From cebb29260cf68b1a118a9becd7c2fc0e6896c505 Mon Sep 17 00:00:00 2001 From: vedhav Date: Thu, 14 Dec 2023 03:43:31 +0000 Subject: [PATCH] [skip deploy] Update renv.lock file for RNA-seq app --- RNA-seq/renv.lock | 723 +++++++++++++++++----------------------------- 1 file changed, 267 insertions(+), 456 deletions(-) diff --git a/RNA-seq/renv.lock b/RNA-seq/renv.lock index 2eb654f5..203b70af 100644 --- a/RNA-seq/renv.lock +++ b/RNA-seq/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.3.1", + "Version": "4.3.2", "Repositories": [ { "Name": "BioCsoft", @@ -256,7 +256,7 @@ }, "DT": { "Package": "DT", - "Version": "0.29", + "Version": "0.31", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -269,7 +269,7 @@ "magrittr", "promises" ], - "Hash": "02f42b77a951a5ea7c891ef5c187d774" + "Hash": "77b5189f5272ae2b21e3ac2175ad107c" }, "DelayedArray": { "Package": "DelayedArray", @@ -304,7 +304,7 @@ }, "GenomeInfoDb": { "Package": "GenomeInfoDb", - "Version": "1.36.3", + "Version": "1.36.4", "Source": "Bioconductor", "Requirements": [ "BiocGenerics", @@ -318,7 +318,7 @@ "stats4", "utils" ], - "Hash": "7e59ef611ff4e9014ed59d3998aa34e4" + "Hash": "1c6756527d78e8135d34662d2e1d54ec" }, "GenomeInfoDbData": { "Package": "GenomeInfoDbData", @@ -331,7 +331,7 @@ }, "GenomicRanges": { "Package": "GenomicRanges", - "Version": "1.52.0", + "Version": "1.52.1", "Source": "Bioconductor", "Requirements": [ "BiocGenerics", @@ -345,7 +345,7 @@ "stats4", "utils" ], - "Hash": "dc2970e434666341650a7983435597bf" + "Hash": "c9471497a07953ded9b8889879c079e9" }, "GetoptLong": { "Package": "GetoptLong", @@ -390,7 +390,7 @@ }, "KEGGREST": { "Package": "KEGGREST", - "Version": "1.40.0", + "Version": "1.40.1", "Source": "Bioconductor", "Requirements": [ "Biostrings", @@ -399,7 +399,7 @@ "methods", "png" ], - "Hash": "b5a4bf06281c694bc38412812c70b011" + "Hash": "2988b310648d92e9d5c877d627068b9d" }, "MASS": { "Package": "MASS", @@ -418,9 +418,9 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.6-1.1", + "Version": "1.6-4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "grDevices", @@ -431,7 +431,7 @@ "stats", "utils" ], - "Hash": "1a00d4828f33a9d690806e98bd17150c" + "Hash": "d9c655b30a2edc6bb2244c1d1e8d549d" }, "MatrixGenerics": { "Package": "MatrixGenerics", @@ -445,7 +445,7 @@ }, "MatrixModels": { "Package": "MatrixModels", - "Version": "0.5-2", + "Version": "0.5-3", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -454,7 +454,7 @@ "methods", "stats" ], - "Hash": "26749bd5c7c4123dd23aeb9159be22d6" + "Hash": "0776bf7526869e0286b0463cb72fb211" }, "MultiAssayExperiment": { "Package": "MultiAssayExperiment", @@ -518,9 +518,9 @@ }, "R.utils": { "Package": "R.utils", - "Version": "2.12.2", + "Version": "2.12.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "R.methodsS3", @@ -529,7 +529,7 @@ "tools", "utils" ], - "Hash": "325f01db13da12c04d8f6e7be36ff514" + "Hash": "3dc2829b790254bfba21e60965787651" }, "R6": { "Package": "R6", @@ -553,21 +553,21 @@ }, "RCurl": { "Package": "RCurl", - "Version": "1.98-1.12", + "Version": "1.98-1.13", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "bitops", "methods" ], - "Hash": "1d6ed2d006d483f31c6d5531f3a39923" + "Hash": "318c7b8d68358b45cbc6115dda23d7db" }, "RSQLite": { "Package": "RSQLite", - "Version": "2.3.1", + "Version": "2.3.4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "DBI", "R", @@ -577,9 +577,10 @@ "memoise", "methods", "pkgconfig", - "plogr" + "plogr", + "rlang" ], - "Hash": "207c90cd5438a1f596da2cd54c606fee" + "Hash": "4bf2af2d714d0ee2b4fec0e6b8c150e6" }, "Rcpp": { "Package": "Rcpp", @@ -594,7 +595,7 @@ }, "RcppArmadillo": { "Package": "RcppArmadillo", - "Version": "0.12.6.4.0", + "Version": "0.12.6.6.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -604,27 +605,26 @@ "stats", "utils" ], - "Hash": "cafeccdc6577a445a15ce98b6a1805cf" + "Hash": "d2b60e0a15d73182a3a766ff0a7d0d7f" }, "RcppEigen": { "Package": "RcppEigen", - "Version": "0.3.3.9.3", + "Version": "0.3.3.9.4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ - "Matrix", "R", "Rcpp", "stats", "utils" ], - "Hash": "1e035db628cefb315c571202d70202fe" + "Hash": "acb0a5bf38490f26ab8661b467f4f53a" }, "Rdpack": { "Package": "Rdpack", - "Version": "2.5", + "Version": "2.6", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "methods", @@ -632,7 +632,7 @@ "tools", "utils" ], - "Hash": "2a4dbc2502d3fd9f1c5d24b14a223583" + "Hash": "3e1384ada5d3948b392e98b11434d972" }, "S4Arrays": { "Package": "S4Arrays", @@ -704,15 +704,15 @@ }, "XML": { "Package": "XML", - "Version": "3.99-0.14", + "Version": "3.99-0.16", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "methods", "utils" ], - "Hash": "e5c8af79df616c135b21eaeb1dc6bc5c" + "Hash": "131e2febe15d5bbca3a37bd69e71b873" }, "XVector": { "Package": "XVector", @@ -870,10 +870,13 @@ }, "brio": { "Package": "brio", - "Version": "1.1.3", + "Version": "1.1.4", "Source": "Repository", - "Repository": "CRAN", - "Hash": "976cf154dfb043c012d87cddd8bca363" + "Repository": "RSPM", + "Requirements": [ + "R" + ], + "Hash": "68bd2b066e1fe780bbf62fc8bcc36de3" }, "broom": { "Package": "broom", @@ -898,7 +901,7 @@ }, "bslib": { "Package": "bslib", - "Version": "0.5.1", + "Version": "0.6.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -909,12 +912,13 @@ "htmltools", "jquerylib", "jsonlite", + "lifecycle", "memoise", "mime", "rlang", "sass" ], - "Hash": "283015ddfbb9d7bf15ea9f0b5698f0d9" + "Hash": "c0d8599494bc7fb408cd206bbdd9cab0" }, "cachem": { "Package": "cachem", @@ -976,15 +980,15 @@ }, "checkmate": { "Package": "checkmate", - "Version": "2.2.0", + "Version": "2.3.1", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "backports", "utils" ], - "Hash": "ca9c113196136f4a9ca9ce6079c2c99e" + "Hash": "c01cab1cb0f9125211a6fc99d540e315" }, "circlize": { "Package": "circlize", @@ -1007,14 +1011,14 @@ }, "cli": { "Package": "cli", - "Version": "3.6.1", + "Version": "3.6.2", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "utils" ], - "Hash": "89e6d8219950eac806ae0c489052048a" + "Hash": "1216ac65ac55ec0058a6f75d7ca0fd52" }, "clue": { "Package": "clue", @@ -1032,9 +1036,9 @@ }, "cluster": { "Package": "cluster", - "Version": "2.1.4", + "Version": "2.1.6", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "grDevices", @@ -1042,7 +1046,7 @@ "stats", "utils" ], - "Hash": "5edbbabab6ce0bf7900a74fd4358628e" + "Hash": "0aaa05204035dc43ea0004b9c76611dd" }, "codetools": { "Package": "codetools", @@ -1094,13 +1098,13 @@ }, "cpp11": { "Package": "cpp11", - "Version": "0.4.6", + "Version": "0.4.7", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R" ], - "Hash": "707fae4bbf73697ec8d85f9d7076c061" + "Hash": "5a295d7d963cc5035284dcdbaf334f4e" }, "crayon": { "Package": "crayon", @@ -1116,56 +1120,41 @@ }, "crosstalk": { "Package": "crosstalk", - "Version": "1.2.0", + "Version": "1.2.1", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R6", "htmltools", "jsonlite", "lazyeval" ], - "Hash": "6aa54f69598c32177e920eb3402e8293" - }, - "crul": { - "Package": "crul", - "Version": "1.4.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "curl", - "httpcode", - "jsonlite", - "mime", - "urltools" - ], - "Hash": "1eb00a531331c91d970f3af74b75321f" + "Hash": "ab12c7b080a57475248a30f4db6298c0" }, "curl": { "Package": "curl", - "Version": "5.0.2", + "Version": "5.2.0", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R" ], - "Hash": "511bacbfa153a15251166b463b4da4f9" + "Hash": "ce88d13c0b10fe88a37d9c59dba2d7f9" }, "data.table": { "Package": "data.table", - "Version": "1.14.8", + "Version": "1.14.10", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "methods" ], - "Hash": "b4c06e554f33344e044ccd7fdca750a9" + "Hash": "6ea17a32294d8ca00455825ab0cf71b9" }, "dbplyr": { "Package": "dbplyr", - "Version": "2.3.3", + "Version": "2.4.0", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1189,21 +1178,20 @@ "vctrs", "withr" ], - "Hash": "d6fd1b1440c1cacc6623aaa4e9fe352b" + "Hash": "59351f28a81f0742720b85363c4fdd61" }, "desc": { "Package": "desc", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "R6", "cli", - "rprojroot", "utils" ], - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21" + "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f" }, "diffobj": { "Package": "diffobj", @@ -1247,7 +1235,7 @@ }, "dplyr": { "Package": "dplyr", - "Version": "1.1.3", + "Version": "1.1.4", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1266,7 +1254,7 @@ "utils", "vctrs" ], - "Hash": "e85ffbebaad5f70e1a2e2ef4302b4949" + "Hash": "fedd9d00c2944ff00a0e2696ccf048ec" }, "edgeR": { "Package": "edgeR", @@ -1297,7 +1285,7 @@ }, "emmeans": { "Package": "emmeans", - "Version": "1.8.8", + "Version": "1.8.9", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1310,7 +1298,7 @@ "stats", "utils" ], - "Hash": "1f74dbb608b24135dde896f84a2d117b" + "Hash": "6b4662535108aae877533198d72a2318" }, "estimability": { "Package": "estimability", @@ -1324,26 +1312,26 @@ }, "evaluate": { "Package": "evaluate", - "Version": "0.21", + "Version": "0.23", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "methods" ], - "Hash": "d59f3b464e8da1aef82dc04b588b8dfb" + "Hash": "daf4a1246be12c1fa8c7705a0935c1a0" }, "fansi": { "Package": "fansi", - "Version": "1.0.4", + "Version": "1.0.6", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "grDevices", "utils" ], - "Hash": "1d9e7ad3c8312a192dea7d3db0274fde" + "Hash": "962174cf2aeb5b9eea581522286a911f" }, "farver": { "Package": "farver", @@ -1361,54 +1349,13 @@ }, "filelock": { "Package": "filelock", - "Version": "1.0.2", - "Source": "Repository", - "Repository": "CRAN", - "Hash": "38ec653c2613bed60052ba3787bd8a2c" - }, - "flextable": { - "Package": "flextable", - "Version": "0.9.3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "data.table", - "gdtools", - "grDevices", - "graphics", - "grid", - "htmltools", - "knitr", - "officer", - "ragg", - "rlang", - "rmarkdown", - "stats", - "utils", - "uuid", - "xml2" - ], - "Hash": "73798b453ca1c8421a64a6ea0e045ba5" - }, - "fontBitstreamVera": { - "Package": "fontBitstreamVera", - "Version": "0.1.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "f6068021eff4aba735a9b2353516636c" - }, - "fontLiberation": { - "Package": "fontLiberation", - "Version": "0.1.0", + "Version": "1.0.3", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "R" ], - "Hash": "f918c5e723f86f409912104d5b7a71d6" + "Hash": "192053c276525c8495ccfd523aa8f2d1" }, "fontawesome": { "Package": "fontawesome", @@ -1422,18 +1369,6 @@ ], "Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d" }, - "fontquiver": { - "Package": "fontquiver", - "Version": "0.2.1", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "fontBitstreamVera", - "fontLiberation" - ], - "Hash": "fc0f4226379e451057d55419fd31761e" - }, "forcats": { "Package": "forcats", "Version": "1.0.0", @@ -1475,14 +1410,14 @@ }, "formatters": { "Package": "formatters", - "Version": "0.5.2.9003", + "Version": "0.5.5", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "formatters", - "RemoteRef": "main", - "RemoteSha": "723f2fc575cb8be3301e72a9ac6074a001bd68d5", + "RemoteRef": "v0.5.5", + "RemoteSha": "39377e947637327d60012028f3b1c90cc4b88eb4", "Requirements": [ "R", "checkmate", @@ -1490,7 +1425,7 @@ "htmltools", "methods" ], - "Hash": "566167b0a662cb78c583e67feb2a473e" + "Hash": "7e9233a5281c74ea6738a3b0d6d0dceb" }, "fs": { "Package": "fs", @@ -1526,23 +1461,6 @@ ], "Hash": "0d9bf02413ddc2bbe8da9ce369dcdd2b" }, - "gdtools": { - "Package": "gdtools", - "Version": "0.3.3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "Rcpp", - "curl", - "fontquiver", - "gfonts", - "htmltools", - "systemfonts", - "tools" - ], - "Hash": "98158453e15bbd2486fac8454f4b4409" - }, "generics": { "Package": "generics", "Version": "0.1.3", @@ -1554,23 +1472,6 @@ ], "Hash": "15e9634c0fcd294799e9b2e929ed1b86" }, - "gfonts": { - "Package": "gfonts", - "Version": "0.2.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "crayon", - "crul", - "glue", - "htmltools", - "jsonlite", - "shiny", - "utils" - ], - "Hash": "a535d76cf92645364997a8751396d63b" - }, "ggfortify": { "Package": "ggfortify", "Version": "0.4.16", @@ -1610,7 +1511,7 @@ }, "ggplot2": { "Package": "ggplot2", - "Version": "3.4.3", + "Version": "3.4.4", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1631,13 +1532,13 @@ "vctrs", "withr" ], - "Hash": "85846544c596e71f8f46483ab165da33" + "Hash": "313d31eff2274ecf4c1d3581db7241f9" }, "ggrepel": { "Package": "ggrepel", - "Version": "0.9.3", + "Version": "0.9.4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "Rcpp", @@ -1647,7 +1548,7 @@ "scales", "withr" ], - "Hash": "92edfac53774706b4d6099f3ee6f6306" + "Hash": "e9839af82cc43fda486a638b68b439b2" }, "glue": { "Package": "glue", @@ -1691,14 +1592,14 @@ }, "hermes": { "Package": "hermes", - "Version": "1.0.1.9019", + "Version": "0.99.5", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "hermes", - "RemoteRef": "main", - "RemoteSha": "dc66117fb5d577d72a318e007d83b76927a40f0c", + "RemoteRef": "v0.99.5", + "RemoteSha": "c090c9ef05b96f6fb489c9110cb01054ec085cdc", "Requirements": [ "Biobase", "BiocGenerics", @@ -1734,7 +1635,7 @@ "tidyr", "utils" ], - "Hash": "de10a8db69e05e338633e84fd224edef" + "Hash": "476b284df86da9aee83de9aaf390135d" }, "highr": { "Package": "highr", @@ -1763,7 +1664,7 @@ }, "htmltools": { "Package": "htmltools", - "Version": "0.5.6", + "Version": "0.5.7", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -1776,13 +1677,13 @@ "rlang", "utils" ], - "Hash": "a2326a66919a3311f7fbb1e3bf568283" + "Hash": "2d7b3857980e0e0d0a1fd6f11928ab0f" }, "htmlwidgets": { "Package": "htmlwidgets", - "Version": "1.6.2", + "Version": "1.6.4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "grDevices", "htmltools", @@ -1791,20 +1692,13 @@ "rmarkdown", "yaml" ], - "Hash": "a865aa85bcb2697f47505bfd70422471" - }, - "httpcode": { - "Package": "httpcode", - "Version": "0.3.0", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "13641a1c6d2cc98801b76764078e17ea" + "Hash": "04291cc45198225444a397606810ac37" }, "httpuv": { "Package": "httpuv", - "Version": "1.6.11", + "Version": "1.6.13", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "R6", @@ -1813,7 +1707,7 @@ "promises", "utils" ], - "Hash": "838602f54e32c1a0f8cc80708cefcefa" + "Hash": "d23d2879001f3d82ee9dc38a9ef53c4c" }, "httr": { "Package": "httr", @@ -1864,19 +1758,19 @@ }, "jsonlite": { "Package": "jsonlite", - "Version": "1.8.7", + "Version": "1.8.8", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "methods" ], - "Hash": "266a20443ca13c65688b2116d5220f76" + "Hash": "e1b9c55281c5adc4dd113652d9e26768" }, "knitr": { "Package": "knitr", - "Version": "1.44", + "Version": "1.45", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "evaluate", @@ -1886,7 +1780,7 @@ "xfun", "yaml" ], - "Hash": "60885b9f746c9dfaef110d070b5f7dc0" + "Hash": "1ec462871063897135c1bcbe0fc8f07d" }, "labeling": { "Package": "labeling", @@ -1912,20 +1806,20 @@ }, "later": { "Package": "later", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "Rcpp", "rlang" ], - "Hash": "40401c9cf2bc2259dfe83311c9384710" + "Hash": "a3e051d405326b8b0012377434c62b37" }, "lattice": { "Package": "lattice", - "Version": "0.21-8", + "Version": "0.22-5", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "grDevices", @@ -1934,7 +1828,7 @@ "stats", "utils" ], - "Hash": "0b8a6d63c8770f02a8b5635f3c431e6b" + "Hash": "7c5e89f04e72d6611c77451f6331a091" }, "lazyeval": { "Package": "lazyeval", @@ -1948,16 +1842,16 @@ }, "lifecycle": { "Package": "lifecycle", - "Version": "1.0.3", + "Version": "1.0.4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "cli", "glue", "rlang" ], - "Hash": "001cecbeac1cff9301bdc3775ee46a86" + "Hash": "b8552d117e1b808b09a832f589b79035" }, "limma": { "Package": "limma", @@ -1975,9 +1869,9 @@ }, "lme4": { "Package": "lme4", - "Version": "1.1-34", + "Version": "1.1-35.1", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "MASS", "Matrix", @@ -1997,7 +1891,7 @@ "stats", "utils" ], - "Hash": "73ed88b282d27d4cf3d89b744aa21217" + "Hash": "07fb0c5b727b15b0ce40feb641498e4e" }, "locfit": { "Package": "locfit", @@ -2032,13 +1926,13 @@ }, "matrixStats": { "Package": "matrixStats", - "Version": "1.0.0", + "Version": "1.2.0", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R" ], - "Hash": "9143629fd64335aac6a6250d1c1ed82a" + "Hash": "33a3ca9e732b57244d14f5d732ffc9eb" }, "memoise": { "Package": "memoise", @@ -2101,36 +1995,36 @@ }, "mvtnorm": { "Package": "mvtnorm", - "Version": "1.2-3", + "Version": "1.2-4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "stats" ], - "Hash": "463b268710930f7bffef33147400966a" + "Hash": "17e96668f44a28aef0981d9e17c49b59" }, "nestcolor": { "Package": "nestcolor", - "Version": "0.1.2.9006", + "Version": "0.1.2", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "nestcolor", - "RemoteRef": "main", - "RemoteSha": "03d0b1e84bfbda25d1431bdd45d4ab281422d8d2", + "RemoteRef": "v0.1.2", + "RemoteSha": "917de3cf0cb715f808c5a345b09ebda0d26ccf22", "Requirements": [ "R", "checkmate", "ggplot2", "lifecycle" ], - "Hash": "7096c1653ec62e9a8a212c4423612c82" + "Hash": "03774f49b02ebcb8f3ef09d68852bed6" }, "nlme": { "Package": "nlme", - "Version": "3.1-163", + "Version": "3.1-164", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -2140,7 +2034,7 @@ "stats", "utils" ], - "Hash": "8d1938040a05566f4f7a14af4feadd6b" + "Hash": "a623a2239e642806158bc4dc3f51565d" }, "nloptr": { "Package": "nloptr", @@ -2184,25 +2078,6 @@ ], "Hash": "df58958f293b166e4ab885ebcad90e02" }, - "officer": { - "Package": "officer", - "Version": "0.6.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R6", - "grDevices", - "graphics", - "openssl", - "ragg", - "stats", - "utils", - "uuid", - "xml2", - "zip" - ], - "Hash": "d570077027cfedcf743d86838ffbd885" - }, "openssl": { "Package": "openssl", "Version": "2.1.1", @@ -2250,7 +2125,7 @@ }, "pkgbuild": { "Package": "pkgbuild", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -2258,13 +2133,10 @@ "R6", "callr", "cli", - "crayon", "desc", - "prettyunits", - "processx", - "rprojroot" + "processx" ], - "Hash": "beb25b32a957a22a5c301a9e441190b3" + "Hash": "c0143443203205e6a2760ce553dafc24" }, "pkgconfig": { "Package": "pkgconfig", @@ -2306,9 +2178,9 @@ }, "plotly": { "Package": "plotly", - "Version": "4.10.2", + "Version": "4.10.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "RColorBrewer", @@ -2334,18 +2206,18 @@ "vctrs", "viridisLite" ], - "Hash": "6c00a09ba7d34917d9a3e28b15dd74e3" + "Hash": "56914cc61df53f2d0283d5498680867e" }, "plyr": { "Package": "plyr", - "Version": "1.8.8", + "Version": "1.8.9", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "Rcpp" ], - "Hash": "d744387aef9047b0b48be2933d78e862" + "Hash": "6b8177fd19982f0020743fadbfdbd933" }, "png": { "Package": "png", @@ -2376,16 +2248,16 @@ }, "processx": { "Package": "processx", - "Version": "3.8.2", + "Version": "3.8.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "R6", "ps", "utils" ], - "Hash": "3efbd8ac1be0296a46c55387aeace0f3" + "Hash": "82d48b1aec56084d9438dbf98087a7e9" }, "productplots": { "Package": "productplots", @@ -2400,16 +2272,17 @@ }, "progress": { "Package": "progress", - "Version": "1.2.2", + "Version": "1.2.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ + "R", "R6", "crayon", "hms", "prettyunits" ], - "Hash": "14dc9f7a3c91ebb14ec5bb9208a07061" + "Hash": "f4625e061cb2865f111b47ff163a5ca6" }, "promises": { "Package": "promises", @@ -2471,17 +2344,6 @@ ], "Hash": "1bbc97f7d637ab3917c514a69047b2c1" }, - "ragg": { - "Package": "ragg", - "Version": "1.2.5", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "systemfonts", - "textshaping" - ], - "Hash": "690bc058ea2b1b8a407d3cfe3dce3ef9" - }, "rappdirs": { "Package": "rappdirs", "Version": "0.3.3", @@ -2494,15 +2356,15 @@ }, "rbibutils": { "Package": "rbibutils", - "Version": "2.2.15", + "Version": "2.2.16", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "tools", "utils" ], - "Hash": "565c201eeda84b882b592618055b0d92" + "Hash": "8c06968e0a5b0209c5f34239b1302336" }, "rematch2": { "Package": "rematch2", @@ -2536,14 +2398,14 @@ }, "rlang": { "Package": "rlang", - "Version": "1.1.1", + "Version": "1.1.2", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "utils" ], - "Hash": "a85c767b55f0bf9b7ad16c6d7baee5bb" + "Hash": "50a6dbdc522936ca35afc5e2082ea91b" }, "rmarkdown": { "Package": "rmarkdown", @@ -2571,40 +2433,41 @@ }, "rprojroot": { "Package": "rprojroot", - "Version": "2.0.3", + "Version": "2.0.4", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R" ], - "Hash": "1de7ab598047a87bba48434ba35d497d" + "Hash": "4c8415e0ec1e29f3f4f6fc108bef0144" }, "rtables": { "Package": "rtables", - "Version": "0.6.3.9001", + "Version": "0.6.6", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "rtables", - "RemoteRef": "main", - "RemoteSha": "7d6d0854144cd488b15586470849cc8133aaf788", + "RemoteRef": "v0.6.6", + "RemoteSha": "f4c7da78078404e5fb00e0eed8eb03958092b33b", "Requirements": [ "R", + "checkmate", "formatters", - "grid", "htmltools", "magrittr", "methods", - "stats" + "stats", + "stringi" ], - "Hash": "582b84c0929e74d52c7d763f32ea07a9" + "Hash": "1a8227bfe8398715bd3993ab3ac955be" }, "sass": { "Package": "sass", - "Version": "0.4.7", + "Version": "0.4.8", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R6", "fs", @@ -2612,57 +2475,59 @@ "rappdirs", "rlang" ], - "Hash": "6bd4d33b50ff927191ec9acbf52fd056" + "Hash": "168f9353c76d4c4b0a0bbf72e2c2d035" }, "scales": { "Package": "scales", - "Version": "1.2.1", + "Version": "1.3.0", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "R6", "RColorBrewer", + "cli", "farver", + "glue", "labeling", "lifecycle", "munsell", "rlang", "viridisLite" ], - "Hash": "906cb23d2f1c5680b8ce439b44c6fa63" + "Hash": "c19df082ba346b0ffa6f833e92de34d1" }, "scda": { "Package": "scda", - "Version": "0.1.6.9012", + "Version": "0.1.6", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "scda", - "RemoteRef": "main", - "RemoteSha": "2511b800d44b2e6c9da46f9ba0e1363a817b3eae", + "RemoteRef": "v0.1.6", + "RemoteSha": "665d4540a8f3c9e8d9271c33b5dd70296b49636c", "Remotes": "insightsengineering/scda.2022@*release", "Requirements": [ "R", "utils" ], - "Hash": "c11e2fbd3d5aa43e72d162e6b3fcc666" + "Hash": "050ae235c739506fb50990d8e03518bb" }, "scda.2022": { "Package": "scda.2022", - "Version": "0.1.5.9003", + "Version": "0.1.5", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "scda.2022", - "RemoteRef": "main", - "RemoteSha": "75b1289bb9b85d5d9ea56fa738525f560798d98f", + "RemoteRef": "v0.1.5", + "RemoteSha": "5b08051312fababe15476f21323d17bcbb0543cf", "Requirements": [ "R" ], - "Hash": "9eaa41a853cf7e6cd9dc7a286c2b2e61" + "Hash": "0e04543b6e8a5f658699c9cdc50534c8" }, "shape": { "Package": "shape", @@ -2679,7 +2544,7 @@ }, "shiny": { "Package": "shiny", - "Version": "1.7.5", + "Version": "1.8.0", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -2709,7 +2574,7 @@ "withr", "xtable" ], - "Hash": "438b99792adbe82a8329ad8697d45afe" + "Hash": "3a1f41807d648a908e3c7f0334bf85e6" }, "shinyRadioMatrix": { "Package": "shinyRadioMatrix", @@ -2785,16 +2650,16 @@ }, "shinyvalidate": { "Package": "shinyvalidate", - "Version": "0.1.2", + "Version": "0.1.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "glue", "htmltools", "rlang", "shiny" ], - "Hash": "4ce7aa115e26a4eefbecab1b27bc3ada" + "Hash": "fe6e75a1c1722b2d23cb4d4dbe1006df" }, "snow": { "Package": "snow", @@ -2819,22 +2684,22 @@ }, "stringi": { "Package": "stringi", - "Version": "1.7.12", + "Version": "1.8.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "stats", "tools", "utils" ], - "Hash": "ca8bd84263c77310739d2cf64d84d7c9" + "Hash": "058aebddea264f4c99401515182e656a" }, "stringr": { "Package": "stringr", - "Version": "1.5.0", + "Version": "1.5.1", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "R", "cli", @@ -2845,7 +2710,7 @@ "stringi", "vctrs" ], - "Hash": "671a4d384ae9d32fc47a14e98bfa3dc8" + "Hash": "960e2ae9e09656611e0b8214ad543207" }, "styler": { "Package": "styler", @@ -2889,27 +2754,16 @@ "Repository": "CRAN", "Hash": "3a1be13d68d47a8cd0bfd74739ca1555" }, - "systemfonts": { - "Package": "systemfonts", - "Version": "1.0.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "cpp11" - ], - "Hash": "90b28393209827327de889f49935140a" - }, "teal": { "Package": "teal", - "Version": "0.14.0.9009", + "Version": "0.14.0", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal", - "RemoteRef": "main", - "RemoteSha": "329f7f982cc343a464f6c7cc634bc1052b0d0db5", + "RemoteRef": "v0.14.0", + "RemoteSha": "bf6262bf7f3383966b5148aac5059929a0f2bdfd", "Requirements": [ "R", "checkmate", @@ -2928,18 +2782,18 @@ "teal.widgets", "utils" ], - "Hash": "c109e7e14a9a5b6821866100c77e3df6" + "Hash": "191cbb46baf9607dd6493cf5cb5b587b" }, "teal.code": { "Package": "teal.code", - "Version": "0.4.1.9000", + "Version": "0.4.1", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.code", - "RemoteRef": "main", - "RemoteSha": "41f660b0b8ffdd54323b5e6e0f16371644865995", + "RemoteRef": "v0.4.1", + "RemoteSha": "7b14c0ae5579dc489b062a697b7fd756b324449e", "Requirements": [ "R", "checkmate", @@ -2950,18 +2804,18 @@ "shiny", "styler" ], - "Hash": "dda25b1a0b8eb312e4d5748391055b6a" + "Hash": "b78bea6a04fa52360afc602a5b5a3288" }, "teal.data": { "Package": "teal.data", - "Version": "0.3.0.9005", + "Version": "0.3.0", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.data", - "RemoteRef": "main", - "RemoteSha": "49b59f17967199d4d66a52c011b1abab380ff1cf", + "RemoteRef": "v0.3.0", + "RemoteSha": "f437944ffd6e06426d8336420cf80596d94a2798", "Requirements": [ "R", "R6", @@ -2978,18 +2832,18 @@ "utils", "yaml" ], - "Hash": "4a69318ce2afea71627f82f42f62f511" + "Hash": "4a3a59cab2af17e565976d52ca2b1325" }, "teal.logger": { "Package": "teal.logger", - "Version": "0.1.3.9005", + "Version": "0.1.3", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.logger", - "RemoteRef": "main", - "RemoteSha": "16ef53393843b75a3b930a41ab77c5b1054143d5", + "RemoteRef": "v0.1.3", + "RemoteSha": "48a1248dab95d7fa59dd82919a28b917ed5bb96b", "Requirements": [ "R", "glue", @@ -2998,18 +2852,18 @@ "shiny", "withr" ], - "Hash": "6781a6eadbe8e095c434eacf7838b2d5" + "Hash": "c9a521b27f0d1cd16f118907de94ede1" }, "teal.modules.general": { "Package": "teal.modules.general", - "Version": "0.2.16.9008", + "Version": "0.2.16", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.modules.general", - "RemoteRef": "main", - "RemoteSha": "ecca50b3fc67f0d584015bfc5797a73f6e2ec1d0", + "RemoteRef": "v0.2.16", + "RemoteSha": "4cb69ed65b378b23014ca42f890c09ac48f7aaac", "Requirements": [ "DT", "R", @@ -3042,18 +2896,18 @@ "tidyselect", "utils" ], - "Hash": "df8921e940a57c0ab64860baadeec826" + "Hash": "1c8789ed345d65eeb6d295031adb682d" }, "teal.modules.hermes": { "Package": "teal.modules.hermes", - "Version": "0.1.5.9005", + "Version": "0.1.5", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.modules.hermes", - "RemoteRef": "main", - "RemoteSha": "3d16439ea447c4a0aee910270aeab6ebe9dc61de", + "RemoteRef": "v0.1.5", + "RemoteSha": "670a66fb8ec4f621d14d6eb455de93e122336999", "Requirements": [ "DT", "MultiAssayExperiment", @@ -3080,23 +2934,22 @@ "teal.widgets", "tern" ], - "Hash": "afbc7a6063ef2289d2df2d812eed03f7" + "Hash": "e24050474022ba2f0252502d3224c1ab" }, "teal.reporter": { "Package": "teal.reporter", - "Version": "0.2.1.9003", + "Version": "0.2.1", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.reporter", - "RemoteRef": "main", - "RemoteSha": "4fa942ec6c8c72f466505b969244c7a70d7e9f28", + "RemoteRef": "v0.2.1", + "RemoteSha": "eac7f58a56b4da14e9fccf698a50804f1987db92", "Requirements": [ "R6", "bslib", "checkmate", - "flextable", "grid", "htmltools", "knitr", @@ -3107,18 +2960,18 @@ "yaml", "zip" ], - "Hash": "11154609775f0db9a9d4685371f7d022" + "Hash": "895b5074e34610fde2fc93f37d94679c" }, "teal.slice": { "Package": "teal.slice", - "Version": "0.4.0.9014", + "Version": "0.4.0.9020", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.slice", - "RemoteRef": "main", - "RemoteSha": "0a48af85052285f81f608fe519c1682a5a7048f8", + "RemoteRef": "103491c67e26a9a85d636bd105a806904a0111ec", + "RemoteSha": "103491c67e26a9a85d636bd105a806904a0111ec", "Requirements": [ "R", "R6", @@ -3138,20 +2991,21 @@ "shinyjs", "teal.data", "teal.logger", - "teal.widgets" + "teal.widgets", + "utils" ], - "Hash": "da5bf873fb4e1ccb7ee5229ee1947975" + "Hash": "89f39250c7015ae8f290ea2cdae72232" }, "teal.transform": { "Package": "teal.transform", - "Version": "0.4.0.9004", + "Version": "0.4.0", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.transform", - "RemoteRef": "main", - "RemoteSha": "73c8b4822c91a9128974990e540f3f3c03a8adcc", + "RemoteRef": "v0.4.0", + "RemoteSha": "5e7acf73f9023459a39d1f88279ed72005521219", "Requirements": [ "R", "checkmate", @@ -3172,18 +3026,18 @@ "tidyr", "tidyselect" ], - "Hash": "1c14c786ee47d785e97a62a803cae45d" + "Hash": "06fc9d71fa927cf6e05932269cdcb47b" }, "teal.widgets": { "Package": "teal.widgets", - "Version": "0.4.0.9009", + "Version": "0.4.1", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "teal.widgets", - "RemoteRef": "main", - "RemoteSha": "e16d95b2dfee805b2f887caf0006204e3591a08e", + "RemoteRef": "v0.4.1", + "RemoteSha": "82dbfddca13dff5d39b773c479a44f430fda971d", "Requirements": [ "R", "bslib", @@ -3200,18 +3054,18 @@ "shinyjs", "styler" ], - "Hash": "c296470b7fbaed2793f7f78d0f4cd6ef" + "Hash": "498ebd85ad5b2cba1115a0778061b1be" }, "tern": { "Package": "tern", - "Version": "0.9.0.9007", + "Version": "0.9.3", "Source": "GitHub", "RemoteType": "github", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "tern", - "RemoteRef": "main", - "RemoteSha": "7ac86743ffa95af70e06b6bc43fe727e22de5f25", + "RemoteRef": "v0.9.3", + "RemoteSha": "dd9f020f647706964098e60e9b2b35cc0233c04e", "Requirements": [ "R", "Rdpack", @@ -3240,11 +3094,11 @@ "tidyr", "utils" ], - "Hash": "14a521195daccdee5aaaac414222e9e3" + "Hash": "39035b5c739e5bdfcc8870ca3d29fb0d" }, "testthat": { "Package": "testthat", - "Version": "3.1.10", + "Version": "3.2.1", "Source": "Repository", "Repository": "RSPM", "Requirements": [ @@ -3255,7 +3109,6 @@ "cli", "desc", "digest", - "ellipsis", "evaluate", "jsonlite", "lifecycle", @@ -3270,19 +3123,7 @@ "waldo", "withr" ], - "Hash": "6f403dc49295610a3a67ea1a9ca64346" - }, - "textshaping": { - "Package": "textshaping", - "Version": "0.3.6", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "cpp11", - "systemfonts" - ], - "Hash": "1ab6223d3670fac7143202cb6a2d43d5" + "Hash": "4767a686ebe986e6cb01d075b3f09729" }, "tibble": { "Package": "tibble", @@ -3344,62 +3185,29 @@ }, "tinytex": { "Package": "tinytex", - "Version": "0.46", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "xfun" - ], - "Hash": "0c41a73214d982f539c56a7773c7afa5" - }, - "triebeard": { - "Package": "triebeard", - "Version": "0.4.1", + "Version": "0.49", "Source": "Repository", "Repository": "RSPM", "Requirements": [ - "Rcpp" - ], - "Hash": "642507a148b0dd9b5620177e0a044413" - }, - "urltools": { - "Package": "urltools", - "Version": "1.7.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "Rcpp", - "methods", - "triebeard" + "xfun" ], - "Hash": "e86a704261a105f4703f653e05defa3e" + "Hash": "5ac22900ae0f386e54f1c307eca7d843" }, "utf8": { "Package": "utf8", - "Version": "1.2.3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "1fe17157424bb09c48a8b3b550c753bc" - }, - "uuid": { - "Package": "uuid", - "Version": "1.1-1", + "Version": "1.2.4", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "R" ], - "Hash": "3d78edfb977a69fc7a0341bee25e163f" + "Hash": "62b65c52671e6665f803ff02954446e9" }, "vctrs": { "Package": "vctrs", - 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"Version": "0.40", + "Version": "0.41", "Source": "Repository", - "Repository": "CRAN", + "Repository": "RSPM", "Requirements": [ "stats", "tools" ], - "Hash": "be07d23211245fc7d4209f54c4e4ffc8" + "Hash": "460a5e0fe46a80ef87424ad216028014" }, "xml2": { "Package": "xml2", - "Version": "1.3.5", + "Version": "1.3.6", "Source": "Repository", "Repository": "RSPM", "Requirements": [ "R", - "methods" + "cli", + "methods", + "rlang" ], - "Hash": "6c40e5cfcc6aefd88110666e18c31f40" + "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61" }, "xtable": { "Package": "xtable", @@ -3485,10 +3296,10 @@ }, "yaml": { "Package": "yaml", - "Version": "2.3.7", + "Version": "2.3.8", "Source": "Repository", - "Repository": "CRAN", - "Hash": "0d0056cc5383fbc240ccd0cb584bf436" + "Repository": "RSPM", + "Hash": "29240487a071f535f5e5d5a323b7afbd" }, "zip": { "Package": "zip",