From 3466d4aa5823509d080ecfb37f03655eaab5e8f1 Mon Sep 17 00:00:00 2001
From: shajoezhu <sha.joe.zhu@gmail.com>
Date: Tue, 29 Oct 2024 13:41:33 +0800
Subject: [PATCH] close #940

---
 .github/workflows/check.yaml | 12 ++++++++++
 staged_dependencies.yaml     | 44 ------------------------------------
 2 files changed, 12 insertions(+), 44 deletions(-)
 delete mode 100644 staged_dependencies.yaml

diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml
index fa5a2674a..751f01ca5 100644
--- a/.github/workflows/check.yaml
+++ b/.github/workflows/check.yaml
@@ -25,6 +25,9 @@ jobs:
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/formatters
       additional-env-vars: |
         _R_CHECK_CRAN_INCOMING_REMOTE_=false
       additional-r-cmd-check-params: --as-cran
@@ -46,6 +49,9 @@ jobs:
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/formatters
       additional-env-vars: |
         NOT_CRAN=true
       enforce-note-blocklist: true
@@ -66,6 +72,9 @@ jobs:
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/formatters
       additional-env-vars: |
         NOT_CRAN=true
   linter:
@@ -78,6 +87,9 @@ jobs:
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/formatters
       auto-update: true
   gitleaks:
     name: gitleaks 💧
diff --git a/staged_dependencies.yaml b/staged_dependencies.yaml
deleted file mode 100644
index 24c6550c8..000000000
--- a/staged_dependencies.yaml
+++ /dev/null
@@ -1,44 +0,0 @@
-current_repo:
-  repo: insightsengineering/rtables
-  host: https://github.com
-upstream_repos:
-  insightsengineering/formatters:
-    repo: insightsengineering/formatters
-    host: https://github.com
-downstream_repos:
-  insightsengineering/tern:
-    repo: insightsengineering/tern
-    host: https://github.com
-  insightsengineering/tern.mmrm:
-    repo: insightsengineering/tern.mmrm
-    host: https://github.com
-  insightsengineering/tern.rbmi:
-    repo: insightsengineering/tern.rbmi
-    host: https://github.com
-  insightsengineering/teal.widgets:
-    repo: insightsengineering/teal.widgets
-    host: https://github.com
-  insightsengineering/teal.modules.clinical:
-    repo: insightsengineering/teal.modules.clinical
-    host: https://github.com
-  insightsengineering/teal.modules.general:
-    repo: insightsengineering/teal.modules.general
-    host: https://github.com
-  insightsengineering/teal.modules.hermes:
-    repo: insightsengineering/teal.modules.hermes
-    host: https://github.com
-  insightsengineering/chevron:
-    repo: insightsengineering/chevron
-    host: https://github.com
-  insightsengineering/citril:
-    repo: insightsengineering/citril
-    host: https://github.com
-  insightsengineering/teal.reporter:
-    repo: insightsengineering/teal.reporter
-    host: https://github.com
-  insightsengineering/tern.gee:
-    repo: insightsengineering/tern.gee
-    host: https://github.com
-  insightsengineering/scda.test:
-    repo: insightsengineering/scda.test
-    host: https://github.com