diff --git a/DESCRIPTION b/DESCRIPTION index f3f171c665..6cf489afb3 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Type: Package Package: teal Title: Exploratory Web Apps for Analyzing Clinical Trials Data -Version: 0.10.0.9056.10 -Date: 2021-10-13 +Version: 0.10.1 +Date: 2022-01-27 Authors@R: c( person("NEST", , , "basel.nestcicd@roche.com", role = c("aut", "cre")), person("Adrian", "Waddell", , "adrian.waddell@roche.com", role = "aut"), @@ -33,13 +33,13 @@ Imports: glue, grDevices, lifecycle, - logger, + logger (>= 0.2.0), magrittr, methods, MultiAssayExperiment, R6, rlang, - rtables (>= 0.3.8), + rtables (>= 0.4.0.2.1), shinyjs, shinyWidgets (>= 0.5.0), stats, @@ -54,8 +54,8 @@ Suggests: readr, reticulate, rmarkdown, - scda, - scda.2021, + scda (>= 0.1.2), + scda.2021 (>= 0.1.2), testthat (>= 2.0), withr VignetteBuilder: diff --git a/NEWS.md b/NEWS.md index 9fd1c6262b..d9816daaa2 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# teal 0.10.0.9056.10 +# teal 0.10.1 ### Breaking changes * Changed the `HTML` identifiers of `teal` modules - now each nested module receives its own `shiny` namespace. diff --git a/_pkgdown.yml b/_pkgdown.yml index 5e83b15240..8970c65910 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -1,3 +1,4 @@ +--- url: https://insightsengineering.github.io/teal template: @@ -11,170 +12,174 @@ navbar: reference: - title: Teal Core Functions - desc: These are the main functions needed to build a teal app. + desc: These are the main functions needed to build a teal app. contents: - - bookmarkableShinyApp - - init - - module - - modules - - root_modules - - srv_teal_with_splash - - ui_teal_with_splash + - bookmarkableShinyApp + - init + - module + - modules + - root_modules + - srv_teal_with_splash + - ui_teal_with_splash - title: Teal Filtering and Selecting - desc: Functions used to filter observations and select variables from dataset. + desc: >- + Functions used to filter observations + and select variables from dataset. contents: - - add_no_selected_choices - - all_choices - - choices_labeled - - choices_selected - - data_extract_spec - - filter_spec - - get_variable_labels - - select_spec - - value_choices - - variable_choices + - add_no_selected_choices + - all_choices + - choices_labeled + - choices_selected + - data_extract_spec + - filter_spec + - get_variable_labels + - select_spec + - value_choices + - variable_choices - title: Teal filter-panel API desc: Functions used to modify filter-panel states. contents: - - get_filter_state - - set_filter_state - - remove_filter_state - - clear_filter_states + - get_filter_state + - set_filter_state + - remove_filter_state + - clear_filter_states - title: Teal modules UI - desc: Functions used to filter observations and select variables from dataset. + desc: >- + Functions used to filter observations + and select variables from dataset. contents: - - optionalSelectInput - - optionalSliderInput - - optionalSliderInputValMinMax - - updateOptionalSelectInput + - optionalSelectInput + - optionalSliderInput + - optionalSliderInputValMinMax + - updateOptionalSelectInput - title: Delayed Dataset Constructors desc: For creating delayed dataset objects. contents: - - cdisc_dataset - - cdisc_dataset_file - - dataset - - dataset_file - - mae_dataset + - cdisc_dataset + - cdisc_dataset_file + - dataset + - dataset_file + - mae_dataset - title: Delayed Dataset Connectors Constructors desc: For creating delayed dataset connector objects. contents: - - cdisc_data_connector - - cdisc_dataset_connector - - cdisc_dataset_connector_file - - code_cdisc_dataset_connector - - code_dataset_connector - - csv_cdisc_dataset_connector - - csv_dataset_connector - - data_connection - - dataset_connector - - dataset_connector_file - - fun_cdisc_dataset_connector - - fun_dataset_connector - - python_cdisc_dataset_connector - - python_dataset_connector - - rds_cdisc_dataset_connector - - rds_dataset_connector - - relational_data_connector - - scda_cdisc_dataset_connector - - scda_dataset_connector - - script_cdisc_dataset_connector - - script_dataset_connector + - cdisc_data_connector + - cdisc_dataset_connector + - cdisc_dataset_connector_file + - code_cdisc_dataset_connector + - code_dataset_connector + - csv_cdisc_dataset_connector + - csv_dataset_connector + - data_connection + - dataset_connector + - dataset_connector_file + - fun_cdisc_dataset_connector + - fun_dataset_connector + - python_cdisc_dataset_connector + - python_dataset_connector + - rds_cdisc_dataset_connector + - rds_dataset_connector + - relational_data_connector + - scda_cdisc_dataset_connector + - scda_dataset_connector + - script_cdisc_dataset_connector + - script_dataset_connector - title: Delayed Data Constructors desc: For creating delayed data objects. contents: - - cdisc_data - - cdisc_data_file - - cdse_data - - teal_data - - teal_data_file + - cdisc_data + - cdisc_data_file + - cdse_data + - teal_data + - teal_data_file - title: Delayed Dataset Functions desc: For loading and modifying delayed data objects. contents: - - as_cdisc - - callable_code - - callable_function - - get_attrs - - get_cdisc_keys - - get_code - - get_dataname - - get_dataset - - get_dataset_label - - get_datasets - - get_keys - - get_raw_data - - is_pulled - - load_dataset - - load_datasets - - mutate_data - - mutate_dataset - - mutate_join_keys - - resolve_delayed - - set_args - - set_keys + - as_cdisc + - callable_code + - callable_function + - get_attrs + - get_cdisc_keys + - get_code + - get_dataname + - get_dataset + - get_dataset_label + - get_datasets + - get_keys + - get_raw_data + - is_pulled + - load_dataset + - load_datasets + - mutate_data + - mutate_dataset + - mutate_join_keys + - resolve_delayed + - set_args + - set_keys - title: Helpers desc: Other useful functions for users and developers. contents: - - data_label - - data_label<- - - default_filter - - get_filter_expr - - get_key_duplicates - - get_key_duplicates.data.frame - - get_key_duplicates.TealDataset - - get_labels - - join_key - - join_keys - - log_app_usage - - no_selected_as_NULL - - python_code - - read_script - - split_by_sep + - data_label + - data_label<- + - default_filter + - get_filter_expr + - get_key_duplicates + - get_key_duplicates.data.frame + - get_key_duplicates.TealDataset + - get_labels + - join_key + - join_keys + - log_app_usage + - no_selected_as_NULL + - python_code + - read_script + - split_by_sep - title: For Developers subtitle: R6 Classes desc: Abstract and concrete classes used to build teal functionality. contents: - - CallableCode - - CallablePythonCode - - CDISCTealData - - CDISCTealDataConnector - - CDISCTealDataset - - CDISCTealDatasetConnector - - CDISCFilteredData - - CDISCFilteredDataset - - DefaultFilteredDataset - - FilteredData - - FilteredDataset - - JoinKeys - - MAEFilteredDataset - - MAETealDataset - - PythonCodeClass - - Queue - - TealData - - TealDataConnection - - TealDataConnector - - TealDataset - - TealDatasetConnector + - CallableCode + - CallablePythonCode + - CDISCTealData + - CDISCTealDataConnector + - CDISCTealDataset + - CDISCTealDatasetConnector + - CDISCFilteredData + - CDISCFilteredDataset + - DefaultFilteredDataset + - FilteredData + - FilteredDataset + - JoinKeys + - MAEFilteredDataset + - MAETealDataset + - PythonCodeClass + - Queue + - TealData + - TealDataConnection + - TealDataConnector + - TealDataset + - TealDatasetConnector - title: Logging - subtitle: Support for logging in a `teal` application + desc: Support for logging in a `teal` application contents: - - register_logger + - register_logger - title: Superseded contents: - - cdse_connection - - cdse_dataset_connector - - datasetdb_data - - datasetdb_connection - - datasetdb_dataset_connector - - ricepass_connection - - rice_connection - - rice_cdisc_dataset_connector - - rice_data - - rice_dataset_connector - - snowflake_connection - - snowflake_connection_function - - snowflake_data - - snowflake_dataset_connector - - teradata_cdisc_dataset_connector - - teradata_connection - - teradata_data - - teradata_dataset_connector + - cdse_connection + - cdse_dataset_connector + - datasetdb_data + - datasetdb_connection + - datasetdb_dataset_connector + - ricepass_connection + - rice_connection + - rice_cdisc_dataset_connector + - rice_data + - rice_dataset_connector + - snowflake_connection + - snowflake_connection_function + - snowflake_data + - snowflake_dataset_connector + - teradata_cdisc_dataset_connector + - teradata_connection + - teradata_data + - teradata_dataset_connector