Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[Bug]: incidence rate when zero events in one group #1360

Open
3 tasks done
lchensigma opened this issue Dec 10, 2024 · 0 comments
Open
3 tasks done

[Bug]: incidence rate when zero events in one group #1360

lchensigma opened this issue Dec 10, 2024 · 0 comments
Labels
bug Something isn't working

Comments

@lchensigma
Copy link

lchensigma commented Dec 10, 2024

What happened?

A bug happened!
when zero events in one group, CI of the incidence, incidence ratio, CI and P value are not correct with estimate_incidence_rate and summarize_glm_count.

sessionInfo()

R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 26100)

Matrix products: default


locale:
[1] LC_COLLATE=English_United States.utf8  LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

time zone: America/Los_Angeles
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] tern.mmrm_0.3.2     scda_0.1.6          tern_0.9.6          haven_2.5.4         rtables_0.6.10     
 [6] magrittr_2.0.3      formatters_0.5.9    rstan_2.32.6        StanHeaders_2.32.10 tidybayes_3.0.7    
[11] bayesplot_1.11.1    brms_2.22.0         Rcpp_1.0.13-1       dreamer_3.1.0       DoseFinding_1.2-1  
[16] labelled_2.13.0     gt_0.11.1           flextable_0.9.7     broom_1.0.7         readxl_1.4.3       
[21] boxr_0.3.6          pander_0.6.5        patchwork_1.3.0     ggprism_1.0.5       gtsummary_2.0.3    
[26] ggthemes_5.1.0      knitr_1.49          lubridate_1.9.3     forcats_1.0.0       stringr_1.5.1      
[31] dplyr_1.1.4         purrr_1.0.2         readr_2.1.5         tidyr_1.3.1         tibble_3.2.1       
[36] ggplot2_3.5.1       tidyverse_2.0.0    

loaded via a namespace (and not attached):
  [1] svUnit_1.0.6            shinythemes_1.2.0       splines_4.3.1           later_1.3.2            
  [5] cellranger_1.1.0        xts_0.14.1              forestplot_3.1.5        lifecycle_1.0.4        
  [9] Rdpack_2.6.2            rprojroot_2.0.4         lattice_0.22-6          MASS_7.3-60.0.1        
 [13] crosstalk_1.2.1         ggdist_3.3.2            backports_1.5.0         metafor_4.6-0          
 [17] rmarkdown_2.29          yaml_2.3.10             httpuv_1.6.15           zip_2.3.1              
 [21] askpass_1.2.1           pkgbuild_1.4.5          cowplot_1.1.3           minqa_1.2.8            
 [25] pkgload_1.4.0           multcomp_1.4-26         abind_1.4-8             TH.data_1.1-2          
 [29] tensorA_0.36.2.1        sandwich_3.1-1          gdtools_0.4.1           inline_0.3.20          
 [33] xslt_1.4.6              RBesT_1.7-3             parallelly_1.39.0       bridgesampling_1.1-2   
 [37] codetools_0.2-19        DT_0.33                 xml2_1.3.6              tidyselect_1.2.1       
 [41] rstanarm_2.32.1         farver_2.1.2            lme4_1.1-35.5           matrixStats_1.4.1      
 [45] stats4_4.3.1            base64enc_0.1-3         mathjaxr_1.6-0          jsonlite_1.8.9         
 [49] Formula_1.2-6           emmeans_1.10.5          survival_3.7-0          systemfonts_1.1.0      
 [53] tools_4.3.1             ragg_1.3.3              mmrm_0.3.14             glue_1.8.0             
 [57] gridExtra_2.3           xfun_0.48               here_1.0.1              distributional_0.5.0   
 [61] loo_2.8.0               withr_3.0.2             numDeriv_2016.8-1.1     fastmap_1.2.0          
 [65] boot_1.3-28.1           fansi_1.0.6             shinyjs_2.1.0           openssl_2.2.2          
 [69] digest_0.6.37           estimability_1.5.1      timechange_0.3.0        R6_2.5.1               
 [73] mime_0.12               textshaping_0.4.0       colorspace_2.1-1        gtools_3.9.5           
 [77] markdown_1.13           threejs_0.3.3           utf8_1.2.4              generics_0.1.3         
 [81] fontLiberation_0.1.0    data.table_1.16.2       htmlwidgets_1.6.4       pkgconfig_2.0.3        
 [85] dygraphs_1.1.1.6        gtable_0.3.6            htmltools_0.5.8.1       fontBitstreamVera_0.1.1
 [89] scales_1.3.0            posterior_1.6.0         rstudioapi_0.17.1       tzdb_0.4.0             
 [93] reshape2_1.4.4          uuid_1.2-1              coda_0.19-4.1           checkmate_2.3.2        
 [97] nlme_3.1-166            curl_6.0.1              nloptr_2.1.1            zoo_1.8-12             
[101] parallel_4.3.1          miniUI_0.1.1.1          metadat_1.2-0           pillar_1.9.0           
[105] grid_4.3.1              vctrs_0.6.5             MetaStan_1.0.0          shinystan_2.6.0        
[109] promises_1.3.0          arrayhelpers_1.1-0      xtable_1.8-4            evaluate_1.0.1         
[113] mvtnorm_1.3-2           cli_3.6.3               compiler_4.3.1          rlang_1.1.4            
[117] rstantools_2.4.0        plyr_1.8.9              stringi_1.8.4           QuickJSR_1.4.0         
[121] assertthat_0.2.1        HDInterval_0.2.4        munsell_0.5.1           colourpicker_1.3.0     
[125] Brobdingnag_1.2-9       V8_6.0.0                fontquiver_0.2.1        Matrix_1.6-5           
[129] hms_1.1.3               shiny_1.9.1             rbibutils_2.3           igraph_2.1.1           
[133] RcppParallel_5.1.9      katex_1.5.0             equatags_0.2.1          officer_0.6.7

Relevant log output

Code of Conduct

  • I agree to follow this project's Code of Conduct.

Contribution Guidelines

  • I agree to follow this project's Contribution Guidelines.

Security Policy

  • I agree to follow this project's Security Policy.
@lchensigma lchensigma added the bug Something isn't working label Dec 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

1 participant