE Grade    (N=134)       (N=134)        (N=132)    
@@ -2379,7 +2379,7 @@
@@ -2467,7 +2467,7 @@ result
-
                                                                          
+
Parameter Code                                                            
   Visit                                                                   
     NCI CTCAE Grade at Visit     A: Drug X    B: Placebo    C: Combination
       Baseline NCI CTCAE Grade    (N=134)       (N=134)        (N=132)    
@@ -2713,7 +2713,7 @@
@@ -2915,7 +2915,7 @@

Timestamp

-
[1] "2024-11-27 17:57:25 UTC"
+
[1] "2024-11-30 17:53:26 UTC"

Session Info

@@ -2931,7 +2931,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2959,7 +2959,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2971,7 +2971,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2983,23 +2983,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -3014,17 +3014,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -3056,9 +3056,9 @@
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fe0fe62a2..6d51ddd38 100644 --- a/development/tables/lab-results/lbt14.html +++ b/development/tables/lab-results/lbt14.html @@ -1471,7 +1471,7 @@

Output

@@ -1545,7 +1545,7 @@ result
-
                                                                                      
+
Parameter                                                                             
       Baseline NCI-CTCAE Grade                A: Drug X    B: Placebo   C: Combination
               Post-baseline NCI-CTCAE Grade    (N=134)      (N=134)        (N=132)    
 ——————————————————————————————————————————————————————————————————————————————————————
@@ -1632,7 +1632,7 @@
@@ -1699,7 +1699,7 @@ result
-
                                                                                      
+
Parameter                                                                             
       Baseline NCI-CTCAE Grade                A: Drug X    B: Placebo   C: Combination
               Post-baseline NCI-CTCAE Grade    (N=134)      (N=134)        (N=132)    
 ——————————————————————————————————————————————————————————————————————————————————————
@@ -1786,7 +1786,7 @@
@@ -1853,7 +1853,7 @@ result
-
                                                                                      
+
Parameter                                                                             
       Baseline NCI-CTCAE Grade                A: Drug X    B: Placebo   C: Combination
               Post-baseline NCI-CTCAE Grade    (N=134)      (N=134)        (N=132)    
 ——————————————————————————————————————————————————————————————————————————————————————
@@ -1940,7 +1940,7 @@
@@ -2006,7 +2006,7 @@ result
-
                                                                                      
+
Parameter                                                                             
       Baseline NCI-CTCAE Grade                A: Drug X    B: Placebo   C: Combination
               Post-baseline NCI-CTCAE Grade    (N=134)      (N=134)        (N=132)    
 ——————————————————————————————————————————————————————————————————————————————————————
@@ -2093,7 +2093,7 @@
@@ -2159,7 +2159,7 @@ result
-
                                                                                      
+
Parameter                                                                             
       Baseline NCI-CTCAE Grade                A: Drug X    B: Placebo   C: Combination
               Post-baseline NCI-CTCAE Grade    (N=134)      (N=134)        (N=132)    
 ——————————————————————————————————————————————————————————————————————————————————————
@@ -2317,7 +2317,7 @@
@@ -2519,7 +2519,7 @@

Timestamp

-
[1] "2024-11-27 17:58:37 UTC"
+
[1] "2024-11-30 17:54:38 UTC"

Session Info

@@ -2535,7 +2535,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2563,7 +2563,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2575,7 +2575,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2587,23 +2587,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2618,17 +2618,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2662,7 +2662,7 @@
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Output

@@ -1517,7 +1517,7 @@ result <- build_table(lyt, adlb, alt_counts_df = adsl) result
-
                                                                                                           
+
Category for Lab Test                                                                                      
   Parameter                                A: Drug X        B: Placebo     C: Combination    All Patients  
             Direction of Abnormality        (N=134)          (N=134)          (N=132)           (N=400)    
 ———————————————————————————————————————————————————————————————————————————————————————————————————————————
@@ -1557,7 +1557,7 @@
@@ -1576,7 +1576,7 @@
Code
result <- build_table(lyt, adlb_alt_cut, alt_counts_df = adsl)
 result
-
                                                                                                           
+
Category for Lab Test                                                                                      
   Parameter                                A: Drug X        B: Placebo     C: Combination    All Patients  
             Direction of Abnormality        (N=134)          (N=134)          (N=132)           (N=400)    
 ———————————————————————————————————————————————————————————————————————————————————————————————————————————
@@ -1616,7 +1616,7 @@
@@ -1876,7 +1876,7 @@

Timestamp

-
[1] "2024-11-27 17:54:50 UTC"
+
[1] "2024-11-30 17:50:50 UTC"

Session Info

@@ -1892,7 +1892,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1920,7 +1920,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats * 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1932,7 +1932,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1944,23 +1944,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1975,17 +1975,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2017,9 +2017,9 @@
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Output

@@ -1575,7 +1575,7 @@ @@ -1633,7 +1633,7 @@ @@ -1725,7 +1725,7 @@ @@ -1832,7 +1832,7 @@ @@ -2012,7 +2012,7 @@

Timestamp

-
[1] "2024-11-27 17:59:08 UTC"
+
[1] "2024-11-30 17:55:09 UTC"

Session Info

@@ -2028,7 +2028,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2056,7 +2056,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2068,7 +2068,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2080,23 +2080,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2111,17 +2111,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2153,9 +2153,9 @@
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Output

@@ -1521,7 +1521,7 @@ Treatment: A: Drug X —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - Number +Treatment Group Number Visit of Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— @@ -1617,7 +1617,7 @@ Treatment: A: Drug X —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - Number +Treatment Group Number Visit of Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— @@ -1714,7 +1714,7 @@ Treatment: A: Drug X —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - Number +Treatment Group Number Visit of Nominal Time (hr) / Timepoint n LTRs/BLQs Mean SD CV (%) Mean Geometric Mean CV % Geometric Mean Median Minimum Maximum —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— @@ -1821,7 +1821,7 @@

Timestamp

-
[1] "2024-11-27 18:09:21 UTC"
+
[1] "2024-11-30 18:05:19 UTC"

Session Info

@@ -1837,7 +1837,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1855,7 +1855,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1869,7 +1869,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1877,12 +1877,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1890,7 +1890,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1916,9 +1916,9 @@
diff --git a/development/tables/pharmacokinetic/pkpt02.html b/development/tables/pharmacokinetic/pkpt02.html index dfdacc614..c8cdb105f 100644 --- a/development/tables/pharmacokinetic/pkpt02.html +++ b/development/tables/pharmacokinetic/pkpt02.html @@ -1465,7 +1465,7 @@

Output

@@ -1580,7 +1580,7 @@ @@ -1662,7 +1662,7 @@ @@ -1686,7 +1686,7 @@

Timestamp

-
[1] "2024-11-27 18:09:41 UTC"
+
[1] "2024-11-30 18:05:39 UTC"

Session Info

@@ -1702,7 +1702,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1720,7 +1720,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1734,7 +1734,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1742,12 +1742,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1755,7 +1755,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1780,9 +1780,9 @@
diff --git a/development/tables/pharmacokinetic/pkpt03.html b/development/tables/pharmacokinetic/pkpt03.html index 049d36d2f..b21e080c0 100644 --- a/development/tables/pharmacokinetic/pkpt03.html +++ b/development/tables/pharmacokinetic/pkpt03.html @@ -1465,7 +1465,7 @@

Output

@@ -1554,7 +1554,7 @@ Visit: CYCLE 1 DAY 1 —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM A (N=134) @@ -1574,7 +1574,7 @@ Visit: CYCLE 1 DAY 2 ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM A (N=134) @@ -1610,7 +1610,7 @@ @@ -1641,7 +1641,7 @@ Visit: CYCLE 1 DAY 1 —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM A (N=134) @@ -1660,7 +1660,7 @@ Visit: CYCLE 1 DAY 2 ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM A (N=134) @@ -1696,7 +1696,7 @@ @@ -1725,7 +1725,7 @@ Visit: CYCLE 1 DAY 1 —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM C (N=132) @@ -1741,7 +1741,7 @@ Visit: CYCLE 1 DAY 2 —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum —————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM C (N=132) @@ -1773,7 +1773,7 @@ @@ -1847,7 +1847,7 @@

Timestamp

-
[1] "2024-11-27 18:09:34 UTC"
+
[1] "2024-11-30 18:05:32 UTC"

Session Info

@@ -1863,7 +1863,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1881,7 +1881,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1895,7 +1895,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1903,12 +1903,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1916,7 +1916,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1942,9 +1942,9 @@
diff --git a/development/tables/pharmacokinetic/pkpt04.html b/development/tables/pharmacokinetic/pkpt04.html index bd49bf9c9..657015db5 100644 --- a/development/tables/pharmacokinetic/pkpt04.html +++ b/development/tables/pharmacokinetic/pkpt04.html @@ -1465,7 +1465,7 @@

Output

@@ -1588,7 +1588,7 @@ @@ -1678,7 +1678,7 @@ @@ -1702,7 +1702,7 @@

Timestamp

-
[1] "2024-11-27 18:09:12 UTC"
+
[1] "2024-11-30 18:05:10 UTC"

Session Info

@@ -1718,7 +1718,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1736,7 +1736,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1750,7 +1750,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1758,12 +1758,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1771,7 +1771,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1796,9 +1796,9 @@
diff --git a/development/tables/pharmacokinetic/pkpt05.html b/development/tables/pharmacokinetic/pkpt05.html index 1779cd105..8252e120f 100644 --- a/development/tables/pharmacokinetic/pkpt05.html +++ b/development/tables/pharmacokinetic/pkpt05.html @@ -1465,7 +1465,7 @@

Output

@@ -1548,7 +1548,7 @@ Visit: CYCLE 1 DAY 1 ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM A @@ -1586,7 +1586,7 @@ @@ -1617,7 +1617,7 @@ Visit: CYCLE 1 DAY 1 ———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum ———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM C @@ -1650,7 +1650,7 @@ @@ -1674,7 +1674,7 @@

Timestamp

-
[1] "2024-11-27 18:08:44 UTC"
+
[1] "2024-11-30 18:04:43 UTC"

Session Info

@@ -1690,7 +1690,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1708,7 +1708,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1722,7 +1722,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1730,12 +1730,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1743,7 +1743,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1770,7 +1770,7 @@
diff --git a/development/tables/pharmacokinetic/pkpt06.html b/development/tables/pharmacokinetic/pkpt06.html index 59281e099..6c1442b09 100644 --- a/development/tables/pharmacokinetic/pkpt06.html +++ b/development/tables/pharmacokinetic/pkpt06.html @@ -1465,7 +1465,7 @@

Output

@@ -1564,7 +1564,7 @@ @@ -1630,7 +1630,7 @@ @@ -1656,7 +1656,7 @@

Timestamp

-
[1] "2024-11-27 18:08:58 UTC"
+
[1] "2024-11-30 18:04:56 UTC"

Session Info

@@ -1672,7 +1672,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1690,7 +1690,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1704,7 +1704,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1712,12 +1712,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1725,7 +1725,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1750,9 +1750,9 @@
diff --git a/development/tables/pharmacokinetic/pkpt07.html b/development/tables/pharmacokinetic/pkpt07.html index 6a2389842..9eefe0f89 100644 --- a/development/tables/pharmacokinetic/pkpt07.html +++ b/development/tables/pharmacokinetic/pkpt07.html @@ -1465,7 +1465,7 @@

Output

@@ -1548,7 +1548,7 @@ Visit: CYCLE 1 DAY 1 ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum ————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM A @@ -1580,7 +1580,7 @@ @@ -1611,7 +1611,7 @@ Visit: CYCLE 1 DAY 1 ———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +Treatment Arm PK Parameter n Mean SD CV (%) Geometric Mean CV % Geometric Mean Median Minimum Maximum ———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— ARM C @@ -1641,7 +1641,7 @@ @@ -1667,7 +1667,7 @@

Timestamp

-
[1] "2024-11-27 18:09:05 UTC"
+
[1] "2024-11-30 18:05:03 UTC"

Session Info

@@ -1683,7 +1683,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1701,7 +1701,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1715,7 +1715,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1723,12 +1723,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1736,7 +1736,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1761,9 +1761,9 @@
diff --git a/development/tables/pharmacokinetic/pkpt08.html b/development/tables/pharmacokinetic/pkpt08.html index 8a6dfb6c0..642df65fd 100644 --- a/development/tables/pharmacokinetic/pkpt08.html +++ b/development/tables/pharmacokinetic/pkpt08.html @@ -1465,7 +1465,7 @@

Output

@@ -1592,7 +1592,7 @@ @@ -1618,7 +1618,7 @@

Timestamp

-
[1] "2024-11-27 18:08:37 UTC"
+
[1] "2024-11-30 18:04:35 UTC"

Session Info

@@ -1634,7 +1634,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1652,7 +1652,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1666,7 +1666,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1674,12 +1674,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1687,7 +1687,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1714,7 +1714,7 @@
diff --git a/development/tables/pharmacokinetic/pkpt11.html b/development/tables/pharmacokinetic/pkpt11.html index fd81d8fc3..a5870f94b 100644 --- a/development/tables/pharmacokinetic/pkpt11.html +++ b/development/tables/pharmacokinetic/pkpt11.html @@ -1465,7 +1465,7 @@

Output

@@ -1533,7 +1533,7 @@ Analyte: Plasma Drug X ——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— - +PK Parameter Comparison n Geometric Mean Ratio 90% CI Lower Bound 90% CI Upper Bound ——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————— AUCinf obs (day*ug/mL) @@ -1565,7 +1565,7 @@ @@ -1677,7 +1677,7 @@

Timestamp

-
[1] "2024-11-27 18:08:51 UTC"
+
[1] "2024-11-30 18:04:50 UTC"

Session Info

@@ -1693,7 +1693,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1711,7 +1711,7 @@ evaluate 1.0.1 2024-10-10 [1] RSPM fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -1725,7 +1725,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -1733,12 +1733,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -1746,7 +1746,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -1771,9 +1771,9 @@
diff --git a/development/tables/risk-management-plan/rmpt01.html b/development/tables/risk-management-plan/rmpt01.html index 6484257f1..ba892030c 100644 --- a/development/tables/risk-management-plan/rmpt01.html +++ b/development/tables/risk-management-plan/rmpt01.html @@ -1471,7 +1471,7 @@

Output

@@ -1548,7 +1548,7 @@ @@ -1805,7 +1805,7 @@

Timestamp

-
[1] "2024-11-27 17:52:29 UTC"
+
[1] "2024-11-30 17:48:28 UTC"

Session Info

@@ -1821,7 +1821,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1849,7 +1849,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1861,7 +1861,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1873,23 +1873,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1904,17 +1904,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1946,9 +1946,9 @@
diff --git a/development/tables/risk-management-plan/rmpt01_files/figure-html/teal-1.png b/development/tables/risk-management-plan/rmpt01_files/figure-html/teal-1.png index 945111520ff0696270beec0df5600133270ff0cf..cbf7704ad30e3c7651c0c4570093d1335c7ae99e 100644 GIT binary patch delta 2531 zcmbVOdpOg58?V$;p-3pwLZX-vGlv%CkPf1goW?w*NmwPCDf>MYQK~)cLC$Z)LME2O zrWwiEc(hoH5ehRybBfKpKl)O5YfE4&rAhmdw)$_44k>GLakne`>QD{N{s*S#Lwf2x5BKulY`sEy+VJL;;!X>5#<^<`)_HTDy?38nlH5qZaEDPESsfF4 zcxwWkHs5=z!*ZTnEvhCTv&XDmvm#Go+t#gofi*j~rEFNy));4Ji)r|P06t^BZ#sfu zyXiE$7mKsAd%)&P2IGuwPxN|#auvTg!w(a5A6}YaN1HC(mA0jrmbj1eaQ%ibn5wPh zN8_H(t1}HxchM;}(`}|@Wo4&Mor*uMlX#L(myYHTySutJYYqMg2LL8TkedtSvREwD zxGNaU@TdIqbV^T9`S9>?LW0slY-eZZ^hk%C76nBcykXIXp*9ZjM@K91vIPa1hj0^J zZfHhUSS5FCY^1uPeP(Q3WX#{Dv{lA;o_`d^4+wvE{QJ?w0;kH zoITE^jtqBI9l~Emq?Ne?P(wpQ2+_Z2cr_h0GNI^{XvOzI2AO9N9VJT3}$+ zz8#f0wY5i!IRgG3p=4%dEq^1qfCj)KUys?}-`7`7r$>Biicd{dFXr4C z{P1XQZcZc;)z;RABO#mCFD@>A>FH^0X*qW6*u#epQ-Rb}znB+i_AAS7*6IV6m%6*V zL2GgPIAiDT-Cc0u-!JS83=ABfX>d!gvVV3#E)>l#WQHMQPlIaG^%IOl`B_lV;lDXk|Cl^wOBJICI%1-&8gfVDpy@y zU3O$yGTmXsl$7S=khhpX_7U#s?o|c_mdf56Unp(Rl$oV5nCG1^Vf!00-GT@0o>7R z_7na5G4we5ov6hinzZNc)KNqlkLpik^WTN?6Ihrydu=&6IqR(A>T2m&SK-zeyYf&A z4bXQs93b)A#i0_Zcyfo4&)ub24hwS&0G1b~N0taoMePjdEQ_1jWo2P?54Y6S)$KwA zeP*sS4#-?w*$r1mWpOM=si}UP1p*@oU^X3a?vUv z_yy(q$@z}9wl)^4ti0SRqx~w}%E}5@1cyU2qQo7lEUTiTQbeJE=_u^d?>Lmv9)vh# zW){|Z90?(E1i?W;fANV01x> zA0H`LQgs7w#?h`_C>Xh*K=BeDkH2}d!J3UfoXlSU}4-nPdlhGxe zm>3MG=qb8bD385g>kC(Bh^=H+0-9PLWd1~xt+R|EL;;;J)Ud?^su|UUp>m4R%sLCF zyvb_uL^7HXul4@p$AlhXW@hHI`b!};vG&>n(+eO)XkaO^+0ReyJ-87ft^3Euu9>7L z+dg^vbi;$%D*60Up!A%pD{UmVpg_d5)YsSd2_M)%W?LeW&?vC)=r;!Lx9!O89PKJ} zoBW)Z9@{Z;ip(~Ft7&MYKY#u_BV!3%HwqdSXEs5!7u zW8?RYP}R74;q89w1Sj305So)NdvNfQc6`&wbbWojiVC2@lr9GTepD(H{8|9+-60C? zUQLFURdl+>R!2OZ20b_`6efDP-NxbksoccG#2iQBm!NWx^`xXElAcSZb)+X}wxQuz zVVC;Wn7#2$F?$HF0z89*g?0*ub)r63;jX*5xL9Y+ha)?z#jmsXgBwpqMkY0nE1XLP zd?NTTy8;R&iHJyXf+Yuv=Y)^!ZGFB}Tt~aPafVrGxbe>ijg6=HR^L{c$1L;_F5?cWnJc?EINV2Yji3E+;R2F62tQ9#`CXqb_a5ezmvEPHFbaeKD&1lc3RP-&3t8>FwWG}ho75YU9~FW+2W z#>T{;f`T3@o(;TlQ(9VDLqkJR5l|Egg-!KgVmjQH=mv+>Qk=`U-QAu$x_Wv|ajSuW zfwQmtCP?9emGy3@%li84*2>CC3WUvOudS^el1BuGhx<1rCt)z3QV$*f zyf|FekG9Jhc=v8Xc>81QrV90&>OXIcc1&H4jEr=0au> zHVhUx-$S4VG*O5|Nf{ZHlfcPO8;QBOxq&oOulCxo;U~tA3ksA`!`Am&TU!~}S}9idwSgNGF2Viu3nuKtqGi9y{~$v zrl-qX3jMvjzNGEk6st?@Q{f_@4)H60zQxJd)ZZ4e=2mBb+1VenFjH@&G-&oNE-FUo zCy*)bk@TX0fdLlFI>VNBv-ics#AHj_rby&L_CZy86<7k{hDu0XPdht18yg!RpFDpm z@Ye+MedYC2N7}F^{GOhkk&${7S03-|>E`C<=~-roz+kc9Jj6}6W`GZgNK`NhANf`K z#0_u2B6{|>wrL)^hD;`dJb?0pa|ueNt*yQ_}4La(VHy4(_ z-=(2>d=7gy-AXm$)YY`EzXtdry@QlVY z2&uj-c9pfil&6*Q)Bwc+=eN)zX<>a6%qMuthxvJJEv*PMJTu6! zu~OC{>xpHeMF1!-C{Fnyv*;+s+B_)B0_88{WgRVIn)KyVl z?$&Cg)QQ7o_|dAWdL|>Z@Jf-9K%|U{#mQXntYs0A zHAer4oVImw>Gs6A9hBO?7xeMM(vpX=xvQDc6L$9XbMXlYWDh~RQJC?wLBY>aveZFR zeFExfp^o$}^>>;&3eE3EE6mt;O}9OK);ZhWZckuNanUc9L3oUgBx z0la?wT2WDPkQ$%|hd)Nejn>707I^vcr7lkJfmfOZ)quftsFL0d@iDHhuBwn%KIF?e zh>e#&fcdKvK<-DkWuAJLpZ{?!KKmgUVbS2J@5^d-;m@xR)r6Eer=ZH}WexrT_o{ diff --git a/development/tables/risk-management-plan/rmpt03.html b/development/tables/risk-management-plan/rmpt03.html index 77c6e324a..9a36ac986 100644 --- a/development/tables/risk-management-plan/rmpt03.html +++ b/development/tables/risk-management-plan/rmpt03.html @@ -1471,7 +1471,7 @@

Output

@@ -1547,7 +1547,7 @@ @@ -1621,7 +1621,7 @@ @@ -1913,7 +1913,7 @@

Timestamp

-
[1] "2024-11-27 17:52:59 UTC"
+
[1] "2024-11-30 17:48:58 UTC"

Session Info

@@ -1929,7 +1929,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1957,7 +1957,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1969,7 +1969,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1981,23 +1981,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2012,17 +2012,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2054,9 +2054,9 @@
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Output

@@ -1545,7 +1545,7 @@ @@ -1778,7 +1778,7 @@

Timestamp

-
[1] "2024-11-27 17:53:21 UTC"
+
[1] "2024-11-30 17:49:19 UTC"

Session Info

@@ -1794,7 +1794,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1822,7 +1822,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1834,7 +1834,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1846,23 +1846,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1877,17 +1877,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1919,9 +1919,9 @@
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Output

@@ -1551,7 +1551,7 @@ @@ -1784,7 +1784,7 @@

Timestamp

-
[1] "2024-11-27 17:53:42 UTC"
+
[1] "2024-11-30 17:49:40 UTC"

Session Info

@@ -1800,7 +1800,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1828,7 +1828,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1840,7 +1840,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1852,23 +1852,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1883,17 +1883,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1927,7 +1927,7 @@
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Output

@@ -1585,7 +1585,7 @@
@@ -1685,7 +1685,7 @@ @@ -1809,7 +1809,7 @@ @@ -1936,7 +1936,7 @@ @@ -2011,7 +2011,7 @@

Timestamp

-
[1] "2024-11-27 17:52:42 UTC"
+
[1] "2024-11-30 17:48:41 UTC"

Session Info

@@ -2027,7 +2027,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2046,7 +2046,7 @@ fansi 1.0.6 2023-12-08 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM @@ -2060,7 +2060,7 @@ magrittr * 2.0.3 2022-03-30 [1] RSPM Matrix 1.7-1 2024-10-18 [1] RSPM munsell 0.5.1 2024-04-01 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM @@ -2068,12 +2068,12 @@ ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ scales 1.3.0 2023-11-28 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] any (@1.2.2) stringi 1.8.4 2024-05-06 [1] RSPM @@ -2081,7 +2081,7 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - tern * 0.9.6.9016 2024-11-27 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM tibble 3.2.1 2023-03-20 [1] RSPM tidyr 1.3.1 2024-01-24 [1] RSPM @@ -2106,9 +2106,9 @@
diff --git a/development/tables/safety/enrollment01.html b/development/tables/safety/enrollment01.html index 2c487dd09..cfdf4bf92 100644 --- a/development/tables/safety/enrollment01.html +++ b/development/tables/safety/enrollment01.html @@ -1471,7 +1471,7 @@

Output

@@ -1511,7 +1511,7 @@ result
-
                                                                                     
+
Geographic Region 1                                                                  
   Country                     A: Drug X    B: Placebo   C: Combination   All Patients
     Investigator Identifier    (N=134)      (N=134)        (N=132)         (N=400)   
 —————————————————————————————————————————————————————————————————————————————————————
@@ -1650,7 +1650,7 @@
@@ -1811,7 +1811,7 @@ @@ -1842,7 +1842,7 @@ result
-
                                                                                            
+
Geographic Region 1                                                                         
   Country                            A: Drug X    B: Placebo   C: Combination   All Patients
     Investigator Number/Name          (N=134)      (N=134)        (N=132)         (N=400)   
 ————————————————————————————————————————————————————————————————————————————————————————————
@@ -1981,7 +1981,7 @@
@@ -2142,7 +2142,7 @@ @@ -2383,7 +2383,7 @@

Timestamp

-
[1] "2024-11-27 17:59:42 UTC"
+
[1] "2024-11-30 17:55:44 UTC"

Session Info

@@ -2399,7 +2399,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -2427,7 +2427,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats * 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -2439,7 +2439,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -2451,23 +2451,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2482,17 +2482,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2524,9 +2524,9 @@
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Output

@@ -1609,7 +1609,7 @@
@@ -1922,7 +1922,7 @@

Timestamp

-
[1] "2024-11-27 17:51:22 UTC"
+
[1] "2024-11-30 17:47:20 UTC"

Session Info

@@ -1938,7 +1938,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1967,7 +1967,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1980,7 +1980,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.4 2023-11-07 [1] RSPM @@ -1993,24 +1993,24 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM plotly 4.10.4 2024-01-13 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -2025,17 +2025,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -2068,9 +2068,9 @@
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Output

@@ -1552,7 +1552,7 @@
@@ -1629,7 +1629,7 @@ @@ -1821,7 +1821,7 @@

Timestamp

-
[1] "2024-11-27 17:51:00 UTC"
+
[1] "2024-11-30 17:46:58 UTC"

Session Info

@@ -1837,7 +1837,7 @@ collate en_US.UTF-8 ctype en_US.UTF-8 tz Etc/UTC - date 2024-11-27 + date 2024-11-30 pandoc 3.4 @ /usr/bin/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────── @@ -1865,7 +1865,7 @@ fontawesome 0.5.3 2024-11-16 [1] RSPM forcats 1.0.0 2023-01-29 [1] RSPM formatR 1.14 2023-01-17 [1] CRAN (R 4.4.1) - formatters * 0.5.9.9005 2024-11-27 [1] https://p~ + formatters * 0.5.9.9006 2024-11-30 [1] https://p~ geepack 1.3.12 2024-09-23 [1] RSPM generics 0.1.3 2022-07-05 [1] RSPM ggplot2 3.5.1 2024-04-23 [1] RSPM @@ -1877,7 +1877,7 @@ jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 1.8.9 2024-09-20 [1] RSPM knitr 1.49 2024-11-08 [1] RSPM - later 1.4.0 2024-11-26 [1] RSPM + later 1.4.1 2024-11-27 [1] RSPM lattice 0.22-6 2024-03-20 [2] CRAN (R 4.4.1) lifecycle 1.0.4 2023-11-07 [1] RSPM logger 0.4.0 2024-10-22 [1] RSPM @@ -1889,23 +1889,23 @@ multcomp 1.4-26 2024-07-18 [1] CRAN (R 4.4.1) munsell 0.5.1 2024-04-01 [1] RSPM mvtnorm 1.3-2 2024-11-04 [1] RSPM - nestcolor 0.1.2.9017 2024-11-27 [1] https://p~ + nestcolor 0.1.2.9017 2024-11-30 [1] https://p~ nlme 3.1-166 2024-08-14 [2] CRAN (R 4.4.1) pillar 1.9.0 2023-03-22 [1] RSPM pkgcache 2.2.3 2024-09-12 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM processx 3.8.4 2024-03-16 [1] RSPM - promises 1.3.1 2024-11-26 [1] RSPM + promises 1.3.2 2024-11-28 [1] RSPM ps 1.8.1 2024-10-28 [1] RSPM purrr 1.0.2 2023-08-10 [1] RSPM R6 2.5.1 2021-08-19 [1] RSPM - random.cdisc.data 0.3.16.9001 2024-11-27 [1] https://p~ + random.cdisc.data 0.3.16.9001 2024-11-30 [1] https://p~ rbibutils 2.3 2024-10-04 [1] RSPM Rcpp 1.0.13-1 2024-11-02 [1] RSPM Rdpack 2.6.2 2024-11-15 [1] RSPM rlang 1.1.4 2024-06-04 [1] RSPM rmarkdown 2.29 2024-11-04 [1] RSPM - rtables * 0.6.10.9007 2024-11-27 [1] https://p~ + rtables * 0.6.10.9008 2024-11-30 [1] https://p~ sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.4.1) sass 0.4.9 2024-03-15 [1] RSPM scales 1.3.0 2023-11-28 [1] RSPM @@ -1920,17 +1920,17 @@ survival 3.7-0 2024-06-05 [2] CRAN (R 4.4.1) svglite 2.1.3 2023-12-08 [1] RSPM systemfonts 1.1.0 2024-05-15 [1] RSPM - teal * 0.15.2.9090 2024-11-27 [1] https://p~ - teal.code * 0.5.0.9019 2024-11-27 [1] https://p~ - teal.data * 0.6.0.9021 2024-11-27 [1] https://p~ - teal.logger 0.3.0.9002 2024-11-27 [1] https://p~ - teal.modules.clinical * 0.9.1.9035 2024-11-27 [1] https://p~ - teal.reporter 0.3.1.9018 2024-11-27 [1] https://p~ - teal.slice * 0.5.1.9016 2024-11-27 [1] https://p~ - teal.transform * 0.5.0.9016 2024-11-27 [1] https://p~ - teal.widgets 0.4.2.9024 2024-11-27 [1] https://p~ - tern * 0.9.6.9016 2024-11-27 [1] https://p~ - tern.gee 0.1.5.9004 2024-11-27 [1] https://p~ + teal * 0.15.2.9091 2024-11-30 [1] https://p~ + teal.code * 0.5.0.9020 2024-11-30 [1] https://p~ + teal.data * 0.6.0.9021 2024-11-30 [1] https://p~ + teal.logger 0.3.0.9002 2024-11-30 [1] https://p~ + teal.modules.clinical * 0.9.1.9036 2024-11-30 [1] https://p~ + teal.reporter 0.3.1.9018 2024-11-30 [1] https://p~ + teal.slice * 0.5.1.9016 2024-11-30 [1] https://p~ + teal.transform * 0.5.0.9016 2024-11-30 [1] https://p~ + teal.widgets 0.4.2.9024 2024-11-30 [1] https://p~ + tern * 0.9.6.9016 2024-11-30 [1] https://p~ + tern.gee 0.1.5.9004 2024-11-30 [1] https://p~ testthat 3.2.1.1 2024-04-14 [1] RSPM TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.4.1) tibble 3.2.1 2023-03-20 [1] RSPM @@ -1962,9 +1962,9 @@
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