From 518f69e4da50342fd67d1428452fb3e8760db1a3 Mon Sep 17 00:00:00 2001
From: kartikeyakirar <kartikeyakirar@users.noreply.github.com>
Date: Wed, 11 Oct 2023 13:50:45 +0000
Subject: [PATCH] deploy: 3d16439ea447c4a0aee910270aeab6ebe9dc61de

---
 main/coverage-report/index.html                    | 14 +++++++-------
 .../datatables.js                                  |  8 +++++---
 2 files changed, 12 insertions(+), 10 deletions(-)
 rename main/coverage-report/lib/{datatables-binding-0.28 => datatables-binding-0.30}/datatables.js (99%)

diff --git a/main/coverage-report/index.html b/main/coverage-report/index.html
index 34b0f201..c0864abd 100644
--- a/main/coverage-report/index.html
+++ b/main/coverage-report/index.html
@@ -5,7 +5,7 @@
 <style>body{background-color:white;}</style>
 <script src="lib/htmlwidgets-1.6.2/htmlwidgets.js"></script>
 <link href="lib/datatables-css-0.0.0/datatables-crosstalk.css" rel="stylesheet" />
-<script src="lib/datatables-binding-0.28/datatables.js"></script>
+<script src="lib/datatables-binding-0.30/datatables.js"></script>
 <script src="lib/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <link href="lib/dt-core-1.13.4/css/jquery.dataTables.min.css" rel="stylesheet" />
 <link href="lib/dt-core-1.13.4/css/jquery.dataTables.extra.css" rel="stylesheet" />
@@ -106,8 +106,8 @@ <h2>teal.modules.hermes coverage - 26.54%</h2>
       </ul>
       <div class="tab-content" data-tabsetid="covr">
         <div class="tab-pane active" title="Files" data-value="Files" id="tab-covr-1">
-          <div class="datatables html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-2f7126e3e9f3617e1ef8" style="width:100%;height:500px;"></div>
-          <script type="application/json" data-for="htmlwidget-2f7126e3e9f3617e1ef8">{"x":{"filter":"none","vertical":false,"fillContainer":false,"data":[["<a href=\"#\">R/zzz.R<\/a>","<a href=\"#\">R/forestplot.R<\/a>","<a href=\"#\">R/volcanoplot.R<\/a>","<a href=\"#\">R/boxplot.R<\/a>","<a href=\"#\">R/km.R<\/a>","<a href=\"#\">R/scatterplot.R<\/a>","<a href=\"#\">R/barplot.R<\/a>","<a href=\"#\">R/pca.R<\/a>","<a href=\"#\">R/quality.R<\/a>","<a href=\"#\">R/assaySpec.R<\/a>","<a href=\"#\">R/adtteSpec.R<\/a>","<a href=\"#\">R/experimentSpec.R<\/a>","<a href=\"#\">R/geneSpec.R<\/a>","<a href=\"#\">R/sampleVarSpec.R<\/a>","<a href=\"#\">R/checkmate.R<\/a>","<a href=\"#\">R/utils.R<\/a>"],[3,313,281,261,308,259,260,465,432,152,398,283,483,524,140,79],[1,165,156,147,159,142,141,288,245,40,133,73,202,183,17,14],[0,21,25,24,26,25,27,66,58,11,40,29,85,90,9,14],[1,144,131,123,133,117,114,222,187,29,93,44,117,93,8,0],["0","0","0","0","0","0","0","0","0","2","2","2","3","1","4","8"],["0.00%","12.73%","16.03%","16.33%","16.35%","17.61%","19.15%","22.92%","23.67%","27.50%","30.08%","39.73%","42.08%","49.18%","52.94%","100.00%"]],"container":"<table class=\"row-border\">\n  <thead>\n    <tr>\n      <th>File<\/th>\n      <th>Lines<\/th>\n      <th>Relevant<\/th>\n      <th>Covered<\/th>\n      <th>Missed<\/th>\n      <th>Hits / Line<\/th>\n      <th>Coverage<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"searching":false,"dom":"t","paging":false,"columnDefs":[{"targets":6,"createdCell":"function(td, cellData, rowData, row, col) {\n  var percent = cellData.replace(\"%\", \"\");\n  if (percent > 90) {\n    var grad = \"linear-gradient(90deg, #edfde7 \" + cellData + \", white \" + cellData + \")\";\n  } else if (percent > 75) {\n    var grad = \"linear-gradient(90deg, #f9ffe5 \" + cellData + \", white \" + cellData + \")\";\n  } else {\n    var grad = \"linear-gradient(90deg, #fcece9 \" + cellData + \", white \" + cellData + \")\";\n  }\n  $(td).css(\"background\", grad);\n}\n"},{"className":"dt-right","targets":[1,2,3,4]}],"order":[],"autoWidth":false,"orderClasses":false},"callback":"function(table) {\ntable.on('click.dt', 'a', function() {\n  files = $('div#files div');\n  files.not('div.hidden').addClass('hidden');\n  id = $(this).text();\n  files.filter('div[id=\\'' + id + '\\']').removeClass('hidden');\n  $('ul.nav a[data-value=Source]').text(id).tab('show');\n});\n}","selection":{"mode":"multiple","selected":null,"target":"row","selectable":null}},"evals":["options.columnDefs.0.createdCell","callback"],"jsHooks":[]}</script>
+          <div class="datatables html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-173732f33f0ce3f838e4" style="width:100%;height:500px;"></div>
+          <script type="application/json" data-for="htmlwidget-173732f33f0ce3f838e4">{"x":{"filter":"none","vertical":false,"fillContainer":false,"data":[["<a href=\"#\">R/zzz.R<\/a>","<a href=\"#\">R/forestplot.R<\/a>","<a href=\"#\">R/volcanoplot.R<\/a>","<a href=\"#\">R/boxplot.R<\/a>","<a href=\"#\">R/km.R<\/a>","<a href=\"#\">R/scatterplot.R<\/a>","<a href=\"#\">R/barplot.R<\/a>","<a href=\"#\">R/pca.R<\/a>","<a href=\"#\">R/quality.R<\/a>","<a href=\"#\">R/assaySpec.R<\/a>","<a href=\"#\">R/adtteSpec.R<\/a>","<a href=\"#\">R/experimentSpec.R<\/a>","<a href=\"#\">R/geneSpec.R<\/a>","<a href=\"#\">R/sampleVarSpec.R<\/a>","<a href=\"#\">R/checkmate.R<\/a>","<a href=\"#\">R/utils.R<\/a>"],[3,313,281,261,308,259,260,465,432,152,398,283,483,524,140,79],[1,165,156,147,159,142,141,288,245,40,133,73,202,183,17,14],[0,21,25,24,26,25,27,66,58,11,40,29,85,90,9,14],[1,144,131,123,133,117,114,222,187,29,93,44,117,93,8,0],["0","0","0","0","0","0","0","0","0","2","2","2","3","1","4","8"],["0.00%","12.73%","16.03%","16.33%","16.35%","17.61%","19.15%","22.92%","23.67%","27.50%","30.08%","39.73%","42.08%","49.18%","52.94%","100.00%"]],"container":"<table class=\"row-border\">\n  <thead>\n    <tr>\n      <th>File<\/th>\n      <th>Lines<\/th>\n      <th>Relevant<\/th>\n      <th>Covered<\/th>\n      <th>Missed<\/th>\n      <th>Hits / Line<\/th>\n      <th>Coverage<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"searching":false,"dom":"t","paging":false,"columnDefs":[{"targets":6,"createdCell":"function(td, cellData, rowData, row, col) {\n  var percent = cellData.replace(\"%\", \"\");\n  if (percent > 90) {\n    var grad = \"linear-gradient(90deg, #edfde7 \" + cellData + \", white \" + cellData + \")\";\n  } else if (percent > 75) {\n    var grad = \"linear-gradient(90deg, #f9ffe5 \" + cellData + \", white \" + cellData + \")\";\n  } else {\n    var grad = \"linear-gradient(90deg, #fcece9 \" + cellData + \", white \" + cellData + \")\";\n  }\n  $(td).css(\"background\", grad);\n}\n"},{"className":"dt-right","targets":[1,2,3,4]}],"order":[],"autoWidth":false,"orderClasses":false},"callback":"function(table) {\ntable.on('click.dt', 'a', function() {\n  files = $('div#files div');\n  files.not('div.hidden').addClass('hidden');\n  id = $(this).text();\n  files.filter('div[id=\\'' + id + '\\']').removeClass('hidden');\n  $('ul.nav a[data-value=Source]').text(id).tab('show');\n});\n}","selection":{"mode":"multiple","selected":null,"target":"row","selectable":null}},"evals":["options.columnDefs.0.createdCell","callback"],"jsHooks":[]}</script>
         </div>
         <div class="tab-pane" title="Source" data-value="Source" id="tab-covr-2">
           <div id="files">
@@ -30337,21 +30337,21 @@ <h2>teal.modules.hermes coverage - 26.54%</h2>
                   </tr>
                   <tr class="covered">
                     <td class="num">41</td>
-                    <td class="coverage">14<em>x</em></td>
+                    <td class="coverage">16<em>x</em></td>
                     <td class="col-sm-12">
                       <pre class="language-r">  assert_flag(null.ok)</pre>
                     </td>
                   </tr>
                   <tr class="covered">
                     <td class="num">42</td>
-                    <td class="coverage">13<em>x</em></td>
+                    <td class="coverage">15<em>x</em></td>
                     <td class="col-sm-12">
                       <pre class="language-r">  ok &lt;- (null.ok &amp;&amp; test_null(x)) || test_class(x, "shiny.tag")</pre>
                     </td>
                   </tr>
                   <tr class="covered">
                     <td class="num">43</td>
-                    <td class="coverage">13<em>x</em></td>
+                    <td class="coverage">15<em>x</em></td>
                     <td class="col-sm-12">
                       <pre class="language-r">  if (!ok) {</pre>
                     </td>
@@ -30372,7 +30372,7 @@ <h2>teal.modules.hermes coverage - 26.54%</h2>
                   </tr>
                   <tr class="covered">
                     <td class="num">46</td>
-                    <td class="coverage">12<em>x</em></td>
+                    <td class="coverage">14<em>x</em></td>
                     <td class="col-sm-12">
                       <pre class="language-r">  return(TRUE)</pre>
                     </td>
diff --git a/main/coverage-report/lib/datatables-binding-0.28/datatables.js b/main/coverage-report/lib/datatables-binding-0.30/datatables.js
similarity index 99%
rename from main/coverage-report/lib/datatables-binding-0.28/datatables.js
rename to main/coverage-report/lib/datatables-binding-0.30/datatables.js
index aee8ab54..d968d8be 100644
--- a/main/coverage-report/lib/datatables-binding-0.28/datatables.js
+++ b/main/coverage-report/lib/datatables-binding-0.30/datatables.js
@@ -2,7 +2,7 @@
 
 // some helper functions: using a global object DTWidget so that it can be used
 // in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's
-// dynamic scoping, when 'code' is eval()'ed, JavaScript does not know objects
+// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects
 // from the "parent frame", e.g. JS('DTWidget') will not work unless it was made
 // a global object
 var DTWidget = {};
@@ -493,7 +493,9 @@ HTMLWidgets.widget({
               $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus();
             },
             input: function() {
-              if ($input.val() === '') filter[0].selectize.setValue([]);
+              var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val();
+              if (v1 === '[]') v1 = '';
+              if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2));
             }
           });
           var $input2 = $x.children('select');
@@ -1398,7 +1400,7 @@ HTMLWidgets.widget({
           console.log('The search keyword for column ' + i + ' is undefined')
           return;
         }
-        $(td).find('input').first().val(v);
+        $(td).find('input').first().val(v).trigger('input');
         searchColumn(i, v);
       });
       table.draw();