diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml
index bf02a968f..ee2ebec25 100644
--- a/.github/workflows/check.yaml
+++ b/.github/workflows/check.yaml
@@ -41,6 +41,25 @@ jobs:
         checking top-level files .* NOTE
       unit-test-report-brand: >-
         https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   r-cmd-non-cran:
     name: R CMD Check (non-CRAN) 🧬
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
@@ -61,6 +80,25 @@ jobs:
         checking Rd .usage sections .* NOTE
         checking for unstated dependencies in vignettes .* NOTE
         checking top-level files .* NOTE
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   coverage:
     name: Coverage 📔
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
@@ -69,6 +107,25 @@ jobs:
     with:
       additional-env-vars: |
         NOT_CRAN=true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   linter:
     if: github.event_name != 'push'
     name: SuperLinter 🦸‍♀️
@@ -80,6 +137,25 @@ jobs:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
       auto-update: true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   gitleaks:
     name: gitleaks 💧
     uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main
diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml
index 57ae80042..784f18116 100644
--- a/.github/workflows/docs.yaml
+++ b/.github/workflows/docs.yaml
@@ -42,3 +42,22 @@ jobs:
     with:
       default-landing-page: latest-tag
       additional-unit-test-report-directories: unit-test-report-non-cran
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
index aa3e7bb45..323ce2afd 100644
--- a/.github/workflows/release.yaml
+++ b/.github/workflows/release.yaml
@@ -16,12 +16,51 @@ jobs:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
       default-landing-page: latest-tag
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   validation:
     name: R Package Validation report 📃
     needs: release
     uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   release:
     name: Create release 🎉
     uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
@@ -46,6 +85,25 @@ jobs:
         checking top-level files .* NOTE
       unit-test-report-brand: >-
         https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   coverage:
     name: Coverage 📔
     needs: [release, docs]
@@ -55,6 +113,25 @@ jobs:
     with:
       additional-env-vars: |
         NOT_CRAN=true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
+        insightsengineering/nestcolor
+        insightsengineering/roxy.shinylive
   wasm:
     name: Build WASM packages 🧑‍🏭
     needs: release
diff --git a/.github/workflows/scheduled.yaml b/.github/workflows/scheduled.yaml
index fd71e5290..eb913b2ea 100644
--- a/.github/workflows/scheduled.yaml
+++ b/.github/workflows/scheduled.yaml
@@ -3,7 +3,7 @@ name: Scheduled 🕰️
 
 on:
   schedule:
-    - cron: '45 3 * * 0'
+    - cron: "45 3 * * 0"
   workflow_dispatch:
     inputs:
       chosen-workflow:
@@ -56,6 +56,23 @@ jobs:
       )
     name: revdepcheck ↩️
     uses: insightsengineering/r.pkg.template/.github/workflows/revdepcheck.yaml@main
+    with:
+      lookup-refs: |
+        insightsengineering/teal
+        insightsengineering/teal.transform
+        insightsengineering/tern
+        insightsengineering/rlistings
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.logger
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.slice
+        insightsengineering/tern.gee
+        insightsengineering/tern.mmrm
   rhub:
     if: >
       github.event_name == 'schedule' || (
@@ -70,12 +87,14 @@ jobs:
         insightsengineering/teal.transform
         insightsengineering/tern
         insightsengineering/rlistings
+        insightsengineering/formatters
         insightsengineering/rtables
+        insightsengineering/rtables.officer
         insightsengineering/teal.code
         insightsengineering/teal.data
         insightsengineering/teal.logger
         insightsengineering/teal.reporter
-        insightsengineering/teal.slice
         insightsengineering/teal.widgets
+        insightsengineering/teal.slice
         insightsengineering/tern.gee
         insightsengineering/tern.mmrm
diff --git a/DESCRIPTION b/DESCRIPTION
index d60e70082..5061956a7 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: teal.modules.clinical
 Title: 'teal' Modules for Standard Clinical Outputs
-Version: 0.9.1.9038
-Date: 2024-12-10
+Version: 0.9.1.9040
+Date: 2024-12-11
 Authors@R: c(
     person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre")),
     person("Jana", "Stoilova", , "jana.stoilova@roche.com", role = "aut"),
diff --git a/NEWS.md b/NEWS.md
index 91ce5b920..7c0402ea3 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,4 +1,4 @@
-# teal.modules.clinical 0.9.1.9038
+# teal.modules.clinical 0.9.1.9040
 
 ### Enhancements
 * Added `teal.logger` functionality for logging changes in shiny inputs in all modules.
diff --git a/R/tm_g_forest_rsp.R b/R/tm_g_forest_rsp.R
index a7b59a28e..9cc32f7c6 100644
--- a/R/tm_g_forest_rsp.R
+++ b/R/tm_g_forest_rsp.R
@@ -14,7 +14,7 @@
 #'   * `pval`: p-value of the effect.
 #'   Note, the statistics `n_tot`, `or`, and `ci` are required.
 #' @param riskdiff (`list`)\cr if a risk (proportion) difference column should be added, a list of settings to apply
-#'   within the column. See [control_riskdiff()] for details. If `NULL`, no risk difference column will be added.
+#'   within the column. See [tern::control_riskdiff()] for details. If `NULL`, no risk difference column will be added.
 #' @param obj_var_name (`character`)\cr additional text to append to the table title.
 #' @param responders (`character`)\cr values of `aval_var` that are considered to be responders.
 #' @param col_symbol_size (`integer` or `NULL`)\cr column index to be used to determine relative size for
diff --git a/R/tm_t_coxreg.R b/R/tm_t_coxreg.R
index ced01a41f..bde44f002 100644
--- a/R/tm_t_coxreg.R
+++ b/R/tm_t_coxreg.R
@@ -3,7 +3,7 @@
 #' Creates a valid expression to generate a univariable Cox regression analysis.
 #'
 #' @inheritParams template_arguments
-#' @param control (`list`)\cr list of settings for the analysis (see [control_coxreg()]).
+#' @param control (`list`)\cr list of settings for the analysis (see [tern::control_coxreg()]).
 #' @param at (`list` of `numeric`)\cr when the candidate covariate is a `numeric` type variable, use `at`
 #'   to specify the value of the covariate at which the effect should be estimated.
 #' @param append (`logical`)\cr whether the result should be appended to the previous one.
diff --git a/R/tm_t_tte.R b/R/tm_t_tte.R
index 84668c7ad..552689414 100644
--- a/R/tm_t_tte.R
+++ b/R/tm_t_tte.R
@@ -384,8 +384,8 @@ template_tte <- function(dataname = "ANL",
 #'   pre-selected option for confidence level, each within range of (0, 1).
 #' @param conf_level_survfit ([teal.transform::choices_selected()])\cr object with all available choices and
 #'   pre-selected option for confidence level, each within range of (0, 1).
-#' @param event_desc_var (`character` or [data_extract_spec()])\cr variable name with the event description
-#'   information, optional.
+#' @param event_desc_var (`character` or [teal.transform::data_extract_spec()])\cr variable name with the
+#'   event description information, optional.
 #'
 #' @section Decorating Module:
 #'
@@ -396,8 +396,8 @@ template_tte <- function(dataname = "ANL",
 #' `vignette("decorate-modules-output", package = "teal")` or the [`teal_transform_module()`] documentation.
 #'
 #' @details
-#' * The core functionality of this module is based on [coxph_pairwise()], [surv_timepoint()], and [surv_time()] from
-#' the `tern` package.
+#' * The core functionality of this module is based on [tern::coxph_pairwise()], [tern::surv_timepoint()],
+#'   and [tern::surv_time()] from the `tern` package.
 #' * The arm and stratification variables are taken from the `parentname` data.
 #' * The following variables are used in the module:
 #'
diff --git a/R/utils.R b/R/utils.R
index d2af241ed..f3a4e916f 100644
--- a/R/utils.R
+++ b/R/utils.R
@@ -434,7 +434,7 @@ split_col_expr <- function(compare, combine, ref, arm_var) {
 #'
 #' @note uses the regex `\\*|:` to perform the split.
 #'
-#' @return  a [choices_selected()] object.
+#' @return  a [teal.transform::choices_selected()] object.
 #'
 #' @examples
 #' split_choices(choices_selected(choices = c("x:y", "a*b"), selected = all_choices()))
diff --git a/man/split_choices.Rd b/man/split_choices.Rd
index bea53ac31..13c4389bd 100644
--- a/man/split_choices.Rd
+++ b/man/split_choices.Rd
@@ -12,7 +12,7 @@ split_choices(x)
 object with interaction terms}
 }
 \value{
-a \code{\link[=choices_selected]{choices_selected()}} object.
+a \code{\link[teal.transform:choices_selected]{teal.transform::choices_selected()}} object.
 }
 \description{
 Split \code{choices_selected} objects with interactions into
diff --git a/man/template_coxreg_m.Rd b/man/template_coxreg_m.Rd
index d259da420..52e8cc999 100644
--- a/man/template_coxreg_m.Rd
+++ b/man/template_coxreg_m.Rd
@@ -45,7 +45,7 @@ to specify the value of the covariate at which the effect should be estimated.}
 
 \item{combine_comp_arms}{(\code{logical})\cr triggers the combination of comparison arms.}
 
-\item{control}{(\code{list})\cr list of settings for the analysis (see \code{\link[=control_coxreg]{control_coxreg()}}).}
+\item{control}{(\code{list})\cr list of settings for the analysis (see \code{\link[tern:control_coxreg]{tern::control_coxreg()}}).}
 
 \item{na_level}{(\code{string})\cr used to replace all \code{NA} or empty values
 in character or factor variables in the data. Defaults to \code{"<Missing>"}. To set a
diff --git a/man/template_coxreg_u.Rd b/man/template_coxreg_u.Rd
index b336dc303..8205d16d7 100644
--- a/man/template_coxreg_u.Rd
+++ b/man/template_coxreg_u.Rd
@@ -46,7 +46,7 @@ to specify the value of the covariate at which the effect should be estimated.}
 
 \item{combine_comp_arms}{(\code{logical})\cr triggers the combination of comparison arms.}
 
-\item{control}{(\code{list})\cr list of settings for the analysis (see \code{\link[=control_coxreg]{control_coxreg()}}).}
+\item{control}{(\code{list})\cr list of settings for the analysis (see \code{\link[tern:control_coxreg]{tern::control_coxreg()}}).}
 
 \item{na_level}{(\code{string})\cr used to replace all \code{NA} or empty values
 in character or factor variables in the data. Defaults to \code{"<Missing>"}. To set a
diff --git a/man/template_forest_rsp.Rd b/man/template_forest_rsp.Rd
index c0b824327..a367aef88 100644
--- a/man/template_forest_rsp.Rd
+++ b/man/template_forest_rsp.Rd
@@ -58,7 +58,7 @@ Note, the statistics \code{n_tot}, \code{or}, and \code{ci} are required.
 }}
 
 \item{riskdiff}{(\code{list})\cr if a risk (proportion) difference column should be added, a list of settings to apply
-within the column. See \code{\link[=control_riskdiff]{control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
+within the column. See \code{\link[tern:control_riskdiff]{tern::control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
 
 \item{conf_level}{(\code{numeric})\cr value for the confidence level within the range of (0, 1).}
 
diff --git a/man/template_forest_tte.Rd b/man/template_forest_tte.Rd
index 084845064..332f2f07c 100644
--- a/man/template_forest_tte.Rd
+++ b/man/template_forest_tte.Rd
@@ -61,7 +61,7 @@ are required.
 }}
 
 \item{riskdiff}{(\code{list})\cr if a risk (proportion) difference column should be added, a list of settings to apply
-within the column. See \code{\link[=control_riskdiff]{control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
+within the column. See \code{\link[tern:control_riskdiff]{tern::control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
 
 \item{conf_level}{(\code{numeric})\cr value for the confidence level within the range of (0, 1).}
 
diff --git a/man/tm_g_forest_rsp.Rd b/man/tm_g_forest_rsp.Rd
index 1472b09f3..3812c351a 100644
--- a/man/tm_g_forest_rsp.Rd
+++ b/man/tm_g_forest_rsp.Rd
@@ -75,7 +75,7 @@ Note, the statistics \code{n_tot}, \code{or}, and \code{ci} are required.
 }}
 
 \item{riskdiff}{(\code{list})\cr if a risk (proportion) difference column should be added, a list of settings to apply
-within the column. See \code{\link[=control_riskdiff]{control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
+within the column. See \code{\link[tern:control_riskdiff]{tern::control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
 
 \item{fixed_symbol_size}{(\code{logical})\cr When (\code{TRUE}), the same symbol size is used for plotting each estimate.
 Otherwise, the symbol size will be proportional to the sample size in each each subgroup.}
diff --git a/man/tm_g_forest_tte.Rd b/man/tm_g_forest_tte.Rd
index 30bf0ab2d..6a63e6fd9 100644
--- a/man/tm_g_forest_tte.Rd
+++ b/man/tm_g_forest_tte.Rd
@@ -83,7 +83,7 @@ are required.
 }}
 
 \item{riskdiff}{(\code{list})\cr if a risk (proportion) difference column should be added, a list of settings to apply
-within the column. See \code{\link[=control_riskdiff]{control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
+within the column. See \code{\link[tern:control_riskdiff]{tern::control_riskdiff()}} for details. If \code{NULL}, no risk difference column will be added.}
 
 \item{conf_level}{(\code{\link[teal.transform:choices_selected]{teal.transform::choices_selected()}})\cr object with
 all available choices and pre-selected option for the confidence level, each within range of (0, 1).}
diff --git a/man/tm_t_tte.Rd b/man/tm_t_tte.Rd
index 508c01531..3fb8d1828 100644
--- a/man/tm_t_tte.Rd
+++ b/man/tm_t_tte.Rd
@@ -76,8 +76,8 @@ for time points that can be used in \code{\link[tern:survival_timepoint]{tern::s
 \item{time_unit_var}{(\code{\link[teal.transform:choices_selected]{teal.transform::choices_selected()}})\cr object
 with all available choices and pre-selected option for the time unit variable.}
 
-\item{event_desc_var}{(\code{character} or \code{\link[=data_extract_spec]{data_extract_spec()}})\cr variable name with the event description
-information, optional.}
+\item{event_desc_var}{(\code{character} or \code{\link[teal.transform:data_extract_spec]{teal.transform::data_extract_spec()}})\cr variable name with the
+event description information, optional.}
 
 \item{add_total}{(\code{logical})\cr whether to include column with total number of patients.}
 
@@ -118,8 +118,8 @@ template for \code{TTET01} available \href{https://insightsengineering.github.io
 }
 \details{
 \itemize{
-\item The core functionality of this module is based on \code{\link[=coxph_pairwise]{coxph_pairwise()}}, \code{\link[=surv_timepoint]{surv_timepoint()}}, and \code{\link[=surv_time]{surv_time()}} from
-the \code{tern} package.
+\item The core functionality of this module is based on \code{\link[tern:survival_coxph_pairwise]{tern::coxph_pairwise()}}, \code{\link[tern:survival_timepoint]{tern::surv_timepoint()}},
+and \code{\link[tern:survival_time]{tern::surv_time()}} from the \code{tern} package.
 \item The arm and stratification variables are taken from the \code{parentname} data.
 \item The following variables are used in the module:
 \itemize{