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teal.data 0.6.0.9025

Breaking changes

  • Soft deprecate datanames argument of get_code(). Use names instead.
  • Soft deprecate of datanames(). Use names() instead.
  • Deprecate of datanames(x) <- value. Does nothing, replace with renaming the objects inside the environment.
  • All parameters and functions deprecated on 0.4.0 were removed.

Enhancements

  • names() function is introduced replacing datanames.
    • if join_keys are provided, the names() are now sorted in topological way (Kahn algorithm), which means the parent dataset always precedes the child dataset.
    • are extended by the parent dataset name, if one of the child dataset exist in names() and the connection between child-parent is set through join_keys and parent exist in teal_data environment.
    • do not allow to set a dataset name that do not exist in teal_data environment.
    • teal_data no longer set default names() based on join_keys names - it uses only data names.

Miscellaneous

  • get_code no longer adds warning message about failed verification.

teal.data 0.6.0

Enhancements

  • col_relabel supports NA to remove labels (similar to the col_labels<-).

Bug fixes

  • Fixed bug in get_code causing incorrect lines order of the returned code.
  • Fixed bug in col_labels causing incorrect label names to be returned when input data contains named label attributes.

teal.data 0.5.0

Bug fixes

  • Fix the get_code_dependency bug to detect the usage of objects in functions on both the left and right-hand sides for code reproducibility.
  • Remove duplicate entries in the code_graph.

Enhancements

  • Extended get_code.teal_data() with a possibility to steer internal methods with ... parameter.

teal.data 0.4.0

Enhancements

  • Simplified join_key to better support primary keys.
  • JoinKey R6 object was removed in favor of a list-like object with class name join_keys. Subset operators and assignments are supported ([, [[, [<- and [[<-)
  • join_keys function works as a constructor, getter and setter.

Breaking changes

  • teal_data() and cdisc_data() return now teal_data class object which replaces TealData class object. teal_data becomes a standard input for the entire teal framework.
  • TealDataset, TealDatasetConnector or TealDataConnector classes have been removed. Delayed-data-loading is no longer supported by teal.data. So called connectors are now supported by teal package (see ?teal::teal_data_module).
  • join_keys() and join_key() return now join_keys object which replace JoinKeys class.

Miscellaneous

  • Specified minimal version of package dependencies.
  • Upgraded teal.code dependency from Imports to Depends.
  • Deprecated get_labels function and removed the supporting function data_label.

teal.data 0.3.0

Enhancements

  • Removed scda package dependency from examples.
  • Added col_labels function and removed formatters dependency.

Miscellaneous

  • Update installation instructions.

teal.data 0.2.0

Enhancements

  • Added ADQLQC, ADCSSRS, and ADEQ5D5L as supported data sets.
  • Improved error message in get_cdisc_keys.
  • Examples now use scda.2022 instead of scda.2021.
  • Fixed help files for TealDataset and MAETealDataset.
  • Added backstop for missing reticulate package in teal.data with Python vignette.

Miscellaneous

  • Modified teal.Dataset$print method for a less cluttered output.
  • Transferred data hashing step in TealDataset and MAETealDataset to teal.
  • Removed CDISCTealData class and updated TealData to account for the removed functionality.
  • Added datasets parents information to JoinKeys class.
  • Updated cdisc_data and teal_data wrappers to handle join_keys creation and updating instead of CDISCTealData and TealData.
  • Removed join_keys methods from TealDataset, TealDatasetConnector.

teal.data 0.1.2

Enhancements

  • Updated the vignettes and the README content.

Miscellaneous

  • Exported validate_metadata function.
  • Replaced argument name by archive_name to comply with the latest version of the synthetic_cdisc_dataset function.
  • Replaced use of scda with random.cdisc.data

Bug fixes

  • Fixed get_raw_data examples.

teal.data 0.1.1

Miscellaneous

  • Added a template to the pkgdown site.
  • Removed the usage of .Globalenv in Python code execution.
  • Updated package authors.
  • Added package vignettes.

teal.data 0.1.0

  • Initial release of teal.data a package for the data model used by teal applications.

Changes (from behavior when functionality was part of teal)

New features

  • Added metadata field to TealDataset to store a named list of metadata items. It is available for module developers through FilteredData$get_metadata("<<dataname>>") and can be pulled or added directly to datasets derived from TealDatasetConnectors.

Breaking changes

  • get_key_duplicates returns a data.frame instead of a tibble.
  • get_call() function of CallableFunction now returns call with namespace included.
  • MultiAssayExperiment and SummarizedExperiment are now suggested packages, not required. Objects dependent on MultiAssayExperiment are changed to lazy-load these now suggested packages.
  • Minor changes to the interface of TealDataset, for example some active fields should be replaced by explicit "get" calls.

Miscellaneous

  • As reticulate is in Suggests, added requireNamespace call whenever it is needed.
  • dplyr moved from imports to suggests.
  • Removed redundant calling of the JoinKeys$mutate method inside of for-loops.
  • Removed rtables dependency from the package.